SERTAD3

General Information

Gene Name       : SERTAD3
Gene ID             : ENSG00000167565.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SERTAD3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SERTAD3ENSG00000167565.124.686.445.56ENCSR000AEF
HepG2SERTAD3ENSG00000167565.126.8210.788.80ENCSR985KAT
K562SERTAD3ENSG00000167565.1213.4310.1711.80ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SERTAD3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SERTAD3 RNA is bound by 10 proteins.  







eCLIP assay for SERTAD3 is not avaliable on ENCORE database.





10 proteins are bound to SERTAD3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194094722140947310-3'-UTR,intron-Distal,intron-Proximal4.413753.73331K562RBM15
chr194094705140947137-3'-UTR,intron-Distal3.401093.67576K562IGF2BP2
chr194094718940947253-3'-UTR,intron-Distal4.243709.26217K562DDX6
chr194094718840947254-3'-UTR,intron-Distal3.317413.44195K562TARDBP
chr194094792140948032-3'-UTR,5'-UTR,CDS,intron-Distal3.711236.88667K562BUD13
chr194094693240947013-3'-UTR,intron-Distal5.698609.61578K562DDX6
chr194095011640950167-5'-UTR,intron-Distal4.702895.21083K562DDX3X
chr194094979740949904-5'-UTR,intron-Distal3.050723.40058K562PRPF8
chr194094783240947931-CDS,intron-Distal3.951215.68843K562DDX6
chr194094947140949536-intron-Distal5.130535.80475HepG2XPO5
chr194095008840950122-intron-Distal4.747594.13847K562AQR
chr194094930040949402-intron-Distal3.106423.47229K562GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SERTAD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SERTAD3 is not available on ENCORE database.

  • 61 RBPs can affect the levels of SERTAD3.  








The Knockdown/knockout RNA-Seq assay for SERTAD3 is not available on ENCORE database.





61 RBPs can affect the gene expression of SERTAD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SERTAD3ENSG00000167565.8252.83950174.174500.537603.060302.42530HepG2ACO1
SERTAD3ENSG00000167565.8273.36870181.273300.592602.785202.01040HepG2CIRBP
SERTAD3ENSG00000167565.8166.36880106.743700.640102.361901.72870HepG2DDX21
SERTAD3ENSG00000167565.8421.81670220.906300.933107.061906.10410HepG2DDX3X
SERTAD3ENSG00000167565.8397.93270189.721701.068508.110507.10530HepG2DDX6
SERTAD3ENSG00000167565.8197.39750137.685200.519602.258601.61780HepG2DNAJC21
SERTAD3ENSG00000167565.8146.0209091.850000.668702.429801.59470HepG2GEMIN5
SERTAD3ENSG00000167565.8238.43010139.004300.778303.968803.21450HepG2HNRNPA1
SERTAD3ENSG00000167565.8230.88330154.618300.578402.356901.71180HepG2HNRNPC
SERTAD3ENSG00000167565.8319.32950209.413400.608603.039002.37660HepG2NCBP2
SERTAD3ENSG00000167565.8298.60940132.893801.167906.471005.07540HepG2PABPC1
SERTAD3ENSG00000167565.8293.34130186.532800.653103.404302.60870HepG2PABPC4
SERTAD3ENSG00000167565.8259.67950176.782500.554703.042702.47450HepG2PTBP1
SERTAD3ENSG00000167565.8127.65730191.48250-0.584902.450401.85630HepG2QKI
SERTAD3ENSG00000167565.8212.98740119.943400.828302.886002.16810HepG2RAVER1
SERTAD3ENSG00000167565.8306.29370173.774100.817605.461804.54360HepG2RBM25
SERTAD3ENSG00000167565.8214.45130121.002900.825503.660102.43930HepG2RCC2
SERTAD3ENSG00000167565.8151.73740100.390500.595901.994001.46400HepG2RPS19
SERTAD3ENSG00000167565.8219.71450137.431600.676802.980302.15080HepG2RPS2
SERTAD3ENSG00000167565.8213.39760140.283100.605102.449001.44060HepG2RPS5
SERTAD3ENSG00000167565.8449.21450178.999101.3274012.3185010.83710HepG2SF3A3
SERTAD3ENSG00000167565.8168.27980230.39730-0.453302.073801.45040HepG2SLBP
SERTAD3ENSG00000167565.8215.00770159.510300.430601.913801.36240HepG2SMN1
SERTAD3ENSG00000167565.8199.27910123.422600.691102.198201.50600HepG2SNRNP70
SERTAD3ENSG00000167565.8462.78580303.809300.607102.888202.37950HepG2SRFBP1
SERTAD3ENSG00000167565.8274.97980192.124000.517202.508802.05290HepG2SRSF1
SERTAD3ENSG00000167565.8210.57180126.997100.729403.311902.09700HepG2STIP1
SERTAD3ENSG00000167565.8203.79770139.267200.549202.177801.33800HepG2SUPT6H
SERTAD3ENSG00000167565.8237.89300149.240700.672603.588403.03440HepG2TIAL1
SERTAD3ENSG00000167565.8277.62670176.427100.654003.087502.42610HepG2U2AF1
SERTAD3ENSG00000167565.8244.47930158.745200.622903.719502.92870HepG2UPF1
SERTAD3ENSG00000167565.8264.00590153.479300.782403.005801.95900HepG2UPF2
SERTAD3ENSG00000167565.8208.27460131.920800.658702.552901.53920HepG2XRCC6
SERTAD3ENSG00000167565.8243.35790174.588800.479002.553902.02280HepG2ZNF622
SERTAD3ENSG00000167565.8709.44020301.489401.2345024.3943022.82360K562AGGF1
SERTAD3ENSG00000167565.8502.61510331.313400.601204.919203.51840K562AKAP8
SERTAD3ENSG00000167565.8844.56170313.718801.4286026.7536024.33780K562AKAP8L
SERTAD3ENSG00000167565.81223.82230423.619101.5305031.8609030.06580K562AQR
SERTAD3ENSG00000167565.8494.68230357.857100.467003.911803.15600K562DDX47
SERTAD3ENSG00000167565.8429.74130311.852800.462503.240102.47170K562EIF2S2
SERTAD3ENSG00000167565.8212.41320145.427400.546502.107601.40540K562EIF3G
SERTAD3ENSG00000167565.8352.79650207.030300.768905.532904.30910K562FIP1L1
SERTAD3ENSG00000167565.8131.45600202.89070-0.626102.540601.46880K562FKBP4
SERTAD3ENSG00000167565.8561.94960415.571700.435202.727901.97610K562GRSF1
SERTAD3ENSG00000167565.8466.09440217.588201.098905.151003.31730K562HNRNPA2B1
SERTAD3ENSG00000167565.8328.60970233.446600.493202.422701.85920K562HNRNPC
SERTAD3ENSG00000167565.8331.68110170.306000.961605.639904.24630K562HNRNPM
SERTAD3ENSG00000167565.8436.08330280.660200.635704.363503.37160K562HSPD1
SERTAD3ENSG00000167565.8327.77230224.862700.543502.445201.49850K562IGF2BP2
SERTAD3ENSG00000167565.8580.41730332.915000.801806.143204.80420K562KIF1C
SERTAD3ENSG00000167565.8495.18850318.697100.635703.045601.90690K562MAK16
SERTAD3ENSG00000167565.8516.81780372.951600.470603.448802.41520K562MBNL1
SERTAD3ENSG00000167565.8226.54860157.539800.524002.188401.40870K562METAP2
SERTAD3ENSG00000167565.8527.25940261.413701.012107.370005.66980K562NAA15
SERTAD3ENSG00000167565.8473.08420190.214001.314405.352603.84420K562PABPN1
SERTAD3ENSG00000167565.8383.60800235.050100.706605.136303.96250K562PPIG
SERTAD3ENSG00000167565.8509.25550226.031101.171803.603201.85970K562PPP1R8
SERTAD3ENSG00000167565.8294.44720202.797100.537902.327501.63750K562PRPF8
SERTAD3ENSG00000167565.81357.05300311.084102.1250029.2053027.42190K562PUS1
SERTAD3ENSG00000167565.81055.73400303.136801.800109.826908.73630K562RBM15
SERTAD3ENSG00000167565.8404.27790173.889801.217104.042102.51020K562SF1
SERTAD3ENSG00000167565.8464.62200312.518200.572004.770703.72430K562SF3A3
SERTAD3ENSG00000167565.8790.22160315.446201.324803.935402.29770K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SERTAD3 is not available on ENCORE database.





2 RBPs can affect the splicing of SERTAD3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESERTAD3ENSG00000167565.8chr19-4094822940948395409477124094799340950121409501820.075000.000170.00267includedK562AQR
SESERTAD3ENSG00000167565.8chr19-4094822940948422409477124094799340950121409501820.154000.000080.03349includedK562PPIL4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SERTAD3 is not avaliable on ENCORE database.