PSMG3

General Information

Gene Name       : PSMG3
Gene ID             : ENSG00000157778.8
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PSMG3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PSMG3ENSG00000157778.87.2623.0515.16ENCSR000AEF
HepG2PSMG3ENSG00000157778.845.9523.5434.75ENCSR985KAT
K562PSMG3ENSG00000157778.846.6636.3341.49ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PSMG3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PSMG3 RNA is bound by 8 proteins.  







eCLIP assay for PSMG3 is not avaliable on ENCORE database.





8 proteins are bound to PSMG3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr716070241607072-3'-UTR,intron-Distal4.794443.74454K562ZC3H11A
chr716071111607205-3'-UTR,intron-Distal,intron-Proximal3.271485.09919K562DDX55
chr716089411609001-5'-UTR,CDS,intron-Distal,intron-Proximal3.879573.23561HepG2U2AF1
chr716089471609008-5'-UTR,CDS,intron-Distal,intron-Proximal4.3579812.13106K562U2AF2
chr716094971609623-5'-UTR,intron-Distal5.3146613.15062HepG2DDX3X
chr716089531609007-5'-UTR,CDS,intron-Distal,intron-Proximal3.209314.30158HepG2U2AF2
chr716092071609237-5'-UTR,intron-Distal3.401114.63311K562AQR
chr716093641609404-5'-UTR,intron-Distal4.404899.03062K562AQR
chr716089551609002-5'-UTR,CDS,intron-Distal,intron-Proximal3.851066.12784K562U2AF1
chr716094341609483-5'-UTR,intron-Distal5.3159615.34985K562AQR
chr716089401609039-5'-UTR,CDS,intron-Distal,intron-Proximal4.9977219.25239K562AQR
chr716093591609405-5'-UTR,intron-Distal3.184887.76940K562BUD13
chr716088961608958-CDS,intron-Distal3.346003.73413HepG2PPIG
chr716087851608852-CDS,intron-Distal4.185968.90357K562DDX3X
chr716089081608953-CDS,intron-Distal3.538955.82148K562DDX3X
chr716088521608903-CDS,intron-Distal5.639769.31660K562DDX3X
chr716087191608749-intron-Distal,intron-Proximal3.475904.41130K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PSMG3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PSMG3 is not available on ENCORE database.

  • 55 RBPs can affect the levels of PSMG3.  








The Knockdown/knockout RNA-Seq assay for PSMG3 is not available on ENCORE database.





55 RBPs can affect the gene expression of PSMG3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PSMG3ENSG00000157778.4304.06990209.056600.540403.553702.88020HepG2ACO1
PSMG3ENSG00000157778.4415.82250291.386700.512902.318801.82730HepG2AKAP1
PSMG3ENSG00000157778.4249.26060340.18450-0.448702.780702.09400HepG2AUH
PSMG3ENSG00000157778.4353.24650239.035900.563302.904201.94150HepG2BCCIP
PSMG3ENSG00000157778.4383.73940246.041000.641105.462304.61470HepG2CELF1
PSMG3ENSG00000157778.4359.39640264.506500.442203.241702.45040HepG2DAZAP1
PSMG3ENSG00000157778.494.71880219.92870-1.215305.220403.51790HepG2DDX27
PSMG3ENSG00000157778.4397.73670279.093900.511002.549601.94760HepG2DDX3X
PSMG3ENSG00000157778.4419.61890239.824000.807005.177304.35680HepG2DDX6
PSMG3ENSG00000157778.4120.78410254.66260-1.076206.652505.65950HepG2EIF4A3
PSMG3ENSG00000157778.4546.74820390.601000.485102.656302.06470HepG2ETF1
PSMG3ENSG00000157778.4327.30350204.262900.680104.516603.45450HepG2EWSR1
PSMG3ENSG00000157778.4357.81950241.535900.566902.977702.25350HepG2HNRNPK
PSMG3ENSG00000157778.4319.49400240.930600.407102.538801.89110HepG2HNRNPL
PSMG3ENSG00000157778.4200.57990142.878500.489302.235201.68490HepG2HNRNPU
PSMG3ENSG00000157778.4234.50990158.886000.561602.346401.30710HepG2LARP7
PSMG3ENSG00000157778.4356.68540258.566500.464001.929401.39770HepG2MATR3
PSMG3ENSG00000157778.4381.14810262.286600.539103.941603.03090HepG2NOL12
PSMG3ENSG00000157778.473.36380133.19800-0.860402.880102.11640HepG2NSUN2
PSMG3ENSG00000157778.4464.97450265.814400.8066010.390709.39570HepG2PUM1
PSMG3ENSG00000157778.4305.04190191.595200.670803.275602.19070HepG2RBM27
PSMG3ENSG00000157778.4302.09460206.698200.547402.981102.42350HepG2NELFE
PSMG3ENSG00000157778.4162.1188097.606700.731902.762402.14790HepG2RPS19
PSMG3ENSG00000157778.4279.19270176.693700.659903.080702.23540HepG2RPS2
PSMG3ENSG00000157778.4276.70050180.374300.617202.698901.63730HepG2RPS5
PSMG3ENSG00000157778.4344.81750196.161400.813703.634602.85830HepG2SF3A3
PSMG3ENSG00000157778.4286.20270193.374000.565503.123602.50050HepG2SF3B4
PSMG3ENSG00000157778.4241.36430148.364000.702004.505003.71940HepG2SMN1
PSMG3ENSG00000157778.4314.23900201.835900.638603.968503.42760HepG2SRSF1
PSMG3ENSG00000157778.4349.96340247.241200.501203.533202.84140HepG2SRSF5
PSMG3ENSG00000157778.4519.99360281.165400.8870012.3631011.21000HepG2SUCLG1
PSMG3ENSG00000157778.4333.69540244.644700.447702.425101.61100HepG2TUFM
PSMG3ENSG00000157778.4256.55230138.230600.892105.931504.80950HepG2UCHL5
PSMG3ENSG00000157778.4290.02460167.956800.788005.631504.82620HepG2UTP3
PSMG3ENSG00000157778.4315.56820230.317100.454202.174701.52580HepG2XRN2
PSMG3ENSG00000157778.41021.81380663.804200.622203.817103.06920K562DDX47
PSMG3ENSG00000157778.4514.38620392.294400.390802.741101.44330K562DDX6
PSMG3ENSG00000157778.4519.23750274.891000.9174010.026708.50550K562EIF3G
PSMG3ENSG00000157778.4157.66910243.00700-0.624103.182201.73450K562FUS
PSMG3ENSG00000157778.4680.84940420.388000.695508.396007.41280K562FXR1
PSMG3ENSG00000157778.483.57190220.91830-1.402408.763907.35710K562G3BP2
PSMG3ENSG00000157778.41569.440201251.292200.326702.807702.04710K562GRSF1
PSMG3ENSG00000157778.4285.14550447.60070-0.650504.645503.89110K562HNRNPC
PSMG3ENSG00000157778.4628.56490393.560200.675405.143003.82860K562HNRNPM
PSMG3ENSG00000157778.4510.31360356.031400.519302.813601.77840K562IGF2BP2
PSMG3ENSG00000157778.4504.00840374.033000.430202.903402.04200K562MAGOH
PSMG3ENSG00000157778.4451.38120332.770800.439702.518701.58660K562PCBP2
PSMG3ENSG00000157778.4386.36580545.23920-0.496902.893402.04210K562PCBP3
PSMG3ENSG00000157778.4719.60210543.175600.405702.790001.96470K562PPIG
PSMG3ENSG00000157778.4596.47980363.407100.714807.665506.59650K562PTBP1
PSMG3ENSG00000157778.41641.012601234.897600.410104.311502.95660K562PUM1
PSMG3ENSG00000157778.4459.00200348.386400.397702.273901.51670K562RBM22
PSMG3ENSG00000157778.496.16160216.85740-1.173205.325603.02930K562TAF15
PSMG3ENSG00000157778.4553.90820360.540200.619404.824903.87850K562TARDBP
PSMG3ENSG00000157778.4475.78920347.790800.452002.950702.10220K562TIA1
PSMG3ENSG00000157778.4149.12930221.16190-0.568502.765001.96140K562U2AF2
PSMG3ENSG00000157778.4900.692801171.27170-0.379002.640401.38420K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PSMG3 is not available on ENCORE database.





2 RBPs can affect the splicing of PSMG3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RIPSMG3ENSG00000157778.4chr7-160875916096291608759160899616094811609629-0.312000.000040.00072excludedK562AGGF1
RIPSMG3ENSG00000157778.4chr7-160875916096291608759160899616094811609629-0.291000.000360.00459excludedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PSMG3 is not avaliable on ENCORE database.