RP11-196G11.1

General Information

Gene Name : RP11-196G11.1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-196G11.1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-196G11.1 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-196G11.1 RNA is bound by 21 proteins.

eCLIP assay for RP11-196G11.1 is not avaliable on ENCORE database.

21 proteins are bound to RP11-196G11.1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	31097959	31097992	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.17689	3.79199	HepG2	PPIG
chr16	31097498	31097650	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.00351	12.63950	K562	SF3B4
chr16	31094818	31094874	-	3'-UTR,intron-Distal	4.59734	4.21358	HepG2	U2AF2
chr16	31095089	31095147	-	3'-UTR,CDS,intron-Distal	5.81253	5.47569	HepG2	U2AF2
chr16	31096461	31096578	-	3'-UTR,CDS,intron-Distal	3.15880	4.47499	HepG2	PPIG
chr16	31098990	31099042	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.21382	5.37254	HepG2	SF3B4
chr16	31097454	31097531	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.01614	8.88193	HepG2	EFTUD2
chr16	31095989	31096041	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.71457	3.12827	HepG2	U2AF2
chr16	31097914	31097987	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.49258	7.89388	HepG2	PRPF8
chr16	31098960	31099077	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.48424	10.90686	K562	SF3B4
chr16	31096015	31096074	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.40068	8.26501	K562	SF3B4
chr16	31098121	31098163	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.05493	4.41267	HepG2	PPIG
chr16	31099001	31099083	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.10320	9.84788	HepG2	SF3A3
chr16	31099142	31099203	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.36763	5.85035	HepG2	SF3B4
chr16	31095876	31095915	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.59012	4.68902	HepG2	PPIG
chr16	31099134	31099186	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.14339	4.84268	K562	SF3B4
chr16	31097799	31097861	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.92075	3.56713	HepG2	SF3B4
chr16	31096022	31096076	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.76228	6.24165	HepG2	SF3B4
chr16	31102321	31102436	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	4.87834	48.96150	HepG2	LARP4
chr16	31102369	31102461	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.70634	10.99341	HepG2	DDX6
chr16	31106038	31106098	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.27631	10.17596	K562	DDX3X
chr16	31102357	31102429	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.94909	5.19548	K562	IGF2BP2
chr16	31102343	31102525	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.81970	10.35986	HepG2	UPF1
chr16	31102347	31102432	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.81054	3.89838	K562	PABPC4
chr16	31102433	31102488	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.43099	8.62271	HepG2	DDX55
chr16	31102429	31102533	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.25735	8.10313	K562	IGF2BP2
chr16	31105945	31106053	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.53108	37.05711	HepG2	RPS3
chr16	31106053	31106091	-	5'-UTR,intron-Distal,intron-Proximal	4.18345	8.51824	HepG2	RPS3
chr16	31102369	31102433	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	4.05203	23.08790	HepG2	DDX55
chr16	31106053	31106116	-	5'-UTR,intron-Distal,intron-Proximal	5.64795	82.14449	HepG2	DDX3X
chr16	31102324	31102429	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.65003	6.21364	HepG2	AKAP1
chr16	31102436	31102508	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.00005	40.49070	HepG2	LARP4
chr16	31105928	31106053	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.82449	400.00000	HepG2	DDX3X
chr16	31102334	31102415	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.49352	4.36257	HepG2	IGF2BP3
chr16	31102380	31102508	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.99128	18.37603	HepG2	RPS3
chr16	31106044	31106085	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.40101	9.44539	HepG2	LARP4
chr16	31102626	31102662	-	3'-UTR,CDS,intron-Distal	3.74429	7.25768	HepG2	RPS3
chr16	31105894	31105941	-	CDS,intron-Distal,intron-Proximal	4.90175	7.02113	HepG2	RPS3
chr16	31104674	31104741	-	5'-UTR,CDS,intron-Distal	3.32610	3.23853	K562	IGF2BP2
chr16	31104678	31104746	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.42060	17.12216	HepG2	RPS3
chr16	31105876	31105894	-	CDS,intron-Distal,intron-Proximal	4.28528	5.42514	HepG2	RPS3
chr16	31102465	31102554	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.96188	8.93416	K562	SND1
chr16	31102508	31102560	-	3'-UTR,CDS,intron-Distal	3.97684	30.15955	HepG2	LARP4
chr16	31102560	31102664	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.30240	22.30415	HepG2	SND1
chr16	31102572	31102626	-	3'-UTR,CDS,intron-Distal	3.04359	5.89272	HepG2	RPS3
chr16	31105832	31105905	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.66328	10.32702	HepG2	AQR
chr16	31105877	31105923	-	CDS,intron-Distal,intron-Proximal	3.21009	10.08958	HepG2	LARP4
chr16	31105897	31105923	-	CDS,intron-Distal,intron-Proximal	5.06227	13.86840	HepG2	DDX3X
chr16	31105937	31106038	-	CDS,intron-Distal,intron-Proximal	3.39767	8.49146	K562	DDX3X
chr16	31104630	31104688	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.48588	4.05694	K562	IGF2BP1
chr16	31102555	31102605	-	3'-UTR,CDS,intron-Distal	4.01617	9.82590	K562	IGF2BP2
chr16	31102560	31102612	-	3'-UTR,CDS,intron-Distal	3.74034	14.37337	HepG2	LARP4
chr16	31102554	31102665	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.59577	11.78202	K562	SND1
chr16	31104702	31104737	-	5'-UTR,CDS,intron-Distal	3.82624	11.49033	HepG2	LARP4
chr16	31104695	31104822	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.13963	6.23935	HepG2	AQR
chr16	31105876	31105897	-	CDS,intron-Distal,intron-Proximal	4.44207	27.86787	HepG2	DDX3X
chr16	31104631	31104645	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.35242	7.49464	HepG2	SND1
chr16	31105881	31105931	-	CDS,intron-Distal,intron-Proximal	3.47844	4.46401	K562	DDX3X
chr16	31104632	31104678	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.22919	5.51805	K562	SND1
chr16	31105826	31105903	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.50796	13.31181	HepG2	PRPF8
chr16	31104703	31104742	-	5'-UTR,CDS,intron-Distal	3.80473	26.84125	HepG2	DDX3X
chr16	31102638	31102709	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.65420	3.67894	HepG2	AQR
chr16	31099364	31099431	-	intron-Distal	4.41183	7.14115	HepG2	XPO5
chr16	31097566	31097631	-	intron-Distal,intron-Proximal	3.15078	5.47500	HepG2	PPIG
chr16	31097504	31097652	-	intron-Distal,intron-Proximal	3.96964	12.08124	HepG2	SF3B4
chr16	31095756	31095826	-	intron-Distal,intron-Proximal	3.74856	3.17235	HepG2	HNRNPK
chr16	31097531	31097612	-	intron-Distal,intron-Proximal	3.71779	7.20533	HepG2	EFTUD2
chr16	31102206	31102283	-	3'-UTR,intron-Distal	4.01832	10.70932	K562	IGF2BP2
chr16	31102207	31102280	-	3'-UTR,intron-Distal	4.53713	24.56679	HepG2	LARP4
chr16	31102214	31102281	-	3'-UTR,intron-Distal	4.01703	7.86245	HepG2	IGF2BP3
chr16	31099042	31099099	-	intron-Distal,intron-Proximal	4.21656	6.81982	HepG2	SF3B4
chr16	31102231	31102281	-	3'-UTR,intron-Distal	3.59928	6.60130	HepG2	IGF2BP1
chr16	31105705	31105820	-	CDS,intron-Distal	4.43117	7.43035	HepG2	EFTUD2
chr16	31105826	31105878	-	5'-UTR,intron-Distal,intron-Proximal	4.19963	4.00320	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-196G11.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-196G11.1 is not available on ENCORE database.
37 RBPs can affect the levels of RP11-196G11.1.

The Knockdown/knockout RNA-Seq assay for RP11-196G11.1 is not available on ENCORE database.

37 RBPs can affect the gene expression of RP11-196G11.1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-196G11.1	ENSG00000255439.2	0.93140	52.24210	-5.80970	15.66870	14.47240	HepG2	ACO1
RP11-196G11.1	ENSG00000255439.2	6.00150	43.85970	-2.86950	6.72470	2.96190	HepG2	AGGF1
RP11-196G11.1	ENSG00000255439.2	24.55150	86.99350	-1.82510	5.24900	4.54530	HepG2	AKAP1
RP11-196G11.1	ENSG00000255439.2	10.63550	52.24910	-2.29650	3.59220	2.85160	HepG2	CKAP4
RP11-196G11.1	ENSG00000255439.2	19.72010	0.00000	99999.99990	3.73650	2.40010	HepG2	DDX1
RP11-196G11.1	ENSG00000255439.2	39.56720	83.31270	-1.07420	2.49150	1.89500	HepG2	DDX3X
RP11-196G11.1	ENSG00000255439.2	205.04700	71.61560	1.51750	8.90120	7.85830	HepG2	DDX6
RP11-196G11.1	ENSG00000255439.2	7.54710	39.02860	-2.37050	4.57540	3.54510	HepG2	EIF4G2
RP11-196G11.1	ENSG00000255439.2	0.58150	40.07330	-6.10680	2.11370	1.33530	HepG2	GEMIN5
RP11-196G11.1	ENSG00000255439.2	45.41930	0.00000	99999.99990	12.22780	10.86000	HepG2	HNRNPC
RP11-196G11.1	ENSG00000255439.2	117.63780	37.63150	1.64420	8.39900	7.28300	HepG2	HNRNPL
RP11-196G11.1	ENSG00000255439.2	20.02470	0.00000	99999.99990	2.94820	2.32420	HepG2	HNRNPU
RP11-196G11.1	ENSG00000255439.2	37.18650	0.00000	99999.99990	12.33230	10.90710	HepG2	ILF2
RP11-196G11.1	ENSG00000255439.2	39.19050	77.20300	-0.97820	2.23470	1.66400	HepG2	MATR3
RP11-196G11.1	ENSG00000255439.2	9.52450	79.01230	-3.05240	7.32910	6.32130	HepG2	NCBP2
RP11-196G11.1	ENSG00000255439.2	24.45140	0.00000	99999.99990	7.61690	6.32250	HepG2	PARN
RP11-196G11.1	ENSG00000255439.2	114.94830	51.43600	1.16000	3.27830	2.62840	HepG2	PCBP1
RP11-196G11.1	ENSG00000255439.2	12.94050	49.69120	-1.94110	5.11840	2.76030	HepG2	PES1
RP11-196G11.1	ENSG00000255439.2	26.64520	91.76010	-1.78400	2.65660	2.14640	HepG2	RBM22
RP11-196G11.1	ENSG00000255439.2	1.09830	41.14930	-5.22750	5.57540	2.63320	HepG2	RBM34
RP11-196G11.1	ENSG00000255439.2	76.08580	42.14950	0.85200	2.18360	1.34350	HepG2	SMNDC1
RP11-196G11.1	ENSG00000255439.2	32.58260	103.63880	-1.66940	3.11750	2.59680	HepG2	SRFBP1
RP11-196G11.1	ENSG00000255439.2	77.25790	38.59570	1.00110	2.70860	2.08720	HepG2	SRSF5
RP11-196G11.1	ENSG00000255439.2	11.14030	89.98140	-3.01380	14.49790	13.51040	HepG2	SSB
RP11-196G11.1	ENSG00000255439.2	78.62000	0.00000	99999.99990	23.62980	22.18050	HepG2	TRIM56
RP11-196G11.1	ENSG00000255439.2	88.15400	38.18740	1.20680	3.62520	2.61140	HepG2	TUFM
RP11-196G11.1	ENSG00000255439.2	95.47920	40.41600	1.24020	2.10090	1.37720	HepG2	UBE2L3
RP11-196G11.1	ENSG00000255439.2	0.00000	45.29380	-99999.99999	7.71530	6.02390	HepG2	XRCC6
RP11-196G11.1	ENSG00000255439.2	6.32950	27.97550	-2.14400	2.22090	1.68580	K562	AQR
RP11-196G11.1	ENSG00000255439.2	6.08520	33.12540	-2.44460	4.54330	1.99350	K562	AUH
RP11-196G11.1	ENSG00000255439.2	52.12320	18.54130	1.49110	2.73790	1.70090	K562	DDX3X
RP11-196G11.1	ENSG00000255439.2	0.00000	15.26710	-99999.99999	3.85100	2.64090	K562	EIF3A
RP11-196G11.1	ENSG00000255439.2	0.00000	16.37590	-99999.99999	4.34290	1.82290	K562	EIF4G1
RP11-196G11.1	ENSG00000255439.2	27.01860	0.69440	5.28190	7.73640	6.17870	K562	EIF4G2
RP11-196G11.1	ENSG00000255439.2	35.65510	7.39820	2.26880	3.92070	2.61230	K562	IGF2BP2
RP11-196G11.1	ENSG00000255439.2	0.00000	15.68790	-99999.99999	4.14260	2.31690	K562	ILF3
RP11-196G11.1	ENSG00000255439.2	0.00000	25.25240	-99999.99999	4.03950	2.09950	K562	RBM17
RP11-196G11.1	ENSG00000255439.2	38.08270	7.28240	2.38660	2.54690	1.76540	K562	TIA1
RP11-196G11.1	ENSG00000255439.2	27.73960	0.49390	5.81160	4.48950	2.21390	K562	TUFM
RP11-196G11.1	ENSG00000255439.2	44.45520	0.00000	99999.99990	12.74010	9.35650	K562	XPO5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-196G11.1 is not available on ENCORE database.

5 RBPs can affect the splicing of RP11-196G11.1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	RP11-196G11.1	ENSG00000255439.2	chr16	-	31104632	31104803	31104632	31104742	31105877	31105923	-0.05100	0.00017	0.09550	shorter	HepG2	DDX3X
A3SS	RP11-196G11.1	ENSG00000255439.2	chr16	-	31104632	31104803	31104632	31104742	31105877	31105923	0.06700	0.00004	0.02842	longer	HepG2	FUBP3
A3SS	RP11-196G11.1	ENSG00000255439.2	chr16	-	31104632	31104803	31104632	31104742	31105877	31106277	0.09500	0.00000	0.00207	longer	HepG2	SRSF9
A3SS	RP11-196G11.1	ENSG00000255439.2	chr16	-	31104632	31104803	31104632	31104742	31105877	31106277	0.19400	0.00000	0.00011	longer	K562	HNRNPC
A3SS	RP11-196G11.1	ENSG00000255439.2	chr16	-	31104632	31104803	31104632	31104742	31105877	31106277	0.09500	0.00000	0.00005	longer	HepG2	PCBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-196G11.1

General Information

Functions

Localization

Domains (AlphaFold: RP11-196G11.1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-196G11.1 is not avaliable on ENCORE database.

21 proteins are bound to RP11-196G11.1 RNA:

eCLIP assay for RP11-196G11.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-196G11.1 is not available on ENCORE database.

37 RBPs can affect the gene expression of RP11-196G11.1 :

The Knockdown/knockout RNA-Seq assay for RP11-196G11.1 is not available on ENCORE database.

5 RBPs can affect the splicing of RP11-196G11.1 :

The Knockdown/knockout RNA-Seq assay for RP11-196G11.1 is not avaliable on ENCORE database.