SLC45A4

General Information

Gene Name       : SLC45A4
Gene ID             : ENSG00000022567.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC45A4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC45A4ENSG00000022567.90.391.080.74ENCSR000AEF
HepG2SLC45A4ENSG00000022567.90.000.000.00ENCSR985KAT
K562SLC45A4ENSG00000022567.96.525.676.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC45A4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC45A4 RNA is bound by 15 proteins.  







eCLIP assay for SLC45A4 is not avaliable on ENCORE database.





15 proteins are bound to SLC45A4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr8142264096142264158-5'-UTR,CDS,intron-Distal,intron-Proximal3.059133.98140K562LIN28B
chr8142318284142318364-5'-UTR,intron-Distal4.033953.86664K562DDX3X
chr8142264231142264341-CDS,intron-Distal,intron-Proximal3.462214.93452K562NOLC1
chr8142264235142264277-CDS,intron-Distal,intron-Proximal4.1399118.44335K562YBX3
chr8142289735142289807-intron-Distal4.244004.14056K562EWSR1
chr8142264526142264582-intron-Distal3.382604.94406K562YBX3
chr8142279509142279554-intron-Distal4.901155.63362K562AGGF1
chr8142282105142282195-intron-Distal4.992668.61835K562TARDBP
chr8142280081142280164-intron-Distal5.4827310.48612K562AGGF1
chr8142262072142262163-intron-Distal4.112533.54514K562TIA1
chr8142308603142308677-intron-Distal3.463884.25440K562TIA1
chr8142316228142316307-intron-Distal3.808133.43867K562CSTF2T
chr8142264454142264524-intron-Distal3.891543.60656K562NOLC1
chr8142280073142280175-intron-Distal3.996416.36430K562GTF2F1
chr8142282841142282918-intron-Distal4.228154.23759K562NONO
chr8142309179142309260-intron-Distal3.486554.48585K562NONO
chr8142279507142279632-intron-Distal5.2912411.85167K562HNRNPL
chr8142296776142296826-intron-Distal3.791023.17740K562CSTF2T
chr8142281890142281970-intron-Distal4.646906.75032K562TARDBP
chr8142317561142317646-intron-Distal3.296354.10487K562HNRNPK
chr8142282028142282097-intron-Distal4.398994.92524K562TARDBP
chr8142279565142279621-intron-Distal3.634476.74745K562AGGF1
chr8142279798142279918-intron-Distal5.1620610.67463K562HNRNPL
chr8142249625142249700-intron-Distal4.043674.13603K562TARDBP
chr8142317117142317190-intron-Distal3.803933.07008K562NONO
chr8142264497142264665-intron-Distal4.689716.30939K562IGF2BP1
chr8142316975142317028-intron-Distal4.212074.73315K562TIA1
chr8142316191142316279-intron-Distal3.140973.36616K562NONO
chr8142282050142282187-intron-Distal5.9956912.95876K562EIF4G2
chr8142280023142280172-intron-Distal4.8648918.03346K562HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC45A4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC45A4 is not available on ENCORE database.

  • 51 RBPs can affect the levels of SLC45A4.  








The Knockdown/knockout RNA-Seq assay for SLC45A4 is not available on ENCORE database.





51 RBPs can affect the gene expression of SLC45A4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC45A4ENSG00000022567.513.814900.0000099999.999904.155403.32880HepG2CPSF6
SLC45A4ENSG00000022567.511.616300.624604.216902.770602.02790HepG2DAZAP1
SLC45A4ENSG00000022567.521.681005.745701.915801.943201.41040HepG2DDX3X
SLC45A4ENSG00000022567.532.525204.744702.777104.439403.69780HepG2EIF2S1
SLC45A4ENSG00000022567.531.663200.0000099999.999907.774006.07970HepG2FTO
SLC45A4ENSG00000022567.510.233600.0000099999.999902.913802.27020HepG2HNRNPLL
SLC45A4ENSG00000022567.513.352900.0000099999.999903.456302.36570HepG2MTPAP
SLC45A4ENSG00000022567.528.854104.849902.572703.903203.05680HepG2PABPC4
SLC45A4ENSG00000022567.513.780502.043102.753701.863601.33580HepG2QKI
SLC45A4ENSG00000022567.518.150801.853603.291602.488401.84520HepG2RBM25
SLC45A4ENSG00000022567.58.372700.0000099999.999902.471701.99430HepG2TIAL1
SLC45A4ENSG00000022567.570.625103.723204.2455016.6632015.23110HepG2UPF1
SLC45A4ENSG00000022567.516.954504.094802.049701.858501.38570HepG2ZNF622
SLC45A4ENSG00000022567.5352.34390683.86080-0.9567014.1893013.00710K562AGGF1
SLC45A4ENSG00000022567.5267.71110387.94170-0.535204.003402.15260K562AKAP1
SLC45A4ENSG00000022567.5440.04140711.60000-0.693406.576905.53780K562AKAP8L
SLC45A4ENSG00000022567.5484.39030755.96050-0.642105.062504.31160K562AQR
SLC45A4ENSG00000022567.5553.64030746.66200-0.431503.714602.64270K562ATP5C1
SLC45A4ENSG00000022567.5204.46590292.19050-0.515002.308201.51820K562BOP1
SLC45A4ENSG00000022567.5367.73210571.76030-0.636803.110201.97550K562CNOT7
SLC45A4ENSG00000022567.5228.09970310.69940-0.445902.168501.46560K562CPSF6
SLC45A4ENSG00000022567.5707.423101051.60350-0.571906.902805.38240K562CELF1
SLC45A4ENSG00000022567.5580.83490802.35680-0.466103.356101.73690K562DDX19B
SLC45A4ENSG00000022567.5522.93500647.79400-0.308902.312401.70770K562DDX47
SLC45A4ENSG00000022567.5604.83410486.668600.313502.168301.51890K562EIF2S2
SLC45A4ENSG00000022567.5261.74370410.61850-0.649604.535403.48510K562EIF4A3
SLC45A4ENSG00000022567.5265.61910358.41580-0.432302.594301.34840K562EWSR1
SLC45A4ENSG00000022567.5226.15330316.09620-0.483102.319601.53450K562FMR1
SLC45A4ENSG00000022567.595.03260157.20040-0.726102.531801.86050K562G3BP2
SLC45A4ENSG00000022567.5398.81190572.39530-0.521304.639603.17130K562GLRX3
SLC45A4ENSG00000022567.5236.12790585.46460-1.3100019.3689016.55470K562HNRNPL
SLC45A4ENSG00000022567.5210.62730317.14220-0.590402.839001.89480K562HNRNPM
SLC45A4ENSG00000022567.5463.70340755.14400-0.703506.717505.30200K562KIF1C
SLC45A4ENSG00000022567.5427.08570601.80140-0.494804.699603.66830K562MTPAP
SLC45A4ENSG00000022567.5323.17250592.95880-0.875604.879303.59840K562NAA15
SLC45A4ENSG00000022567.5497.19180668.64180-0.427404.463803.54140K562NSUN2
SLC45A4ENSG00000022567.5362.38010549.29630-0.600102.930801.65630K562PABPC1
SLC45A4ENSG00000022567.5463.34130275.829900.748207.126206.09800K562PTBP1
SLC45A4ENSG00000022567.5755.70680992.53910-0.393303.709802.45890K562PUM1
SLC45A4ENSG00000022567.5256.80240705.62740-1.4582021.0069019.54240K562PUS1
SLC45A4ENSG00000022567.5331.11830687.59760-1.0542014.5007013.13230K562RBM15
SLC45A4ENSG00000022567.5363.76540264.430800.460002.162901.42460K562RBM22
SLC45A4ENSG00000022567.5389.63250659.79910-0.759909.896908.42500K562SF3A3
SLC45A4ENSG00000022567.5381.92370270.417000.498002.951702.22450K562SRSF1
SLC45A4ENSG00000022567.5252.55990156.910500.686603.273202.11170K562SRSF4
SLC45A4ENSG00000022567.5328.53830462.66360-0.493902.727601.48760K562STAU1
SLC45A4ENSG00000022567.583.51020154.31420-0.885802.863901.37210K562TAF15
SLC45A4ENSG00000022567.5448.99350273.654400.714205.479304.46640K562TARDBP
SLC45A4ENSG00000022567.5443.44130263.977200.748206.528205.19060K562TIA1
SLC45A4ENSG00000022567.5410.76880259.100100.664704.019002.66250K562TRA2A
SLC45A4ENSG00000022567.5565.49820708.97620-0.326202.746502.03020K562UPF1
SLC45A4ENSG00000022567.5381.00610606.64670-0.671006.586605.20250K562WDR3
SLC45A4ENSG00000022567.5485.83670630.85430-0.376803.425602.49210K562WDR43
SLC45A4ENSG00000022567.5554.38970851.62890-0.619306.443205.04010K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC45A4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SLC45A4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SLC45A4 is not avaliable on ENCORE database.