SLC4A1AP

General Information

Gene Name       : SLC4A1AP
Gene ID             : ENSG00000163798.13
Essential Gene : No

Functions

Localization(RBPImage: SLC4A1AP)

Domains (AlphaFold: SLC4A1AP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC4A1APENSG00000163798.1319.8419.0319.44ENCSR000AEF
HepG2SLC4A1APENSG00000163798.1322.8233.7128.27ENCSR985KAT
K562SLC4A1APENSG00000163798.1326.1326.8226.48ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
SLC4A1APHepG2shRNABGHLV35-43,BGHLV35-44BGHLV35-1,BGHLV35-2no clear band,NotSatisfiedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    SLC4A1AP: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Cytoplasm
  • Compartment/Organelle
  • Mitochondria












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








    RNA Targets

    • eCLIP assay for SLC4A1AP is not avaliable on ENCORE database.



    Proteins bound to RNA
    • SLC4A1AP RNA is bound by 14 proteins.  







    eCLIP assay for SLC4A1AP is not avaliable on ENCORE database.





    14 proteins are bound to SLC4A1AP RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr22789844227898553+3'-UTR,CDS3.409848.66760K562UCHL5
    chr22789844627898562+3'-UTR,CDS,intron-Proximal3.7528910.27253HepG2PPIG
    chr22789846927898551+3'-UTR,CDS4.485924.40915HepG2ZNF800
    chr22789844127898539+3'-UTR,CDS4.755036.72801K562GRWD1
    chr22789844127898550+3'-UTR,CDS5.1013613.49474HepG2BCLAF1
    chr22789845327898515+3'-UTR,CDS3.594596.74842K562ZNF622
    chr22789218827892252+5'-UTR,CDS3.795843.45590K562GRWD1
    chr22789211427892145+5'-UTR,CDS,intron-Proximal3.287664.44630K562ZNF622
    chr22789173227891771+5'-UTR,CDS,intron-Proximal3.179163.45280HepG2BCLAF1
    chr22789172827891770+5'-UTR,CDS3.764094.24220K562ZNF622
    chr22789211427892187+5'-UTR,CDS,intron-Proximal3.792146.36847HepG2BCLAF1
    chr22789013427890204+CDS,intron-Proximal3.184275.89932K562ZNF622
    chr22790802127908129+CDS4.348968.92108K562UCHL5
    chr22788802927888104+CDS4.963086.29310K562ZNF622
    chr22788810227888163+CDS,intron-Proximal3.220396.86395HepG2BCLAF1
    chr22790020727900230+CDS4.190923.53690K562ZNF622
    chr22788803527888087+CDS3.617364.40383K562UCHL5
    chr22788813927888163+CDS,intron-Proximal3.394067.32655K562UCHL5
    chr22790069827900760+CDS3.899056.97808HepG2BCLAF1
    chr22788810427888164+CDS,intron-Proximal3.717157.13692K562ZNF622
    chr22789013227890220+CDS,intron-Proximal3.017695.98862HepG2GRWD1
    chr22789013227890149+CDS,intron-Proximal3.278406.58818HepG2PPIG
    chr22789013327890219+CDS,intron-Proximal6.0685713.92749HepG2BCLAF1
    chr22788717027887258+CDS3.820207.11560HepG2GRWD1
    chr22788813827888162+CDS3.198834.24070HepG2GRWD1
    chr22791154727911634+CDS,intron-Proximal3.392643.55754HepG2U2AF2
    chr22788808727888139+CDS4.455749.20390K562UCHL5
    chr22789013327890217+CDS,intron-Proximal4.2584616.61833K562UCHL5
    chr22788806027888138+CDS4.389774.91614HepG2GRWD1
    chr22788815527888164+CDS,intron-Proximal3.488705.58370HepG2PPIG
    chr22788717527887225+CDS3.098404.33023K562ZNF622
    chr22790060427900622+CDS,intron-Proximal4.202103.87582K562ZNF622
    chr22790511427905153+CDS,intron-Proximal4.230926.23296HepG2BCLAF1
    chr22790076027900791+CDS5.102546.71715HepG2BCLAF1
    chr22790791827907950+CDS3.813853.22721K562YBX3
    chr22788804827888128+CDS3.161114.38519K562BUD13
    chr22789013327890194+CDS,intron-Proximal3.652694.58459K562GRWD1
    chr22791088627910896+CDS,intron-Proximal3.407154.41130K562AQR
    chr22791542127915486+intron-Distal4.849266.62732K562HNRNPM
    chr22791534827915400+intron-Distal3.638544.31711K562EXOSC5
    chr22791447227914522+intron-Distal3.214503.69184HepG2SUGP2
    chr22791404227914106+intron-Distal5.119078.69493K562EXOSC5
    chr22789621927896267+intron-Distal4.018663.03891HepG2PTBP1
    chr22789632127896374+intron-Distal3.854876.25656HepG2PTBP1
    chr22791463227914686+intron-Distal3.814054.61337K562EXOSC5
    chr22791542727915468+intron-Distal4.465794.80466K562EXOSC5
    chr22790450127904573+intron-Distal4.582343.92866K562PTBP1
    chr22791538927915475+intron-Distal4.182383.86368HepG2HNRNPM
    chr22791598027916027+intron-Distal4.249733.01456K562EXOSC5
    chr22791388427913961+intron-Distal5.000986.08869K562EXOSC5
    chr22791448227914520+intron-Distal3.618213.14999K562EXOSC5
    chr22789632327896401+intron-Distal4.986025.89856K562PTBP1
    chr22791089627910926+intron-Proximal4.085045.47926K562AQR
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for SLC4A1AP is not avaliable on ENCORE database.



    Diffrential Expression

    • The Knockdown/knockout assay for SLC4A1AP is not available on ENCORE database.

    • 46 RBPs can affect the levels of SLC4A1AP.  








    The Knockdown/knockout RNA-Seq assay for SLC4A1AP is not available on ENCORE database.





    46 RBPs can affect the gene expression of SLC4A1AP :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    SLC4A1APENSG00000163798.91144.98980950.483500.268502.798502.18790HepG2ACO1
    SLC4A1APENSG00000163798.92168.328701533.666200.499503.991703.37010HepG2AKAP1
    SLC4A1APENSG00000163798.91406.354501682.80400-0.258901.822001.32700HepG2BOP1
    SLC4A1APENSG00000163798.91245.758601853.63320-0.573303.730902.58610HepG2CCAR1
    SLC4A1APENSG00000163798.91164.32450799.604600.542002.903002.11950HepG2CNOT7
    SLC4A1APENSG00000163798.9989.609801544.87920-0.642607.595206.50170HepG2CPSF6
    SLC4A1APENSG00000163798.91529.968201259.859700.280103.006302.34100HepG2CELF1
    SLC4A1APENSG00000163798.9632.37000806.08640-0.350203.754903.01660HepG2DNAJC2
    SLC4A1APENSG00000163798.9760.701601213.23760-0.673506.704605.80770HepG2EIF2S1
    SLC4A1APENSG00000163798.91005.923001305.39420-0.376001.895401.31870HepG2EIF4B
    SLC4A1APENSG00000163798.91804.964701344.850100.424402.911002.12130HepG2FIP1L1
    SLC4A1APENSG00000163798.91056.879301332.15430-0.334002.194401.40580HepG2G3BP2
    SLC4A1APENSG00000163798.9543.72620736.26100-0.437302.928502.00470HepG2GEMIN5
    SLC4A1APENSG00000163798.91219.011001751.16820-0.522604.547403.73950HepG2GPKOW
    SLC4A1APENSG00000163798.9980.455301244.96160-0.344603.875402.79810HepG2HNRNPA2B1
    SLC4A1APENSG00000163798.91028.188801211.70490-0.236901.913501.30970HepG2HNRNPF
    SLC4A1APENSG00000163798.91296.927701671.17870-0.365802.784702.15350HepG2HNRNPLL
    SLC4A1APENSG00000163798.9584.91680926.71050-0.6639012.7541011.30580HepG2ILF2
    SLC4A1APENSG00000163798.9994.154601240.48070-0.319401.917001.30700HepG2PABPC4
    SLC4A1APENSG00000163798.91234.78850907.550200.444102.326801.37140HepG2PCBP2
    SLC4A1APENSG00000163798.91136.105701361.18510-0.260803.159302.53520HepG2PUM1
    SLC4A1APENSG00000163798.91633.23050875.922000.898806.497005.44150HepG2RAVER1
    SLC4A1APENSG00000163798.91707.441401361.721000.326302.899602.02450HepG2RBM15
    SLC4A1APENSG00000163798.91110.037101327.68380-0.258302.376901.79970HepG2RECQL
    SLC4A1APENSG00000163798.92086.886001597.550700.385406.865406.17430HepG2SRFBP1
    SLC4A1APENSG00000163798.91751.592001391.830000.331604.746704.16990HepG2SRSF1
    SLC4A1APENSG00000163798.91050.869201629.07460-0.632507.683506.55220HepG2TARDBP
    SLC4A1APENSG00000163798.9755.90510889.42920-0.234701.918601.43240HepG2TRIM56
    SLC4A1APENSG00000163798.92029.972601150.525300.8191012.2038010.85510HepG2U2AF1
    SLC4A1APENSG00000163798.9984.194701215.20070-0.304203.267102.51920HepG2UPF1
    SLC4A1APENSG00000163798.92411.251401482.959900.7012010.246509.22710K562AQR
    SLC4A1APENSG00000163798.9353.46040511.43210-0.533003.785402.51410K562CCAR1
    SLC4A1APENSG00000163798.91429.566501730.14560-0.275302.842201.71780K562CPEB4
    SLC4A1APENSG00000163798.92124.322601790.113400.246902.852502.19110K562DDX47
    SLC4A1APENSG00000163798.9943.72020675.645100.482003.870902.77700K562EFTUD2
    SLC4A1APENSG00000163798.9966.809501208.56850-0.322003.245902.47720K562EIF2S2
    SLC4A1APENSG00000163798.91103.64450848.638400.379004.159903.44020K562FXR1
    SLC4A1APENSG00000163798.91055.98590810.708400.381201.924901.34680K562G3BP2
    SLC4A1APENSG00000163798.91294.22680988.847600.388202.844501.59260K562HNRNPK
    SLC4A1APENSG00000163798.91237.593101420.97550-0.199302.183301.51290K562NSUN2
    SLC4A1APENSG00000163798.91146.94280925.823100.308902.202201.33370K562PCBP2
    SLC4A1APENSG00000163798.91209.19750657.481300.8789011.505009.96700K562PRPF8
    SLC4A1APENSG00000163798.92960.469502062.234600.521505.953604.76180K562PUF60
    SLC4A1APENSG00000163798.91860.491201423.061600.386603.353402.76400K562PUS1
    SLC4A1APENSG00000163798.9935.96210669.694700.482803.251502.36510K562RPS19
    SLC4A1APENSG00000163798.91155.574101402.14340-0.279002.711901.90490K562SF3A3
    SLC4A1APENSG00000163798.91239.901101436.52650-0.212402.153901.31910K562SRPK2
    SLC4A1APENSG00000163798.91400.60610991.102600.498805.844904.82610K562SRSF1
    SLC4A1APENSG00000163798.91160.24430886.057500.388903.804402.84000K562SYNCRIP
    SLC4A1APENSG00000163798.91000.01810811.465200.301302.324001.58940K562U2AF2
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for SLC4A1AP is not available on ENCORE database.





    3 RBPs can affect the splicing of SLC4A1AP :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SESLC4A1APENSG00000163798.9chr2+279115662791163427910800279108872791655127916621-0.273000.000000.00000excludedK562SF3B4
    SESLC4A1APENSG00000163798.9chr2+279051142790522627900604279007912790790327908144-0.073000.000960.01178excludedK562AQR
    SESLC4A1APENSG00000163798.9chr2+279115662791163427910800279108872791655127916621-0.161000.000000.00000excludedK562AQR
    SESLC4A1APENSG00000163798.9chr2+279115662791163427910800279108872791655127916621-0.092000.000130.00888excludedHepG2SF3B4
    SESLC4A1APENSG00000163798.9chr2+279115662791163427910800279108872791655127916621-0.113000.000290.01762excludedK562HNRNPK
    A5SSSLC4A1APENSG00000163798.9chr2+2789839827898587278983982789855927900161279002310.077000.000570.01156longerK562AQR
    A5SSSLC4A1APENSG00000163798.9chr2+2791080027911042279108002791088727911566279116340.088000.000000.00005longerK562AQR
    MXESLC4A1APENSG00000163798.9chr2+27900564279007912790502827905226279001612790023127907903279081440.073000.001020.009261includedK562AQR
    MXESLC4A1APENSG00000163798.9chr2+27900564279007912790511427905226279001612790023127907903279081440.074000.000940.008681includedK562AQR
    MXESLC4A1APENSG00000163798.9chr2+2791156627911634279164932791662127910800279108872791750027917836-0.213000.000080.001002includedK562AQR
    MXESLC4A1APENSG00000163798.9chr2+2791156627911634279165512791662127910800279108872791750027917836-0.214000.000070.000842includedK562AQR

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for SLC4A1AP is not avaliable on ENCORE database.