RGPD6

General Information

Gene Name       : RGPD6
Gene ID             : ENSG00000183054.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RGPD6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RGPD6ENSG00000183054.117.006.236.62ENCSR000AEF
HepG2RGPD6ENSG00000183054.117.2814.1810.73ENCSR985KAT
K562RGPD6ENSG00000183054.110.680.700.69ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RGPD6 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on RGPD6 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for RGPD6 is not avaliable on ENCORE database.






NO known proteins are bound to RGPD6 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for RGPD6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RGPD6 is not available on ENCORE database.

  • 49 RBPs can affect the levels of RGPD6.  








The Knockdown/knockout RNA-Seq assay for RGPD6 is not available on ENCORE database.





49 RBPs can affect the gene expression of RGPD6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RGPD6ENSG00000183054.71939.813601251.548200.632102.009301.54750HepG2AKAP1
RGPD6ENSG00000183054.71349.304301853.27830-0.457907.897406.83390HepG2AUH
RGPD6ENSG00000183054.71213.683801823.03320-0.586902.686102.09590HepG2BOP1
RGPD6ENSG00000183054.7735.615701080.23260-0.554302.290301.36550HepG2YBX3
RGPD6ENSG00000183054.71193.884001547.03460-0.373804.219403.45660HepG2CELF1
RGPD6ENSG00000183054.71925.210801199.196500.682802.153501.59470HepG2DDX3X
RGPD6ENSG00000183054.71903.072001065.241600.837003.798502.99770HepG2EIF4B
RGPD6ENSG00000183054.72612.583302127.738100.296103.135602.50190HepG2ETF1
RGPD6ENSG00000183054.7814.03740556.891000.547604.782002.11770HepG2EXOSC5
RGPD6ENSG00000183054.73045.837201676.434700.861302.533001.56350HepG2FTO
RGPD6ENSG00000183054.71586.93270901.571600.8156013.5736011.88970HepG2FUBP3
RGPD6ENSG00000183054.71757.460301086.625400.693502.551801.69870HepG2G3BP2
RGPD6ENSG00000183054.71693.215001035.830000.708902.265601.62970HepG2HNRNPK
RGPD6ENSG00000183054.71980.70060976.423601.020303.170502.11510HepG2IGF2BP3
RGPD6ENSG00000183054.72349.444001514.221500.633604.777203.02190HepG2ILF3
RGPD6ENSG00000183054.72213.409401605.465600.463202.691401.95250HepG2NSUN2
RGPD6ENSG00000183054.71680.679601012.802400.730602.593201.89230HepG2PABPC4
RGPD6ENSG00000183054.7781.075501278.62810-0.711101.836001.32440HepG2PCBP1
RGPD6ENSG00000183054.71677.791201250.050700.424506.585005.44960HepG2PRPF4
RGPD6ENSG00000183054.72385.565601670.384200.514107.535206.45270HepG2PUM2
RGPD6ENSG00000183054.72991.981501408.994901.0863019.2736017.83390HepG2QKI
RGPD6ENSG00000183054.72546.565601054.803001.271503.789402.96880HepG2RAVER1
RGPD6ENSG00000183054.72302.950401278.812200.8486017.6055016.00610HepG2RBM25
RGPD6ENSG00000183054.71741.007101348.694000.368305.504804.67200HepG2RECQL
RGPD6ENSG00000183054.7978.71520799.800900.291102.072801.53450HepG2RPS19
RGPD6ENSG00000183054.71098.60920776.227400.501003.289402.44150HepG2RRP9
RGPD6ENSG00000183054.71727.394501354.508100.350702.557601.98510HepG2SF3B4
RGPD6ENSG00000183054.73871.016801994.358200.956709.942008.46720HepG2SNRNP70
RGPD6ENSG00000183054.72825.547302008.676400.492209.569108.79060HepG2SRFBP1
RGPD6ENSG00000183054.71579.574601012.840000.641005.502704.60090HepG2SUPV3L1
RGPD6ENSG00000183054.73659.129301270.986801.5255051.1330049.11830HepG2TAF15
RGPD6ENSG00000183054.72172.687901167.706300.8957020.5107018.31470HepG2TIA1
RGPD6ENSG00000183054.7971.96850653.124700.573504.224402.30430HepG2TROVE2
RGPD6ENSG00000183054.71960.568001538.297000.349802.596201.75190HepG2TUFM
RGPD6ENSG00000183054.72854.818001128.525601.3389033.5205031.26150HepG2U2AF1
RGPD6ENSG00000183054.7986.602201418.50080-0.523808.508106.78740HepG2UTP18
RGPD6ENSG00000183054.7234.9479078.925001.573703.351902.71860K562AQR
RGPD6ENSG00000183054.743.01840115.77240-1.428302.989501.75610K562CCDC124
RGPD6ENSG00000183054.78.4105074.26130-3.1423011.014208.82170K562CPEB4
RGPD6ENSG00000183054.710.8603069.43180-2.676509.466907.41960K562HNRNPL
RGPD6ENSG00000183054.77.1265098.65780-3.7912012.689608.60040K562HNRNPUL1
RGPD6ENSG00000183054.782.5474043.546600.922602.170701.31990K562SF3B1
RGPD6ENSG00000183054.725.2933084.21370-1.735302.687001.48300K562SNRNP200
RGPD6ENSG00000183054.717.0627045.78370-1.424002.797701.85790K562SRPK2
RGPD6ENSG00000183054.738.3519091.12560-1.248602.980601.87770K562SRSF4
RGPD6ENSG00000183054.79.9673054.29310-2.445507.626505.14920K562SRSF9
RGPD6ENSG00000183054.7133.1633069.005500.948304.258803.26660K562U2AF2
RGPD6ENSG00000183054.788.5520041.074201.108203.724602.70850K562WDR3
RGPD6ENSG00000183054.7188.7073088.848101.086602.789501.92280K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RGPD6 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RGPD6 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RGPD6 is not avaliable on ENCORE database.