NDUFAF6

General Information

Gene Name       : NDUFAF6
Gene ID             : ENSG00000156170.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NDUFAF6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDUFAF6ENSG00000156170.1216.0820.3318.20ENCSR000AEF
HepG2NDUFAF6ENSG00000156170.1213.5622.2317.89ENCSR985KAT
K562NDUFAF6ENSG00000156170.1218.5816.6417.61ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDUFAF6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDUFAF6 RNA is bound by 18 proteins.  







eCLIP assay for NDUFAF6 is not avaliable on ENCORE database.





18 proteins are bound to NDUFAF6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr89606068596060763+3'-UTR,5'-UTR,CDS4.111843.45943HepG2BCLAF1
chr89604416896044237+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.749154.90235K562SF3B4
chr89605378796053876+3'-UTR,5'-UTR,CDS,intron-Proximal4.601915.02679K562BUD13
chr89603741396037605+5'-UTR,CDS,intron-Distal,intron-Proximal5.119596.45599K562PRPF8
chr89603731396037422+5'-UTR,CDS,intron-Distal5.1155711.38399K562DDX3X
chr89603723496037326+5'-UTR,CDS,intron-Distal3.957544.17587HepG2DDX3X
chr89603735996037409+5'-UTR,CDS,intron-Distal4.473754.66990HepG2DDX3X
chr89603738996037525+5'-UTR,CDS,intron-Distal,intron-Proximal3.882156.18341HepG2PRPF8
chr89606188196061924+intron-Distal3.726063.06015K562MATR3
chr89596177995961925+intron-Distal4.671756.14390HepG2NCBP2
chr89600057196000624+intron-Distal,intron-Proximal4.011093.66257HepG2U2AF1
chr89596181195961955+intron-Distal4.500089.49794HepG2PRPF4
chr89590905795909152+intron-Distal4.339984.84226K562NONO
chr89596184495961966+intron-Distal4.897685.14122HepG2PCBP2
chr89606182096061855+intron-Distal3.731935.21542K562LSM11
chr89600056896000625+intron-Distal,intron-Proximal4.1015711.25083HepG2U2AF2
chr89606125296061353+intron-Distal4.558034.28663HepG2SUGP2
chr89606146396061575+intron-Distal3.504254.26619K562MATR3
chr89605908096059210+intron-Distal,intron-Proximal3.067873.46531K562KHSRP
chr89590878195908922+intron-Distal4.725376.40665K562NONO
chr89590898895909057+intron-Distal3.723703.07008K562NONO
chr89590876395908865+intron-Distal4.480665.60609HepG2CSTF2T
chr89596183995961922+intron-Distal5.109327.28703HepG2GTF2F1
chr89606178196061820+intron-Distal3.525343.98823K562LSM11
chr89606149396061538+intron-Distal3.504283.76275K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDUFAF6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDUFAF6 is not available on ENCORE database.

  • 34 RBPs can affect the levels of NDUFAF6.  








The Knockdown/knockout RNA-Seq assay for NDUFAF6 is not available on ENCORE database.





34 RBPs can affect the gene expression of NDUFAF6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDUFAF6ENSG00000156170.8242.74770167.704400.533401.883301.43480HepG2AKAP1
NDUFAF6ENSG00000156170.8272.57670160.663000.762503.895603.16450HepG2DDX3X
NDUFAF6ENSG00000156170.8277.23480146.639500.918702.986302.32170HepG2EIF4A3
NDUFAF6ENSG00000156170.8238.40400142.742200.739902.908002.20340HepG2EIF4B
NDUFAF6ENSG00000156170.8387.75530287.445300.431802.538401.72980HepG2EIF4G1
NDUFAF6ENSG00000156170.8408.40110322.063100.342502.248101.69680HepG2ETF1
NDUFAF6ENSG00000156170.8215.23130147.902500.541102.043401.44540HepG2FXR1
NDUFAF6ENSG00000156170.8161.44990223.06320-0.466401.995201.37940HepG2HNRNPF
NDUFAF6ENSG00000156170.8310.88110147.953901.071107.510606.44530HepG2MAGOH
NDUFAF6ENSG00000156170.8287.14000148.790200.948405.358504.50540HepG2MATR3
NDUFAF6ENSG00000156170.892.44290176.43660-0.932503.512102.50390HepG2PABPC1
NDUFAF6ENSG00000156170.8223.98780159.164900.492802.295001.51760HepG2PARN
NDUFAF6ENSG00000156170.8327.57080151.201301.115205.726204.73520HepG2RAVER1
NDUFAF6ENSG00000156170.8394.85650269.186000.552603.807303.22460HepG2RBM22
NDUFAF6ENSG00000156170.8143.1981093.648600.612601.996501.46610HepG2RPS19
NDUFAF6ENSG00000156170.8189.00420123.512500.613702.014901.33410HepG2RRP9
NDUFAF6ENSG00000156170.8188.74540264.43750-0.486502.689701.99560HepG2SLBP
NDUFAF6ENSG00000156170.8307.66810207.573400.567702.067101.39610HepG2SNRNP70
NDUFAF6ENSG00000156170.8240.30630179.413600.421501.824401.41770HepG2SRSF1
NDUFAF6ENSG00000156170.8326.35070200.735300.701003.300302.19550HepG2SRSF3
NDUFAF6ENSG00000156170.8217.69520161.280100.432601.818401.34550HepG2TAF15
NDUFAF6ENSG00000156170.8233.89550156.253800.581902.915302.40460HepG2TIAL1
NDUFAF6ENSG00000156170.8213.0091095.184801.162007.340306.09730HepG2UCHL5
NDUFAF6ENSG00000156170.8365.02850277.346600.396201.922001.37340K562AKAP8L
NDUFAF6ENSG00000156170.8302.83310477.62590-0.657404.453703.74190K562AQR
NDUFAF6ENSG00000156170.8578.53970413.663100.483904.476303.67460K562DDX47
NDUFAF6ENSG00000156170.8757.37910560.740600.433604.228503.07540K562EIF4G2
NDUFAF6ENSG00000156170.8352.55720250.088500.495302.522901.70680K562FMR1
NDUFAF6ENSG00000156170.8305.70620202.381100.595003.681702.99900K562FXR1
NDUFAF6ENSG00000156170.8167.85070234.75100-0.484001.883701.37940K562HNRNPC
NDUFAF6ENSG00000156170.8218.80040305.82400-0.483102.759901.86660K562HNRNPU
NDUFAF6ENSG00000156170.8384.94030265.125500.537902.334601.71770K562PTBP1
NDUFAF6ENSG00000156170.8902.20730650.718100.471304.531203.13970K562PUM1
NDUFAF6ENSG00000156170.8438.13100275.071000.671504.557203.88390K562PUS1
NDUFAF6ENSG00000156170.8242.42250325.59210-0.425502.433001.75830K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDUFAF6 is not available on ENCORE database.





11 RBPs can affect the splicing of NDUFAF6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENDUFAF6ENSG00000156170.8chr8+9604859896048722960476819604780496053797960538540.220000.000040.00641includedHepG2G3BP1
SENDUFAF6ENSG00000156170.8chr8+9604859896048722960476819604780496053797960538540.281000.000000.00001includedHepG2HNRNPK
SENDUFAF6ENSG00000156170.8chr8+960592219605935596057690960578759606068496060786-0.081000.000180.00287excludedK562AQR
SENDUFAF6ENSG00000156170.8chr8+9604859896048722960476819604780496053797960538540.170000.000070.09744includedK562EWSR1
SENDUFAF6ENSG00000156170.8chr8+9598754595987643959702229597040795988044959882110.523000.002290.07781includedHepG2MATR3
SENDUFAF6ENSG00000156170.8chr8+960567049605682396053797960538549605777296057875-0.086000.004170.07083excludedK562U2AF1
SENDUFAF6ENSG00000156170.8chr8+960462359604635096044222960443269604768196047804-0.422000.001230.02652excludedK562U2AF1
SENDUFAF6ENSG00000156170.8chr8+9604852996048722960476819604780496053797960538540.197000.000200.01881includedHepG2HNRNPL
SENDUFAF6ENSG00000156170.8chr8+9604623596046350960442229604432696047681960478040.407000.000400.03282includedHepG2HNRNPL
SENDUFAF6ENSG00000156170.8chr8+9604623596046350960442229604432696047681960478040.260000.000330.02744includedK562HNRNPL
SENDUFAF6ENSG00000156170.8chr8+960462359604635096044222960443269604768196047804-0.471000.000310.00746excludedK562U2AF2
SENDUFAF6ENSG00000156170.8chr8+960592219605935596057772960578759606068496060786-0.102000.002150.06695excludedK562TARDBP
SENDUFAF6ENSG00000156170.8chr8+9604852996048722960476819604780496053797960538540.233000.000010.00076includedK562HNRNPU
SENDUFAF6ENSG00000156170.8chr8+9604859896048722960476819604780496053797960538540.372000.000050.00368includedHepG2HNRNPU
SENDUFAF6ENSG00000156170.8chr8+9605670496056823960537979605385496057772960578750.296000.002160.07025includedHepG2HNRNPC
SENDUFAF6ENSG00000156170.8chr8+9605670496056823960537979605385496057772960578750.663000.000000.00000includedK562HNRNPC
SENDUFAF6ENSG00000156170.8chr8+960592219605935596057772960578759606068496060786-0.210000.000000.00012excludedK562HNRNPC
A3SSNDUFAF6ENSG00000156170.8chr8+9605918696059315960592219605931596057772960578750.070000.000150.00127longerK562AQR
A3SSNDUFAF6ENSG00000156170.8chr8+9605774596057875960577729605787596053709960538540.161000.000000.00002longerK562AQR
A5SSNDUFAF6ENSG00000156170.8chr8+9604422296044326960442229604432296047681960478040.436000.000270.07785longerHepG2G3BP1
A5SSNDUFAF6ENSG00000156170.8chr8+9604422296044326960442229604432296047681960478040.512000.000000.00027longerK562HNRNPL

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDUFAF6 is not avaliable on ENCORE database.