HPS4

General Information

Gene Name : HPS4
Gene ID : ENSG00000100099.20
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: HPS4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	HPS4	ENSG00000100099.20	17.24	21.18	19.21	ENCSR000AEF
HepG2	HPS4	ENSG00000100099.20	18.96	21.90	20.43	ENCSR985KAT
K562	HPS4	ENSG00000100099.20	20.52	19.66	20.09	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for HPS4 is not avaliable on ENCORE database.

Proteins bound to RNA

HPS4 RNA is bound by 16 proteins.

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eCLIP assay for HPS4 is not avaliable on ENCORE database.

16 proteins are bound to HPS4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	26868857	26868929	-	CDS,intron-Distal,intron-Proximal	4.15548	18.48497	K562	AQR
chr22	26872910	26872970	-	CDS,intron-Distal,intron-Proximal	4.16795	10.08968	K562	AQR
chr22	26862170	26862238	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.39316	10.07103	K562	U2AF1
chr22	26862236	26862278	-	intron-Distal,intron-Proximal	4.83449	9.24007	HepG2	SF3A3
chr22	26864498	26864576	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.95170	8.98325	HepG2	PPIG
chr22	26861660	26861775	-	5'-UTR,intron-Distal	3.12830	8.53603	HepG2	U2AF2
chr22	26872838	26872910	-	intron-Distal,intron-Proximal	4.40715	8.29266	K562	AQR
chr22	26866766	26866838	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.28469	8.18279	K562	SF3B4
chr22	26864527	26864624	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.44556	8.01338	K562	AQR
chr22	26854368	26854400	-	intron-Distal,intron-Proximal	5.26838	7.81430	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 51 entries

eCLIP assay for HPS4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for HPS4 is not available on ENCORE database.
54 RBPs can affect the levels of HPS4.

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The Knockdown/knockout RNA-Seq assay for HPS4 is not available on ENCORE database.

54 RBPs can affect the gene expression of HPS4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
HPS4	ENSG00000100099.16	1435.73300	1033.48330	0.47420	8.37400	7.40140	HepG2	PUS1
HPS4	ENSG00000100099.16	671.03560	1181.42610	-0.81610	7.94780	7.09780	HepG2	AKAP1
HPS4	ENSG00000100099.16	1375.20950	981.93170	0.48590	7.50440	6.56210	HepG2	RECQL
HPS4	ENSG00000100099.16	646.22420	960.17810	-0.57130	6.91110	5.52380	K562	SF3B4
HPS4	ENSG00000100099.16	1633.07340	1032.72810	0.66100	6.40710	5.43440	HepG2	EIF4A3
HPS4	ENSG00000100099.16	1704.14470	2396.92350	-0.49210	6.00230	4.80440	K562	PUF60
HPS4	ENSG00000100099.16	1402.57430	1025.96300	0.45100	5.46390	4.62950	HepG2	QKI
HPS4	ENSG00000100099.16	1144.55970	1524.24800	-0.41330	5.25810	4.60080	HepG2	RBM22
HPS4	ENSG00000100099.16	722.12760	953.40220	-0.40080	5.03850	4.17770	HepG2	ZC3H8
HPS4	ENSG00000100099.16	600.70680	903.06760	-0.58820	5.13470	4.11250	K562	PRPF8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 58 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for HPS4 is not available on ENCORE database.

17 RBPs can affect the splicing of HPS4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	HPS4	ENSG00000100099.16	chr22	-	26861420	26862228	26861420	26861517	26862191	26862228	0.33000	0.00000	0.00002	included	K562	PUS1
SE	HPS4	ENSG00000100099.16	chr22	-	26878711	26878839	26877823	26878206	26879639	26879802	0.23200	0.00002	0.00246	included	HepG2	NCBP2
SE	HPS4	ENSG00000100099.16	chr22	-	26875230	26875321	26872958	26873102	26877687	26878206	-0.19100	0.00005	0.00319	excluded	K562	HNRNPU
SE	HPS4	ENSG00000100099.16	chr22	-	26867178	26867354	26866553	26866779	26868267	26868384	-0.21000	0.00009	0.04026	excluded	K562	UCHL5
A3SS	HPS4	ENSG00000100099.16	chr22	-	26866684	26866888	26866684	26866779	26868267	26868384	0.15400	0.00012	0.01356	longer	HepG2	SF3A3
SE	HPS4	ENSG00000100099.16	chr22	-	26862016	26862070	26861420	26861517	26862191	26862228	0.43400	0.00025	0.00814	included	HepG2	SRSF1
SE	HPS4	ENSG00000100099.16	chr22	-	26862016	26862070	26861420	26861517	26862191	26862228	0.22000	0.00030	0.01078	included	K562	AGGF1
A3SS	HPS4	ENSG00000100099.16	chr22	-	26866684	26866888	26866684	26866779	26868267	26868384	0.12200	0.00030	0.04054	longer	K562	HNRNPC
RI	HPS4	ENSG00000100099.16	chr22	-	26861420	26862228	26861420	26861517	26862191	26862228	0.31600	0.00042	0.04789	included	K562	HNRNPK
SE	HPS4	ENSG00000100099.16	chr22	-	26875230	26875321	26872958	26873102	26877687	26878206	-0.22400	0.00091	0.01947	excluded	K562	SF3B4

Showing 1 to 10 of 20 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

HPS4

General Information

Functions

Localization

Domains (AlphaFold: HPS4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for HPS4 is not avaliable on ENCORE database.

16 proteins are bound to HPS4 RNA:

eCLIP assay for HPS4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for HPS4 is not available on ENCORE database.

54 RBPs can affect the gene expression of HPS4 :

The Knockdown/knockout RNA-Seq assay for HPS4 is not available on ENCORE database.

17 RBPs can affect the splicing of HPS4 :

The Knockdown/knockout RNA-Seq assay for HPS4 is not avaliable on ENCORE database.