RP11-597D13.9

General Information

Gene Name : RP11-597D13.9
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-597D13.9)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-597D13.9 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-597D13.9 RNA is bound by 1 proteins.

eCLIP assay for RP11-597D13.9 is not avaliable on ENCORE database.

1 proteins are bound to RP11-597D13.9 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	159118946	159118989	+	intron-Distal	4.32389	3.77802	HepG2	U2AF2
chr4	159122546	159122613	+	intron-Proximal	3.70134	8.98256	HepG2	U2AF2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-597D13.9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-597D13.9 is not available on ENCORE database.
48 RBPs can affect the levels of RP11-597D13.9.

The Knockdown/knockout RNA-Seq assay for RP11-597D13.9 is not available on ENCORE database.

48 RBPs can affect the gene expression of RP11-597D13.9 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-597D13.9	ENSG00000248429.1	197.07310	141.00080	0.48290	2.12830	1.58070	HepG2	ACO1
RP11-597D13.9	ENSG00000248429.1	569.52470	322.64230	0.81970	7.89230	6.94540	HepG2	BOP1
RP11-597D13.9	ENSG00000248429.1	227.31120	140.95690	0.68930	4.16920	3.38520	HepG2	CKAP4
RP11-597D13.9	ENSG00000248429.1	128.92740	296.20890	-1.20010	8.87670	7.70670	HepG2	CPSF6
RP11-597D13.9	ENSG00000248429.1	360.94200	122.84420	1.55480	16.50670	15.01980	HepG2	DDX21
RP11-597D13.9	ENSG00000248429.1	212.01530	336.36510	-0.66590	2.58270	1.64030	HepG2	DDX59
RP11-597D13.9	ENSG00000248429.1	274.92530	94.70470	1.53740	12.04650	10.73840	HepG2	EIF4A3
RP11-597D13.9	ENSG00000248429.1	297.76110	193.35970	0.62280	4.19240	3.20200	HepG2	EIF4G1
RP11-597D13.9	ENSG00000248429.1	91.77520	185.21980	-1.01310	3.35420	2.46300	HepG2	EIF4G2
RP11-597D13.9	ENSG00000248429.1	242.63210	150.28280	0.69100	2.91160	1.76730	HepG2	FUS
RP11-597D13.9	ENSG00000248429.1	176.69280	95.52740	0.88720	3.85460	3.04770	HepG2	FXR1
RP11-597D13.9	ENSG00000248429.1	150.18570	88.62920	0.76080	2.79750	2.12880	HepG2	G3BP1
RP11-597D13.9	ENSG00000248429.1	178.46580	98.85030	0.85220	3.73470	2.67950	HepG2	GEMIN5
RP11-597D13.9	ENSG00000248429.1	175.92580	89.71360	0.97150	4.30440	3.44910	HepG2	HNRNPK
RP11-597D13.9	ENSG00000248429.1	205.66310	90.09440	1.19070	6.82150	5.80680	HepG2	IGF2BP2
RP11-597D13.9	ENSG00000248429.1	159.39640	90.61060	0.81480	2.79970	1.79160	HepG2	KHSRP
RP11-597D13.9	ENSG00000248429.1	465.24360	267.70520	0.79720	5.08830	3.94790	HepG2	LARP4
RP11-597D13.9	ENSG00000248429.1	194.47990	95.56060	1.02500	5.05980	4.18140	HepG2	MAGOH
RP11-597D13.9	ENSG00000248429.1	220.62390	96.09970	1.19890	5.58850	4.71720	HepG2	MATR3
RP11-597D13.9	ENSG00000248429.1	306.80140	199.85370	0.61830	3.37550	2.48560	HepG2	MSI2
RP11-597D13.9	ENSG00000248429.1	22.83470	100.98360	-2.14480	8.59450	6.98750	HepG2	PABPC1
RP11-597D13.9	ENSG00000248429.1	148.20930	82.88470	0.83840	3.70950	3.02830	HepG2	PCBP1
RP11-597D13.9	ENSG00000248429.1	236.95170	149.54970	0.66390	2.58290	1.40060	HepG2	PRPF6
RP11-597D13.9	ENSG00000248429.1	170.66780	84.33430	1.01690	5.19500	4.49430	HepG2	PTBP1
RP11-597D13.9	ENSG00000248429.1	244.04070	143.61650	0.76480	5.14640	4.35340	HepG2	PUS1
RP11-597D13.9	ENSG00000248429.1	136.75440	82.89790	0.72210	2.48840	1.84520	HepG2	RBM25
RP11-597D13.9	ENSG00000248429.1	211.92720	93.85930	1.17490	3.64710	3.04290	HepG2	NELFE
RP11-597D13.9	ENSG00000248429.1	167.81480	87.41110	0.94090	4.50050	3.73900	HepG2	RECQL
RP11-597D13.9	ENSG00000248429.1	432.91550	208.26100	1.05560	9.33600	8.20030	HepG2	RPLP0
RP11-597D13.9	ENSG00000248429.1	240.15780	108.03330	1.15240	7.81850	6.84820	HepG2	RPS19
RP11-597D13.9	ENSG00000248429.1	208.57190	135.81550	0.61880	2.69540	1.90450	HepG2	RPS2
RP11-597D13.9	ENSG00000248429.1	189.80760	110.92600	0.77480	3.05410	2.21440	HepG2	RPS3A
RP11-597D13.9	ENSG00000248429.1	301.33630	122.36940	1.30000	3.79690	2.15800	HepG2	SF1
RP11-597D13.9	ENSG00000248429.1	167.58910	317.19160	-0.92040	4.26300	3.40470	HepG2	SF3B1
RP11-597D13.9	ENSG00000248429.1	713.09630	352.92800	1.01460	7.63490	6.32910	HepG2	SNRNP70
RP11-597D13.9	ENSG00000248429.1	174.00100	278.47190	-0.67840	4.60230	4.00410	HepG2	SRFBP1
RP11-597D13.9	ENSG00000248429.1	314.13260	91.65170	1.77700	19.67730	18.65810	HepG2	SRSF1
RP11-597D13.9	ENSG00000248429.1	323.81130	241.75610	0.42150	2.28250	1.80680	HepG2	SSB
RP11-597D13.9	ENSG00000248429.1	298.44320	195.45910	0.61050	2.96630	1.63940	HepG2	SSRP1
RP11-597D13.9	ENSG00000248429.1	42.56010	96.48380	-1.18080	4.23060	2.83910	HepG2	STIP1
RP11-597D13.9	ENSG00000248429.1	273.12430	208.30180	0.39080	2.11780	1.55990	HepG2	SUCLG1
RP11-597D13.9	ENSG00000248429.1	108.69260	166.74240	-0.61740	2.40180	1.52130	HepG2	SUPT6H
RP11-597D13.9	ENSG00000248429.1	149.29410	82.37200	0.85780	3.76540	3.12780	HepG2	TAF15
RP11-597D13.9	ENSG00000248429.1	348.37690	191.98620	0.85950	3.42600	2.24390	HepG2	TBRG4
RP11-597D13.9	ENSG00000248429.1	685.73570	156.87940	2.12790	31.86510	30.50260	HepG2	TIAL1
RP11-597D13.9	ENSG00000248429.1	138.35630	211.24800	-0.61050	2.49420	1.89600	HepG2	U2AF1
RP11-597D13.9	ENSG00000248429.1	130.28890	81.78240	0.67180	2.44490	1.73130	HepG2	UCHL5
RP11-597D13.9	ENSG00000248429.1	48.82500	99.35510	-1.02500	3.40910	2.18380	HepG2	XPO5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-597D13.9 is not available on ENCORE database.

6 RBPs can affect the splicing of RP11-597D13.9 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-597D13.9	ENSG00000248429.1	chr4	+	159098066	159098198	159093728	159094092	159100812	159101078	0.72600	0.00457	0.04940	included	HepG2	U2AF2
SE	RP11-597D13.9	ENSG00000248429.1	chr4	+	159119939	159120022	159100812	159100887	159120239	159120638	-0.26600	0.00263	0.03153	excluded	HepG2	U2AF2
SE	RP11-597D13.9	ENSG00000248429.1	chr4	+	159119939	159120022	159100812	159100887	159120239	159120638	0.76600	0.00176	0.08673	included	HepG2	AKAP1
SE	RP11-597D13.9	ENSG00000248429.1	chr4	+	159098066	159098198	159093728	159094092	159100812	159101078	0.62800	0.00017	0.03100	included	HepG2	HNRNPUL1
SE	RP11-597D13.9	ENSG00000248429.1	chr4	+	159119939	159120022	159100812	159100887	159120239	159120638	0.45500	0.00025	0.02974	included	HepG2	SUPV3L1
SE	RP11-597D13.9	ENSG00000248429.1	chr4	+	159119939	159120022	159100812	159100887	159120239	159120638	0.52900	0.00021	0.04620	included	HepG2	DDX55
SE	RP11-597D13.9	ENSG00000248429.1	chr4	+	159098063	159098198	159092524	159092632	159100812	159100887	0.68300	0.00029	0.01646	included	HepG2	HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-597D13.9

General Information

Functions

Localization

Domains (AlphaFold: RP11-597D13.9)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-597D13.9 is not avaliable on ENCORE database.

1 proteins are bound to RP11-597D13.9 RNA:

eCLIP assay for RP11-597D13.9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-597D13.9 is not available on ENCORE database.

48 RBPs can affect the gene expression of RP11-597D13.9 :

The Knockdown/knockout RNA-Seq assay for RP11-597D13.9 is not available on ENCORE database.

6 RBPs can affect the splicing of RP11-597D13.9 :

The Knockdown/knockout RNA-Seq assay for RP11-597D13.9 is not avaliable on ENCORE database.