PKNOX1

General Information

Gene Name : PKNOX1
Gene ID : ENSG00000160199.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PKNOX1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PKNOX1	ENSG00000160199.14	6.62	10.92	8.77	ENCSR000AEF
HepG2	PKNOX1	ENSG00000160199.14	9.50	7.39	8.45	ENCSR985KAT
K562	PKNOX1	ENSG00000160199.14	7.53	10.75	9.14	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PKNOX1 is not avaliable on ENCORE database.

Proteins bound to RNA

PKNOX1 RNA is bound by 27 proteins.

eCLIP assay for PKNOX1 is not avaliable on ENCORE database.

27 proteins are bound to PKNOX1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr21	44450593	44450658	+	3'-UTR	4.09021	3.69113	K562	LIN28B
chr21	44450398	44450455	+	3'-UTR	4.69640	11.34016	K562	TARDBP
chr21	44450455	44450505	+	3'-UTR	5.12956	7.52645	K562	TARDBP
chr21	44395039	44395105	+	intron-Distal	5.74331	13.00084	K562	CSTF2T
chr21	44395299	44395340	+	intron-Distal	5.14134	6.10563	K562	AKAP8L
chr21	44395299	44395365	+	intron-Distal	5.51510	4.63331	HepG2	XRN2
chr21	44395218	44395290	+	intron-Distal	5.33612	25.93372	HepG2	CSTF2T
chr21	44395528	44395569	+	intron-Distal	3.46921	3.30761	K562	DDX52
chr21	44394959	44395033	+	intron-Distal	3.25477	6.10862	K562	AKAP8L
chr21	44395795	44395839	+	intron-Distal	4.35967	4.48497	K562	NONO
chr21	44401413	44401457	+	intron-Distal	4.28813	4.64592	HepG2	HNRNPM
chr21	44395228	44395297	+	intron-Distal	4.64745	11.83117	K562	GEMIN5
chr21	44395048	44395105	+	intron-Distal	3.64701	7.88451	HepG2	NKRF
chr21	44395401	44395468	+	intron-Distal	4.41313	8.18170	K562	NONO
chr21	44395229	44395290	+	intron-Distal	5.39932	10.25168	K562	CSTF2T
chr21	44394849	44394898	+	intron-Distal,intron-Proximal	4.60593	9.06344	HepG2	CSTF2T
chr21	44395401	44395466	+	intron-Distal	3.96513	14.68742	HepG2	FAM120A
chr21	44395473	44395576	+	intron-Distal	3.47641	13.82151	K562	CSTF2T
chr21	44395527	44395567	+	intron-Distal	4.87651	6.38928	HepG2	NKRF
chr21	44395393	44395463	+	intron-Distal	3.91776	5.46586	HepG2	FASTKD2
chr21	44395053	44395099	+	intron-Distal	4.99141	6.43928	K562	GTF2F1
chr21	44394950	44395034	+	intron-Distal	3.28042	8.06264	HepG2	PRPF4
chr21	44395227	44395288	+	intron-Distal	3.39863	3.87380	K562	AKAP8L
chr21	44395373	44395471	+	intron-Distal	5.70715	15.29646	HepG2	PRPF4
chr21	44395035	44395086	+	intron-Distal	5.11694	4.38162	K562	DDX52
chr21	44395263	44395370	+	intron-Distal	3.96160	5.12778	HepG2	PCBP2
chr21	44395229	44395349	+	intron-Distal	4.12085	5.86179	K562	XRN2
chr21	44395504	44395556	+	intron-Distal	3.65228	3.30139	K562	DHX30
chr21	44395290	44395382	+	intron-Distal	4.33193	20.85817	HepG2	CSTF2T
chr21	44395048	44395104	+	intron-Distal	4.00666	6.93029	HepG2	GTF2F1
chr21	44395047	44395109	+	intron-Distal	5.13604	5.84761	K562	FAM120A
chr21	44395477	44395537	+	intron-Distal	3.03845	4.40677	K562	HNRNPM
chr21	44394973	44395035	+	intron-Distal	4.28077	3.30336	K562	EWSR1
chr21	44395531	44395622	+	intron-Distal	4.17672	4.25489	HepG2	NCBP2
chr21	44394959	44395068	+	intron-Distal	3.76048	8.28542	K562	FASTKD2
chr21	44395497	44395521	+	intron-Distal	3.45626	3.41711	K562	DROSHA
chr21	44394954	44395029	+	intron-Distal	3.71567	15.60008	HepG2	FAM120A
chr21	44395397	44395468	+	intron-Distal	3.04585	5.49201	K562	EWSR1
chr21	44395391	44395444	+	intron-Distal	4.44476	5.20530	K562	DHX30
chr21	44395297	44395353	+	intron-Distal	3.05255	4.07903	K562	EWSR1
chr21	44395498	44395654	+	intron-Distal	4.14836	14.58961	K562	EWSR1
chr21	44394971	44395011	+	intron-Distal	3.96938	5.39661	K562	GEMIN5
chr21	44395304	44395343	+	intron-Distal	3.25741	3.92966	HepG2	GTF2F1
chr21	44395292	44395365	+	intron-Distal	3.73193	17.02043	HepG2	FAM120A
chr21	44395398	44395457	+	intron-Distal	4.71613	4.53722	K562	SLTM
chr21	44395386	44395478	+	intron-Distal	5.05387	26.16330	HepG2	CSTF2T
chr21	44395698	44395757	+	intron-Distal	3.47245	5.17701	K562	NONO
chr21	44395401	44395460	+	intron-Distal	3.52569	3.12825	K562	EIF4G2
chr21	44394955	44395028	+	intron-Distal	4.15305	3.87091	K562	IGF2BP2
chr21	44395034	44395096	+	intron-Distal	3.23296	6.27493	HepG2	PRPF4
chr21	44395396	44395473	+	intron-Distal	3.74331	10.46768	K562	CSTF2T
chr21	44395042	44395110	+	intron-Distal	4.90356	20.66477	HepG2	FAM120A
chr21	44395751	44395846	+	intron-Distal	3.73557	3.15856	K562	FUS
chr21	44395278	44395373	+	intron-Distal	3.79852	9.80768	HepG2	PRPF4
chr21	44394971	44395019	+	intron-Distal	4.15155	3.90626	K562	XRN2
chr21	44394960	44395030	+	intron-Distal	3.45351	5.10926	HepG2	GTF2F1
chr21	44395241	44395304	+	intron-Distal	3.96293	6.93029	HepG2	GTF2F1
chr21	44395251	44395388	+	intron-Distal	4.08447	6.87941	HepG2	FASTKD2
chr21	44395048	44395107	+	intron-Distal	4.13844	8.90822	K562	TIA1
chr21	44394993	44395029	+	intron-Distal	4.37613	3.07008	K562	NONO
chr21	44395509	44395632	+	intron-Distal	3.16468	6.16771	K562	FUS
chr21	44394968	44395036	+	intron-Distal	4.24843	13.67344	K562	CSTF2T
chr21	44395568	44395646	+	intron-Distal	5.82169	14.70162	K562	NONO
chr21	44395057	44395092	+	intron-Distal	3.43234	3.12686	HepG2	SFPQ
chr21	44395344	44395365	+	intron-Distal	4.59890	4.42836	K562	AKAP8L
chr21	44395484	44395527	+	intron-Distal	3.94044	7.03156	HepG2	NKRF
chr21	44395300	44395369	+	intron-Distal	4.11056	6.60399	K562	CSTF2T
chr21	44395244	44395292	+	intron-Distal	4.76013	4.95161	K562	GTF2F1
chr21	44395760	44395873	+	intron-Distal	3.12838	3.93303	HepG2	HNRNPM
chr21	44395233	44395310	+	intron-Distal	4.79964	13.69405	K562	TIA1
chr21	44395394	44395470	+	intron-Distal	4.41747	12.27741	HepG2	NKRF
chr21	44395285	44395350	+	intron-Distal	4.04167	3.29197	K562	HNRNPM
chr21	44395308	44395370	+	intron-Distal	3.43616	6.66494	HepG2	NKRF
chr21	44395224	44395290	+	intron-Distal	3.20368	7.04321	HepG2	NKRF
chr21	44395073	44395108	+	intron-Distal	5.82144	7.24173	K562	DDX51
chr21	44395216	44395278	+	intron-Distal	3.84897	7.22938	HepG2	PRPF4
chr21	44395485	44395596	+	intron-Distal	3.62238	5.75623	K562	FAM120A
chr21	44394972	44395034	+	intron-Distal	4.72657	9.81110	K562	GTF2F1
chr21	44395392	44395461	+	intron-Distal	3.18580	4.39499	K562	FAM120A
chr21	44395401	44395472	+	intron-Distal	4.44017	9.51301	K562	GTF2F1
chr21	44395392	44395459	+	intron-Distal	3.62068	5.61110	HepG2	GTF2F1
chr21	44409540	44409595	+	intron-Distal	3.76196	3.00349	HepG2	ILF3
chr21	44395576	44395657	+	intron-Distal	3.14096	8.43320	K562	CSTF2T
chr21	44394940	44395027	+	intron-Distal	4.98830	23.90809	HepG2	CSTF2T
chr21	44395046	44395094	+	intron-Distal	4.83712	4.72743	K562	NONO
chr21	44394866	44394910	+	intron-Distal,intron-Proximal	4.18262	3.19904	K562	TIA1
chr21	44395057	44395096	+	intron-Distal	3.47327	3.34952	HepG2	FASTKD2
chr21	44395523	44395607	+	intron-Distal	4.77929	9.30914	HepG2	SFPQ
chr21	44395035	44395106	+	intron-Distal	5.26147	8.72707	K562	EWSR1
chr21	44395488	44395568	+	intron-Distal	5.71471	11.26850	K562	NONO
chr21	44395403	44395447	+	intron-Distal	4.82165	7.42659	K562	GEMIN5
chr21	44395215	44395291	+	intron-Distal	4.69278	26.35229	HepG2	FAM120A
chr21	44394839	44394885	+	intron-Distal,intron-Proximal	5.61812	12.61220	HepG2	FAM120A
chr21	44395478	44395564	+	intron-Distal	4.65630	22.40382	HepG2	CSTF2T
chr21	44395042	44395110	+	intron-Distal	5.08460	21.83175	HepG2	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for PKNOX1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PKNOX1 is not available on ENCORE database.
25 RBPs can affect the levels of PKNOX1.

The Knockdown/knockout RNA-Seq assay for PKNOX1 is not available on ENCORE database.

25 RBPs can affect the gene expression of PKNOX1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PKNOX1	ENSG00000160199.10	504.98630	347.37560	0.53960	4.72920	3.98180	HepG2	ETF1
PKNOX1	ENSG00000160199.10	229.75970	304.49110	-0.40630	2.28650	1.66530	HepG2	HNRNPL
PKNOX1	ENSG00000160199.10	168.19570	239.78280	-0.51160	2.02050	1.32400	HepG2	MSI2
PKNOX1	ENSG00000160199.10	317.56370	219.99350	0.52950	3.33140	2.48970	HepG2	PRPF4
PKNOX1	ENSG00000160199.10	237.32820	316.38400	-0.41480	1.99720	1.47970	HepG2	PUF60
PKNOX1	ENSG00000160199.10	294.92630	227.85480	0.37210	1.93600	1.40150	HepG2	PUS1
PKNOX1	ENSG00000160199.10	214.65680	309.37720	-0.52730	2.85770	1.98750	HepG2	RBM15
PKNOX1	ENSG00000160199.10	444.17310	290.34260	0.61330	4.90430	4.26390	HepG2	RBM22
PKNOX1	ENSG00000160199.10	434.92970	282.75490	0.62110	4.48440	3.64260	HepG2	RBM25
PKNOX1	ENSG00000160199.10	344.74580	215.77970	0.67590	3.17400	2.16490	HepG2	RPS10
PKNOX1	ENSG00000160199.10	138.21450	204.79080	-0.56720	2.74370	2.10100	HepG2	SAFB2
PKNOX1	ENSG00000160199.10	622.34180	327.93290	0.92420	13.69410	12.80520	HepG2	SRFBP1
PKNOX1	ENSG00000160199.10	352.36760	230.97810	0.60920	2.77320	1.77080	HepG2	SRSF3
PKNOX1	ENSG00000160199.10	457.53380	284.72620	0.68420	4.70030	4.06750	HepG2	SSB
PKNOX1	ENSG00000160199.10	136.86130	225.45340	-0.72010	4.38390	3.70650	HepG2	TRIM56
PKNOX1	ENSG00000160199.10	381.12790	253.42080	0.58860	3.16270	2.49420	HepG2	U2AF1
PKNOX1	ENSG00000160199.10	359.48800	217.11490	0.72740	6.35650	5.40750	HepG2	ZC3H8
PKNOX1	ENSG00000160199.10	491.25540	353.83360	0.47330	2.78490	1.92810	K562	FMR1
PKNOX1	ENSG00000160199.10	407.76900	299.91610	0.44310	2.24810	1.42910	K562	FTO
PKNOX1	ENSG00000160199.10	165.26710	249.10950	-0.59200	3.19610	1.74360	K562	FUS
PKNOX1	ENSG00000160199.10	433.81310	272.91130	0.66850	4.08520	3.37550	K562	HNRNPC
PKNOX1	ENSG00000160199.10	631.47860	419.58420	0.58970	4.07450	3.06390	K562	PCBP3
PKNOX1	ENSG00000160199.10	446.63410	321.83920	0.47270	3.12130	2.26720	K562	POLR2G
PKNOX1	ENSG00000160199.10	333.19330	223.31940	0.57720	2.64310	1.67550	K562	RCC2
PKNOX1	ENSG00000160199.10	424.34400	283.26210	0.58300	3.25250	2.38330	K562	U2AF2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PKNOX1 is not available on ENCORE database.

1 RBPs can affect the splicing of PKNOX1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
A3SS	PKNOX1	ENSG00000160199.10	chr21	+	44433156	44433348			44433177	44433348	44430162	44430334	0.34500	0.00000	0.00000	longer	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PKNOX1

General Information

Functions

Localization

Domains (AlphaFold: PKNOX1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PKNOX1 is not avaliable on ENCORE database.

27 proteins are bound to PKNOX1 RNA:

eCLIP assay for PKNOX1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PKNOX1 is not available on ENCORE database.

25 RBPs can affect the gene expression of PKNOX1 :

The Knockdown/knockout RNA-Seq assay for PKNOX1 is not available on ENCORE database.

1 RBPs can affect the splicing of PKNOX1 :

The Knockdown/knockout RNA-Seq assay for PKNOX1 is not avaliable on ENCORE database.