KRBOX4

General Information

Gene Name       : KRBOX4
Gene ID             : ENSG00000147121.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KRBOX4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KRBOX4ENSG00000147121.157.527.177.34ENCSR000AEF
HepG2KRBOX4ENSG00000147121.156.418.977.69ENCSR985KAT
K562KRBOX4ENSG00000147121.155.155.675.41ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KRBOX4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • KRBOX4 RNA is bound by 5 proteins.  







eCLIP assay for KRBOX4 is not avaliable on ENCORE database.





5 proteins are bound to KRBOX4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX4633341546333471+3'-UTR,intron-Distal4.851515.45041K562PUM2
chrX4632266046322750+CDS,intron-Proximal4.422594.37348HepG2BCLAF1
chrX4632263346322753+CDS,intron-Proximal5.652447.95724HepG2PPIG
chrX4632264846322754+CDS,intron-Proximal4.054084.04622HepG2GRWD1
chrX4632708846327315+intron-Distal4.557524.79477K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KRBOX4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KRBOX4 is not available on ENCORE database.

  • 45 RBPs can affect the levels of KRBOX4.  








The Knockdown/knockout RNA-Seq assay for KRBOX4 is not available on ENCORE database.





45 RBPs can affect the gene expression of KRBOX4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KRBOX4ENSG00000147121.11224.77610436.23390-0.956604.928104.24540HepG2AKAP1
KRBOX4ENSG00000147121.11397.09400302.899100.390502.401401.75330HepG2AUH
KRBOX4ENSG00000147121.11290.20440197.911500.552102.786602.18640HepG2BOP1
KRBOX4ENSG00000147121.11186.78930342.93900-0.876503.980303.06240HepG2CIRBP
KRBOX4ENSG00000147121.11296.84110417.92900-0.493601.931301.39960HepG2DDX3X
KRBOX4ENSG00000147121.11217.52070358.89200-0.722403.496002.80870HepG2DDX6
KRBOX4ENSG00000147121.11214.14900345.12840-0.688502.917302.30860HepG2EIF2S1
KRBOX4ENSG00000147121.11238.61520371.30080-0.637902.794302.10230HepG2EIF4B
KRBOX4ENSG00000147121.11435.37000347.771600.324001.930401.40890HepG2ETF1
KRBOX4ENSG00000147121.11207.51980384.71020-0.890504.694303.80880HepG2FXR1
KRBOX4ENSG00000147121.11248.82090356.96500-0.520702.071401.49210HepG2G3BP1
KRBOX4ENSG00000147121.11252.26040361.24950-0.518102.356701.70980HepG2HNRNPK
KRBOX4ENSG00000147121.11229.80760387.02540-0.752003.696002.97740HepG2MATR3
KRBOX4ENSG00000147121.11270.80450396.16470-0.548802.122601.56460HepG2NCBP2
KRBOX4ENSG00000147121.11247.60230335.52660-0.438402.317601.62000HepG2NOL12
KRBOX4ENSG00000147121.11214.14090360.22390-0.750306.583605.70850HepG2PCBP1
KRBOX4ENSG00000147121.11236.24650169.727800.477002.391401.66630HepG2PRPF4
KRBOX4ENSG00000147121.11220.97260366.52890-0.730105.934005.19380HepG2PTBP1
KRBOX4ENSG00000147121.11260.21100340.02590-0.386002.142001.60670HepG2PUM1
KRBOX4ENSG00000147121.11134.25290339.76960-1.3396013.3549011.94860HepG2PUM2
KRBOX4ENSG00000147121.11290.54220396.98630-0.450302.721402.10150HepG2QKI
KRBOX4ENSG00000147121.11418.73270290.672100.526503.709603.13260HepG2RBM22
KRBOX4ENSG00000147121.11241.65890360.28060-0.576103.628302.86300HepG2RBM25
KRBOX4ENSG00000147121.11220.95450407.92180-0.884508.527307.67380HepG2NELFE
KRBOX4ENSG00000147121.11239.95060379.90500-0.662905.262904.44680HepG2RECQL
KRBOX4ENSG00000147121.11305.87710218.209700.487102.393501.75050HepG2RPLP0
KRBOX4ENSG00000147121.11250.66440381.62610-0.606404.608303.87470HepG2SF3B4
KRBOX4ENSG00000147121.11423.50240328.302300.367202.339201.86590HepG2SRFBP1
KRBOX4ENSG00000147121.11250.51190324.05160-0.371302.072901.58090HepG2SRSF9
KRBOX4ENSG00000147121.11434.18560285.042300.607005.460404.78760HepG2SSB
KRBOX4ENSG00000147121.11262.78370182.427800.526502.153401.54720HepG2SUPV3L1
KRBOX4ENSG00000147121.11235.61060328.98520-0.481602.755001.92030HepG2TIA1
KRBOX4ENSG00000147121.11135.58690188.55770-0.475802.067201.56650HepG2TRIM56
KRBOX4ENSG00000147121.11221.26960312.94090-0.500102.440001.62270HepG2TUFM
KRBOX4ENSG00000147121.11279.20050205.659700.440901.826601.30560HepG2U2AF1
KRBOX4ENSG00000147121.11266.14210167.093300.671402.952401.91460HepG2UPF2
KRBOX4ENSG00000147121.11171.25390249.49120-0.542902.681002.11970K562AGGF1
KRBOX4ENSG00000147121.11171.95300259.60580-0.594302.924602.25250K562AKAP8L
KRBOX4ENSG00000147121.11200.02550272.38700-0.445502.188901.38370K562ATP5C1
KRBOX4ENSG00000147121.11355.11650261.695100.440302.660401.73700K562EIF4G2
KRBOX4ENSG00000147121.11193.29910132.798900.541502.029701.50780K562HNRNPC
KRBOX4ENSG00000147121.11173.32850250.85490-0.533302.555401.98240K562RBM15
KRBOX4ENSG00000147121.11226.39070150.986100.584302.681701.98430K562SRSF1
KRBOX4ENSG00000147121.11219.48290140.492400.643503.345802.46510K562U2AF2
KRBOX4ENSG00000147121.11236.61970165.440800.516202.480301.79860K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KRBOX4 is not available on ENCORE database.





5 RBPs can affect the splicing of KRBOX4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEKRBOX4ENSG00000147121.11chrX+4633057646330620463226324632274346332184463340730.613000.001440.02798includedHepG2U2AF1
SEKRBOX4ENSG00000147121.11chrX+4633057646330620463226324632274346332184463340730.854000.000240.03679includedHepG2HNRNPM
SEKRBOX4ENSG00000147121.11chrX+4633057646330620463226324632274346332184463340730.508000.000100.01076includedHepG2NCBP2
SEKRBOX4ENSG00000147121.11chrX+4633057646330620463226324632274346332184463340730.685000.000000.00000includedHepG2MATR3
SEKRBOX4ENSG00000147121.11chrX+4633057646330620463226324632274346332184463340730.471000.000300.00958includedHepG2SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KRBOX4 is not avaliable on ENCORE database.