SEC22C

General Information

Gene Name       : SEC22C
Gene ID             : ENSG00000093183.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SEC22C)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SEC22CENSG00000093183.1329.9726.9128.44ENCSR000AEF
HepG2SEC22CENSG00000093183.1315.6222.4819.05ENCSR985KAT
K562SEC22CENSG00000093183.1343.1739.3741.27ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SEC22C is not avaliable on ENCORE database.



Proteins bound to RNA
  • SEC22C RNA is bound by 11 proteins.  







eCLIP assay for SEC22C is not avaliable on ENCORE database.





11 proteins are bound to SEC22C RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr34259310442593146-3'-UTR,intron-Distal4.641695.60103K562UPF1
chr34258980442589874-3'-UTR,intron-Distal3.002643.68882K562FAM120A
chr34260508942605122-3'-UTR,CDS,intron-Distal,intron-Proximal3.444036.61971K562YBX3
chr34259738142597424-3'-UTR,CDS,intron-Distal,intron-Proximal4.853345.17615K562AQR
chr34261053142610567-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.484195.59242K562DDX3X
chr34259355742593587-3'-UTR,intron-Distal4.016163.20319K562UPF1
chr34259738642597446-3'-UTR,CDS,intron-Distal,intron-Proximal5.433747.46483HepG2PRPF8
chr34259016042590209-3'-UTR,intron-Distal4.908234.69961K562SF3B4
chr34259738142597463-3'-UTR,CDS,intron-Distal,intron-Proximal5.2636516.62728K562PRPF8
chr34259740042597488-3'-UTR,CDS,intron-Distal,intron-Proximal3.999723.16051HepG2PPIG
chr34258947342589513-3'-UTR,intron-Distal,intron-Proximal5.5717911.17322K562PUM2
chr34258968842589754-3'-UTR,intron-Distal4.286453.20319K562UPF1
chr34259907242599187-3'-UTR,CDS,intron-Distal3.484056.20049K562YBX3
chr34258951342589576-3'-UTR,intron-Distal,intron-Proximal4.8515119.80961K562PUM2
chr34261046042610531-5'-UTR,CDS,intron-Distal3.255427.12525K562DDX3X
chr34262335642623453-5'-UTR,intron-Distal,intron-Proximal5.7224417.47277K562DDX3X
chr34262333342623403-5'-UTR,intron-Distal,intron-Proximal5.078486.05264HepG2DDX3X
chr34262333642623356-5'-UTR,intron-Distal3.430737.50590K562DDX3X
chr34260101342601155-intron-Distal3.955847.05443K562KHSRP
chr34259727942597334-intron-Distal,intron-Proximal3.942173.12843K562PRPF8
chr34260067442600745-intron-Distal4.177573.55640HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SEC22C is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SEC22C is not available on ENCORE database.

  • 64 RBPs can affect the levels of SEC22C.  








The Knockdown/knockout RNA-Seq assay for SEC22C is not available on ENCORE database.





64 RBPs can affect the gene expression of SEC22C :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SEC22CENSG00000093183.9605.43820886.00220-0.549307.441606.25300HepG2AKAP8L
SEC22CENSG00000093183.9523.98210750.92180-0.519104.150303.43370HepG2BOP1
SEC22CENSG00000093183.9517.16640951.93430-0.8802010.196508.79490HepG2CIRBP
SEC22CENSG00000093183.9749.94970881.67440-0.233502.009001.42990HepG2CKAP4
SEC22CENSG00000093183.9387.18600689.39100-0.832308.257207.12270HepG2CPSF6
SEC22CENSG00000093183.9670.57330815.58070-0.282402.649701.83130HepG2DDX19B
SEC22CENSG00000093183.9505.16930846.05720-0.744005.960504.87870HepG2DDX55
SEC22CENSG00000093183.91070.22890843.678200.343103.573502.82020HepG2DKC1
SEC22CENSG00000093183.9508.85880712.59090-0.485805.935605.03380HepG2DNAJC2
SEC22CENSG00000093183.9387.90040548.87810-0.500802.876601.95790HepG2EIF3D
SEC22CENSG00000093183.9684.240301030.70790-0.591103.750102.95580HepG2EIF4B
SEC22CENSG00000093183.91083.226201287.08510-0.248802.335001.55470HepG2EIF4G1
SEC22CENSG00000093183.9658.810601232.93800-0.9042012.8736011.20830HepG2EIF4G2
SEC22CENSG00000093183.91194.755801569.62760-0.393703.703703.02560HepG2ETF1
SEC22CENSG00000093183.9380.25270558.37830-0.554304.183303.22550HepG2FUBP3
SEC22CENSG00000093183.9807.904901198.96590-0.569508.777907.29090HepG2HNRNPA2B1
SEC22CENSG00000093183.9625.30030807.36570-0.368702.447101.79170HepG2HNRNPC
SEC22CENSG00000093183.9627.404601003.20660-0.677206.953305.88240HepG2HNRNPK
SEC22CENSG00000093183.9950.265901188.35550-0.322603.968603.17210HepG2HNRNPL
SEC22CENSG00000093183.9388.23680745.78850-0.9418010.175609.05530HepG2HNRNPLL
SEC22CENSG00000093183.9461.21770802.02840-0.7982013.7052012.44230HepG2HNRNPU
SEC22CENSG00000093183.9593.81110819.24670-0.464306.561705.48030HepG2ILF2
SEC22CENSG00000093183.9653.43050806.12420-0.303002.947501.89960HepG2KIF1C
SEC22CENSG00000093183.9500.70610793.87990-0.665009.437108.02540HepG2PARN
SEC22CENSG00000093183.9440.40400715.34650-0.699809.115607.82540HepG2PPIL4
SEC22CENSG00000093183.9678.148401061.89010-0.6470011.0329010.08150HepG2PTBP1
SEC22CENSG00000093183.9967.958901234.88460-0.351402.825402.22360HepG2PUF60
SEC22CENSG00000093183.91084.482101309.93270-0.272502.148201.55440HepG2PUM2
SEC22CENSG00000093183.9553.53980898.20200-0.6984012.2303011.09240HepG2PUS1
SEC22CENSG00000093183.9595.819101043.79880-0.8089011.8180010.48450HepG2RBM25
SEC22CENSG00000093183.9271.14230680.59800-1.327804.719602.49590HepG2RBM39
SEC22CENSG00000093183.9438.66180740.67730-0.755705.983804.42060HepG2RCC2
SEC22CENSG00000093183.9381.35720748.79960-0.973402.856401.47850HepG2SF1
SEC22CENSG00000093183.9537.23470738.18940-0.458403.191002.43560HepG2SF3B1
SEC22CENSG00000093183.9938.301101105.64650-0.236802.097201.57100HepG2SF3B4
SEC22CENSG00000093183.91018.058401184.09270-0.218002.019201.40230HepG2SLBP
SEC22CENSG00000093183.9570.00560836.10220-0.552703.440102.35560HepG2SMNDC1
SEC22CENSG00000093183.9539.33130798.00690-0.565203.596201.75770HepG2SND1
SEC22CENSG00000093183.91737.677701481.817400.229702.917802.40740HepG2SRFBP1
SEC22CENSG00000093183.9647.777001386.64940-1.0980034.8582033.07810HepG2SUCLG1
SEC22CENSG00000093183.9414.05380602.05170-0.540103.040702.06000HepG2SUPT6H
SEC22CENSG00000093183.91426.361101037.187500.459605.928705.16000HepG2TAF15
SEC22CENSG00000093183.9298.29980779.34780-1.3855027.5114026.23770HepG2TIAL1
SEC22CENSG00000093183.9661.54110786.28520-0.249201.957201.46690HepG2TRIM56
SEC22CENSG00000093183.9290.63940497.55410-0.775606.204205.05860HepG2UCHL5
SEC22CENSG00000093183.91003.98640841.858500.254002.272101.71780HepG2UTP3
SEC22CENSG00000093183.91188.79020959.006400.309803.984903.36080HepG2ZNF622
SEC22CENSG00000093183.91967.744401405.356600.485509.067608.11640K562AGGF1
SEC22CENSG00000093183.91966.897601544.235000.348903.089802.03620K562AKAP8
SEC22CENSG00000093183.91900.239701462.327500.377803.506202.76680K562AKAP8L
SEC22CENSG00000093183.91235.26180891.630300.470203.967802.92040K562BOP1
SEC22CENSG00000093183.91178.097001505.15490-0.353502.888301.57840K562CIRBP
SEC22CENSG00000093183.93546.800902816.512500.332503.986602.80500K562CELF1
SEC22CENSG00000093183.92208.034401652.977100.417607.308706.31870K562DDX47
SEC22CENSG00000093183.91265.823601551.48180-0.293603.085402.33300K562EIF2S2
SEC22CENSG00000093183.91294.044801069.641100.274702.257801.53350K562EIF3G
SEC22CENSG00000093183.91346.11370964.622000.480704.519603.42390K562FMR1
SEC22CENSG00000093183.91352.811901074.502600.332203.421802.15440K562GLRX3
SEC22CENSG00000093183.91126.840201529.05230-0.440405.812604.50420K562HNRNPU
SEC22CENSG00000093183.92159.062701551.928900.476205.331504.10840K562KIF1C
SEC22CENSG00000093183.91219.05670772.892700.657305.098103.78040K562KRR1
SEC22CENSG00000093183.91356.196301129.693100.263502.235001.50400K562MTPAP
SEC22CENSG00000093183.91733.838301218.593000.508703.549802.52250K562NAA15
SEC22CENSG00000093183.9759.004401433.97310-0.9178017.9575016.34000K562PTBP1
SEC22CENSG00000093183.93469.041802658.339800.383905.190503.69480K562PUM1
SEC22CENSG00000093183.91849.111501450.297000.350402.735802.19510K562PUS1
SEC22CENSG00000093183.91820.470201413.038500.365404.369303.64210K562RBM15
SEC22CENSG00000093183.9551.08990735.60080-0.416603.220202.14680K562RCC2
SEC22CENSG00000093183.9998.363701227.70200-0.298302.639701.80640K562SF3B4
SEC22CENSG00000093183.9799.053101111.65380-0.476304.607803.18850K562SRSF4
SEC22CENSG00000093183.91618.884102180.52900-0.429705.662303.61260K562SUCLG1
SEC22CENSG00000093183.9922.704001330.93980-0.528509.350208.12400K562UPF1
SEC22CENSG00000093183.91403.562601138.847700.301402.474701.64470K562WDR3
SEC22CENSG00000093183.91524.003701184.238100.363805.504904.35230K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SEC22C is not available on ENCORE database.





12 RBPs can affect the splicing of SEC22C :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESEC22CENSG00000093183.9chr3-4259474542594940425896744259014942597421425974870.172000.000000.00005includedK562AQR
SESEC22CENSG00000093183.9chr3-426050144260517842602608426027884261035642610565-0.329000.000000.00000excludedK562PUS1
SESEC22CENSG00000093183.9chr3-426050144260517842602608426027884261035642610565-0.192000.000010.00056excludedK562U2AF1
SESEC22CENSG00000093183.9chr3-425948984259494042589674425901494259742142597487-0.280000.001670.03835excludedHepG2SRSF1
SESEC22CENSG00000093183.9chr3-425947454259494042589462425901494259742142597487-0.314000.001110.08884excludedHepG2SUPV3L1
SESEC22CENSG00000093183.9chr3-4260501442605178426026084260278842610356426105650.077000.000250.04587includedK562EIF4G2
SESEC22CENSG00000093183.9chr3-426052564260547242605014426051784261035642610565-0.174000.000000.00117excludedK562SRSF7
SESEC22CENSG00000093183.9chr3-426050144260517842602608426027884261035642610565-0.142000.000040.00271excludedK562UTP18
SESEC22CENSG00000093183.9chr3-426050144260517842602608426027884261035642610565-0.163000.000000.00021excludedK562RBM15
SESEC22CENSG00000093183.9chr3-426050144260517842602608426027884261035642610565-0.117000.000180.00720excludedK562AGGF1
SESEC22CENSG00000093183.9chr3-4260823542608328426050144260517842610356426105650.053000.002070.03494includedK562HNRNPC
SESEC22CENSG00000093183.9chr3-4262096842621085426103564261056542623337426235150.251000.000000.00016includedK562HNRNPC
MXESEC22CENSG00000093183.9chr3-42605014426051784261035642610565426026084260278842623684426238190.145000.000240.010791includedK562RBM15
MXESEC22CENSG00000093183.9chr3-42605014426051784261035642610565426026084260278842623684426238190.297000.000000.000001includedK562PUS1
MXESEC22CENSG00000093183.9chr3-42605014426051784261035642610565426026084260278842623337426234430.167000.000300.040771includedK562EWSR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SEC22C is not avaliable on ENCORE database.