RNF139-AS1

General Information

Gene Name       : RNF139-AS1
Gene ID             : ENSG00000245149.3
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RNF139-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF139-AS1ENSG00000245149.33.933.373.65ENCSR000AEF
HepG2RNF139-AS1ENSG00000245149.31.582.602.09ENCSR985KAT
K562RNF139-AS1ENSG00000245149.35.345.505.42ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF139-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF139-AS1 RNA is bound by 4 proteins.  







eCLIP assay for RNF139-AS1 is not avaliable on ENCORE database.





4 proteins are bound to RNF139-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr8125486413125486465-intron-Distal,intron-Proximal4.7701312.16470K562RBM15
chr8125486577125486634-intron-Distal,intron-Proximal3.260174.94600K562RBM15
chr8125486356125486403-intron-Distal3.284143.04831K562RBM15
chr8125486366125486453-intron-Distal,intron-Proximal3.528705.53307K562ZNF622
chr8125484979125485030-intron-Distal,intron-Proximal4.154874.04290K562CSTF2T
chr8125486487125486542-intron-Distal,intron-Proximal5.523879.33028K562RBM15
chr8125486628125486711-intron-Distal,intron-Proximal3.434833.43213K562UCHL5
chr8125486646125486688-intron-Distal,intron-Proximal3.912383.15006K562RBM15
chr8125486755125486792-intron-Distal4.221074.48994K562RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF139-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF139-AS1 is not available on ENCORE database.

  • 61 RBPs can affect the levels of RNF139-AS1.  








The Knockdown/knockout RNA-Seq assay for RNF139-AS1 is not available on ENCORE database.





61 RBPs can affect the gene expression of RNF139-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF139-AS1ENSG00000245149.331.7175061.74000-0.960901.975701.46230HepG2BOP1
RNF139-AS1ENSG00000245149.379.2580037.248901.089302.508601.94310HepG2EIF2S1
RNF139-AS1ENSG00000245149.3125.8600040.081301.650708.024604.90060HepG2EXOSC5
RNF139-AS1ENSG00000245149.383.7424042.792900.968501.966301.42760HepG2NCBP2
RNF139-AS1ENSG00000245149.379.1180042.822200.885502.219301.71870HepG2PTBP1
RNF139-AS1ENSG00000245149.344.6862085.79580-0.941102.601201.95030HepG2PUM2
RNF139-AS1ENSG00000245149.3107.9168067.011900.687302.250301.77690HepG2SSB
RNF139-AS1ENSG00000245149.374.2189027.688901.422404.819903.81300HepG2UCHL5
RNF139-AS1ENSG00000245149.3255.55750368.08850-0.526402.954701.72830K562AARS
RNF139-AS1ENSG00000245149.3954.78760658.847800.535107.427506.56280K562AGGF1
RNF139-AS1ENSG00000245149.3945.39050685.569000.463504.154803.35110K562AKAP8L
RNF139-AS1ENSG00000245149.3426.62990635.28960-0.574404.715703.02920K562APOBEC3C
RNF139-AS1ENSG00000245149.3791.24640508.480100.637805.274304.50900K562AQR
RNF139-AS1ENSG00000245149.3429.90490291.229200.561803.789502.51640K562CCAR1
RNF139-AS1ENSG00000245149.3577.05290418.209500.464403.202001.56800K562CEBPZ
RNF139-AS1ENSG00000245149.31038.12230685.589500.598505.220004.15060K562CPSF6
RNF139-AS1ENSG00000245149.31108.30370885.450000.323802.319601.42690K562CELF1
RNF139-AS1ENSG00000245149.3180.29510288.32590-0.677304.753203.00840K562DDX27
RNF139-AS1ENSG00000245149.3262.55000760.97830-1.5353026.3362024.51900K562DDX47
RNF139-AS1ENSG00000245149.3215.11820333.58530-0.632904.551603.65730K562EIF2S2
RNF139-AS1ENSG00000245149.3110.95650296.21600-1.416706.557604.95470K562EIF3A
RNF139-AS1ENSG00000245149.3119.80630253.65170-1.082108.568507.17400K562EIF3G
RNF139-AS1ENSG00000245149.3207.05500299.16900-0.530902.729001.91370K562EIF4A3
RNF139-AS1ENSG00000245149.3486.24570349.595000.475902.703101.59220K562FKBP4
RNF139-AS1ENSG00000245149.3134.09710311.12590-1.2142011.6151010.46250K562FXR1
RNF139-AS1ENSG00000245149.3341.67500444.51810-0.379602.086001.42320K562GRSF1
RNF139-AS1ENSG00000245149.31225.67380727.668500.752102.706901.50700K562HNRNPA2B1
RNF139-AS1ENSG00000245149.3620.30810368.171500.752508.989607.39000K562HNRNPU
RNF139-AS1ENSG00000245149.3411.43500685.04080-0.735507.087305.82380K562HSPD1
RNF139-AS1ENSG00000245149.31075.40680727.532100.563706.385905.01380K562KIF1C
RNF139-AS1ENSG00000245149.3796.55910559.035900.510702.966501.99570K562KRR1
RNF139-AS1ENSG00000245149.31588.00570828.381000.938704.216401.62210K562LARP4
RNF139-AS1ENSG00000245149.3595.15960408.501800.542803.756001.99050K562LIN28B
RNF139-AS1ENSG00000245149.3227.74080382.62270-0.748505.754604.52780K562MAGOH
RNF139-AS1ENSG00000245149.3272.68150381.86900-0.485902.997902.03370K562MATR3
RNF139-AS1ENSG00000245149.31035.36410571.275000.857807.863506.07840K562NAA15
RNF139-AS1ENSG00000245149.3798.49290510.473400.6453010.234308.92220K562NSUN2
RNF139-AS1ENSG00000245149.3592.93120396.592900.580104.402902.40300K562NUSAP1
RNF139-AS1ENSG00000245149.31912.76140636.185401.588004.761603.36670K562PABPN1
RNF139-AS1ENSG00000245149.3674.68570393.293100.778508.394905.87710K562PHF6
RNF139-AS1ENSG00000245149.3627.38670364.306700.784107.069104.49830K562PKM
RNF139-AS1ENSG00000245149.3130.83990230.49550-0.816903.494202.65020K562PRPF8
RNF139-AS1ENSG00000245149.3635.22340361.205900.814308.404106.64780K562PSIP1
RNF139-AS1ENSG00000245149.3194.82160371.73080-0.932108.884407.73600K562PTBP1
RNF139-AS1ENSG00000245149.3507.78240785.55190-0.629506.563405.30610K562PUF60
RNF139-AS1ENSG00000245149.32287.58780679.839301.7505051.4536049.03550K562PUS1
RNF139-AS1ENSG00000245149.31096.52480662.448300.7270011.8630010.64060K562RBM15
RNF139-AS1ENSG00000245149.3262.72060356.52640-0.440502.337801.57010K562RBM22
RNF139-AS1ENSG00000245149.3496.16000329.487300.590504.752103.44920K562RCC2
RNF139-AS1ENSG00000245149.370.56190234.70780-1.733909.559908.02840K562RPS19
RNF139-AS1ENSG00000245149.3399.75670724.00100-0.856907.890606.09110K562RPS3
RNF139-AS1ENSG00000245149.3682.13750503.677700.437503.832202.88150K562SF3A3
RNF139-AS1ENSG00000245149.3276.49710378.21620-0.451902.812001.94930K562SF3B4
RNF139-AS1ENSG00000245149.31274.47230668.245300.931402.498301.35460K562SNRNP200
RNF139-AS1ENSG00000245149.3684.53790516.026000.407603.928402.83260K562SRPK2
RNF139-AS1ENSG00000245149.3234.05320364.40350-0.638704.280903.40680K562SRSF1
RNF139-AS1ENSG00000245149.3639.31590429.090500.575104.469502.96250K562SRSF7
RNF139-AS1ENSG00000245149.3814.45510606.367000.425502.706001.47240K562STAU1
RNF139-AS1ENSG00000245149.3220.97360368.23400-0.736705.755904.56450K562SYNCRIP
RNF139-AS1ENSG00000245149.3634.80360347.427700.869508.299606.61000K562TIAL1
RNF139-AS1ENSG00000245149.3614.85150369.023000.736406.842205.19670K562TRIM56
RNF139-AS1ENSG00000245149.3705.40520463.145300.606905.997904.68130K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF139-AS1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RNF139-AS1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RNF139-AS1 is not avaliable on ENCORE database.