SLC6A19

General Information

Gene Name       : SLC6A19
Gene ID             : ENSG00000174358.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC6A19)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC6A19ENSG00000174358.150.000.010.01ENCSR000AEF
HepG2SLC6A19ENSG00000174358.150.020.020.02ENCSR985KAT
K562SLC6A19ENSG00000174358.150.800.500.65ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC6A19 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC6A19 RNA is bound by 3 proteins.  







eCLIP assay for SLC6A19 is not avaliable on ENCORE database.





3 proteins are bound to SLC6A19 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr512222681222385+3'-UTR4.5546818.28927K562TARDBP
chr512224291222477+3'-UTR4.161183.60944K562TARDBP
chr512226951222750+3'-UTR3.532494.60942K562TARDBP
chr512225201222615+3'-UTR5.152887.89429K562TARDBP
chr512221271222210+3'-UTR5.5695613.42901K562TARDBP
chr512226161222668+3'-UTR4.307865.08344K562TARDBP
chr512228971222985+3'-UTR5.268406.84138K562EIF4G2
chr512227631222823+3'-UTR4.864735.14653K562EIF4G2
chr512098151209976+intron-Distal3.761577.16876K562PTBP1
chr512121821212285+intron-Distal6.0551411.47680K562EIF4G2
chr512120691212140+intron-Distal3.139653.71972K562TARDBP
chr512118041211841+intron-Distal3.772213.56210K562EIF4G2
chr512119061212009+intron-Distal4.540896.23114K562TARDBP
chr512116771211865+intron-Distal4.170558.23540K562TARDBP
chr512119451212001+intron-Distal5.583436.58769K562EIF4G2
chr512121901212309+intron-Distal4.661185.79092K562TARDBP
chr512122851212334+intron-Distal,intron-Proximal5.344417.68107K562EIF4G2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC6A19 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC6A19 is not available on ENCORE database.

  • 67 RBPs can affect the levels of SLC6A19.  








The Knockdown/knockout RNA-Seq assay for SLC6A19 is not available on ENCORE database.





67 RBPs can affect the gene expression of SLC6A19 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC6A19ENSG00000174358.1112.513500.0000099999.999903.615502.33900HepG2AGO1
SLC6A19ENSG00000174358.1110.518800.474004.471702.223401.65320HepG2QKI
SLC6A19ENSG00000174358.1127.271001.873703.863306.136605.16300HepG2UPF1
SLC6A19ENSG00000174358.1128.2064083.86680-1.572104.623801.37120K562AATF
SLC6A19ENSG00000174358.117.5041064.91600-3.112809.603908.62760K562AGGF1
SLC6A19ENSG00000174358.11645.42280263.956301.2898012.8179010.20620K562APOBEC3C
SLC6A19ENSG00000174358.1151.47540218.27350-2.0842015.4448014.21180K562AQR
SLC6A19ENSG00000174358.11474.10570258.472300.875108.467305.26430K562AUH
SLC6A19ENSG00000174358.11166.1532091.284900.864004.238103.03260K562BCLAF1
SLC6A19ENSG00000174358.1158.45140107.11250-0.873802.544801.70900K562BOP1
SLC6A19ENSG00000174358.11315.94300204.093500.630303.247101.66380K562CKAP4
SLC6A19ENSG00000174358.11198.6685086.544101.198805.493701.96810K562CSTF2T
SLC6A19ENSG00000174358.1123.4842089.41150-1.928806.480003.62560K562DAZAP1
SLC6A19ENSG00000174358.1139.6359080.06530-1.014403.101801.69400K562DDX27
SLC6A19ENSG00000174358.1114.8828041.55720-1.481503.004701.91730K562DDX3X
SLC6A19ENSG00000174358.11131.76770196.70210-0.578002.625901.98920K562DDX47
SLC6A19ENSG00000174358.1114.6556072.69970-2.310508.586606.88450K562DKC1
SLC6A19ENSG00000174358.11161.2322090.567700.832002.747201.47280K562EEF2
SLC6A19ENSG00000174358.11162.85090249.75130-0.616902.983302.24120K562EIF2S2
SLC6A19ENSG00000174358.1123.4247093.63060-1.999008.181406.24620K562EIF3D
SLC6A19ENSG00000174358.11104.0187039.090901.411806.525304.62140K562EIF4B
SLC6A19ENSG00000174358.11745.10870299.109201.3167028.1051025.44550K562EIF4G2
SLC6A19ENSG00000174358.1128.0395066.06810-1.236503.227801.49680K562FASTKD2
SLC6A19ENSG00000174358.1124.0834087.71220-1.864706.895304.65370K562GEMIN5
SLC6A19ENSG00000174358.11421.80650140.587601.5850011.859709.67660K562GLRX3
SLC6A19ENSG00000174358.1168.79040332.85060-2.2746027.1558024.68960K562GRSF1
SLC6A19ENSG00000174358.11211.05590111.989300.914203.404201.39800K562HNRNPA0
SLC6A19ENSG00000174358.1133.9157097.74190-1.527004.161702.57490K562HNRNPA2B1
SLC6A19ENSG00000174358.1151.32580116.78800-1.186103.707501.87230K562HNRNPAB
SLC6A19ENSG00000174358.1118.37440144.04240-2.9707017.2031014.46560K562HNRNPM
SLC6A19ENSG00000174358.1133.00570237.41110-2.8466028.5634026.32390K562HSPD1
SLC6A19ENSG00000174358.11240.62190118.232501.025006.062903.45370K562IGF2BP1
SLC6A19ENSG00000174358.11178.5072076.515101.222107.065204.70380K562ILF3
SLC6A19ENSG00000174358.1127.4072068.61920-1.324103.542002.27810K562MAK16
SLC6A19ENSG00000174358.11120.6194032.021901.9132010.788408.85410K562MATR3
SLC6A19ENSG00000174358.1124.0354080.31140-1.740404.600303.36790K562MBNL1
SLC6A19ENSG00000174358.11599.92620318.850800.911806.194104.52190K562MSI2
SLC6A19ENSG00000174358.1136.38500147.80270-2.022306.459505.27150K562MTPAP
SLC6A19ENSG00000174358.1123.6189080.68960-1.772405.461002.48360K562NFX1
SLC6A19ENSG00000174358.1129.2386085.53000-1.548603.687902.49950K562PABPN1
SLC6A19ENSG00000174358.119.7931031.38850-1.680402.765601.41680K562PCBP1
SLC6A19ENSG00000174358.1160.3757028.547701.080502.274701.39250K562PCBP2
SLC6A19ENSG00000174358.118.3960031.18300-1.893003.341302.61920K562PTBP1
SLC6A19ENSG00000174358.11145.50120326.37510-1.165504.192903.19470K562PUF60
SLC6A19ENSG00000174358.11162.62800346.97870-1.093304.133402.81150K562PUM1
SLC6A19ENSG00000174358.11164.69930340.14640-1.046303.669302.56300K562PUM2
SLC6A19ENSG00000174358.115.2448067.00480-3.6753011.1888010.14670K562PUS1
SLC6A19ENSG00000174358.11208.1021029.880102.7999027.8467025.04280K562RBM22
SLC6A19ENSG00000174358.1131.16830105.22950-1.755404.867802.68230K562RBM39
SLC6A19ENSG00000174358.11105.5757031.448801.747108.187106.24010K562NELFE
SLC6A19ENSG00000174358.1185.3018032.869401.375702.184501.30440K562RPS3
SLC6A19ENSG00000174358.11185.9604072.825301.352406.689204.39800K562SERBP1
SLC6A19ENSG00000174358.114.0190078.23870-4.283009.648507.01820K562SF1
SLC6A19ENSG00000174358.1154.69640162.02620-1.566705.411904.30050K562SF3A3
SLC6A19ENSG00000174358.1122.4123084.41100-1.913106.649903.58520K562SMNDC1
SLC6A19ENSG00000174358.11199.2365030.574002.7040023.7943021.71900K562SRSF1
SLC6A19ENSG00000174358.1114.9580063.70090-2.090406.458904.37210K562SSB
SLC6A19ENSG00000174358.11134.99570210.13320-0.638402.633501.42090K562STAU1
SLC6A19ENSG00000174358.1120.47810107.46210-2.391708.016105.22780K562SUPT6H
SLC6A19ENSG00000174358.1161.22490111.67040-0.867103.006602.14580K562SYNCRIP
SLC6A19ENSG00000174358.11209.1179030.933702.7570026.0124023.40900K562TARDBP
SLC6A19ENSG00000174358.1155.4563018.485201.584903.119201.41710K562TBRG4
SLC6A19ENSG00000174358.1166.3336029.841501.152302.442801.67890K562TIA1
SLC6A19ENSG00000174358.11510.00330367.836200.471302.903101.46370K562UBE2L3
SLC6A19ENSG00000174358.1152.30540174.16570-1.735405.949304.94110K562UPF1
SLC6A19ENSG00000174358.1128.3452067.91740-1.260702.582601.34940K562UTP18
SLC6A19ENSG00000174358.1144.21380149.03310-1.753105.217703.99630K562WDR3
SLC6A19ENSG00000174358.11151.02250245.91090-0.703403.990602.92150K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC6A19 is not available on ENCORE database.





1 RBPs can affect the splicing of SLC6A19 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RISLC6A19ENSG00000174358.11chr5+1216672121706012166721216801121690312170600.457000.000840.09054includedK562UPF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC6A19 is not avaliable on ENCORE database.