GMDS-AS1

General Information

Gene Name       : GMDS-AS1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GMDS-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GMDS-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GMDS-AS1 RNA is bound by 27 proteins.  







eCLIP assay for GMDS-AS1 is not avaliable on ENCORE database.





27 proteins are bound to GMDS-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr623238812323926+intron-Distal3.265933.42785HepG2HNRNPM
chr622798082279853+intron-Distal4.277113.97018HepG2HNRNPM
chr623767882376904+intron-Distal5.2473516.56363HepG2GTF2F1
chr622720912272157+intron-Distal3.876073.38391HepG2SAFB
chr623767042376732+intron-Distal4.9608529.90802HepG2AGGF1
chr623550102355074+intron-Distal4.516614.20763HepG2U2AF2
chr623440352344156+intron-Distal3.394645.73989HepG2HNRNPL
chr623765972376683+intron-Distal5.9410364.51270HepG2AGGF1
chr623284892328591+intron-Distal5.8441210.98212K562PTBP1
chr623895212389605+intron-Distal5.5361910.48612K562AGGF1
chr623766692376718+intron-Distal6.1249617.82686HepG2XPO5
chr623768472376868+intron-Distal6.3882733.69066HepG2AGGF1
chr623806292380672+intron-Distal4.849064.82195HepG2XPO5
chr623769152376970+intron-Distal7.5819826.72870HepG2AGGF1
chr623615902361628+intron-Distal4.378764.12522HepG2HLTF
chr622730132273084+intron-Distal3.940033.73313HepG2TAF15
chr623773972377502+intron-Distal4.046673.90517HepG2YBX3
chr623763362376396+intron-Distal4.2624125.39908HepG2AGGF1
chr623774342377499+intron-Distal4.9017413.89972HepG2XPO5
chr623769212377014+intron-Distal3.928563.30829HepG2CSTF2
chr622993302299490+intron-Distal3.628508.57376HepG2HLTF
chr623399852340111+intron-Distal3.311894.80573HepG2HLTF
chr622638342263859+intron-Distal,intron-Proximal3.895154.68902HepG2PPIG
chr623762992376353+intron-Distal4.588455.50419HepG2LARP4
chr623777052377769+intron-Distal6.105427.78302HepG2HNRNPL
chr623780972378144+intron-Distal4.119283.10178HepG2CDC40
chr623039702304064+intron-Distal4.574925.60971HepG2HLTF
chr623769292377005+intron-Distal4.826997.03988K562HNRNPL
chr623892862389295+intron-Distal5.8731642.52189HepG2HNRNPL
chr623282322328275+intron-Distal4.763214.66737HepG2MATR3
chr623761432376173+intron-Distal4.695285.11000HepG2CDC40
chr623762682376335+intron-Distal5.5133526.68206K562AGGF1
chr623767182376804+intron-Distal6.5545374.53119HepG2XPO5
chr623740162374122+intron-Distal3.814953.88679HepG2CSTF2
chr623762652376336+intron-Distal5.3130116.07534HepG2AGGF1
chr623894192389485+intron-Distal5.4357235.39997HepG2HNRNPL
chr623894852389515+intron-Distal6.0126817.22234HepG2HNRNPL
chr623610782361167+intron-Distal3.381624.84290HepG2HLTF
chr623217402321827+intron-Distal4.462093.62366HepG2HNRNPM
chr623769162377018+intron-Distal5.189777.88784HepG2LARP4
chr623764262376450+intron-Distal3.976476.85446HepG2XPO5
chr623894622389604+intron-Distal3.733637.43903HepG2XPO5
chr623290952329188+intron-Distal3.147357.81916HepG2SUGP2
chr623892682389332+intron-Distal3.048348.42792HepG2XPO5
chr623241542324196+intron-Distal4.380344.66899HepG2HNRNPM
chr623764892376543+intron-Distal5.7332622.57620HepG2AGGF1
chr623763242376367+intron-Distal4.8140137.35629HepG2HNRNPL
chr622728642272930+intron-Distal4.178564.61904HepG2SRSF9
chr623768192376847+intron-Distal7.8442460.56566HepG2AGGF1
chr623424502342505+intron-Distal4.989047.76065HepG2HLTF
chr623777312377778+intron-Distal4.319317.97087HepG2XPO5
chr623779942378064+intron-Distal5.2810613.81267HepG2XPO5
chr623422702342386+intron-Distal3.539737.48780HepG2HLTF
chr624075632407622+intron-Distal3.668263.30286HepG2PTBP1
chr622731902273273+intron-Distal3.412907.66871HepG2BCLAF1
chr623892952389311+intron-Distal6.3876941.69986HepG2HNRNPL
chr622948212294934+intron-Distal3.586703.58752HepG2ILF3
chr623774192377493+intron-Distal4.764685.31654K562HNRNPL
chr623798812379956+intron-Distal4.223523.30829HepG2CSTF2
chr623766832376704+intron-Distal4.7735128.06017HepG2AGGF1
chr623764092376474+intron-Distal5.7171528.14458HepG2HNRNPL
chr623765532376597+intron-Distal6.2950136.80940HepG2AGGF1
chr623767722376822+intron-Distal7.01004109.83764HepG2HNRNPL
chr624104902410547+intron-Distal3.922023.04224HepG2SUGP2
chr623895042389627+intron-Distal4.6753111.84678HepG2AGGF1
chr623767682376819+intron-Distal8.3588796.48760HepG2AGGF1
chr622583652258462+intron-Distal3.467584.66833HepG2HNRNPL
chr622731612273253+intron-Distal3.380193.48567K562SLTM
chr623774352377482+intron-Distal6.2956718.43658K562AGGF1
chr623895152389588+intron-Distal5.2185823.10357HepG2HNRNPL
chr623285082328610+intron-Distal3.499803.45178K562MATR3
chr622967472296808+intron-Distal3.019933.27276HepG2HNRNPL
chr623766692376771+intron-Distal6.4219385.61785HepG2HNRNPL
chr623768642376921+intron-Distal3.903073.31911HepG2YBX3
chr623896812389801+intron-Distal3.695174.57171HepG2AGGF1
chr623774522377495+intron-Distal4.850576.03658HepG2HNRNPL
chr623047202304803+intron-Distal4.573295.31233HepG2HLTF
chr623230342323108+intron-Distal4.386094.38558HepG2HNRNPM
chr622730252273064+intron-Distal4.706176.20441HepG2HLTF
chr623274162327452+intron-Distal3.265553.84025HepG2SUGP2
chr623765082376549+intron-Distal5.0566024.85736HepG2HNRNPL
chr623293342329392+intron-Distal5.094297.15419HepG2MATR3
chr623893472389450+intron-Distal3.2296311.92724HepG2AGGF1
chr623767322376768+intron-Distal5.7720545.66167HepG2AGGF1
chr623892692389286+intron-Distal5.2529634.04869HepG2HNRNPL
chr623248092324866+intron-Distal3.648704.28420HepG2HNRNPM
chr623765512376610+intron-Distal7.0524721.19606HepG2XPO5
chr623169012317077+intron-Distal5.0292316.31752HepG2PTBP1
chr622638592263893+intron-Distal3.705877.83545HepG2PPIG
chr622999032299988+intron-Distal5.9602611.24011HepG2XPO5
chr624111622411225+intron-Distal3.329813.59523HepG2SUGP2
chr623250772325131+intron-Distal3.568415.06177HepG2SUGP2
chr624069382406988+intron-Distal3.161363.00914HepG2PTBP1
chr623768022376864+intron-Distal4.748635.87145HepG2YBX3
chr622998562299928+intron-Distal3.512523.10834HepG2CSTF2
chr623762992376367+intron-Distal4.619289.65258HepG2CDC40
chr623178532317884+intron-Distal4.471197.97419K562DDX3X
chr623777122377759+intron-Distal5.361436.98111K562AGGF1
chr623891802389345+intron-Distal5.7273024.33437K562AGGF1
chr622638932263923+intron-Distal,intron-Proximal3.530808.74772HepG2PPIG
chr623763962376466+intron-Distal6.1602863.66418HepG2AGGF1
chr622997512299806+intron-Distal3.767575.84561HepG2HLTF
chr623767442376885+intron-Distal8.7484295.19165K562AGGF1
chr622704312270485+intron-Distal3.155353.54222HepG2TAF15
chr623768222376874+intron-Distal6.5025374.57431HepG2HNRNPL
chr623767702376916+intron-Distal4.8236112.97387HepG2LARP4
chr623227392322833+intron-Distal3.531196.91468HepG2HNRNPM
chr622733562273386+intron-Distal3.640555.04128HepG2HLTF
chr623892232389347+intron-Distal3.7167117.79423HepG2AGGF1
chr623892302389248+intron-Distal3.7063010.76286HepG2HNRNPL
chr623280812328134+intron-Distal3.677505.54651HepG2SUGP2
chr623241572324202+intron-Distal4.053543.04224HepG2SUGP2
chr623284872328600+intron-Distal3.7003018.17546HepG2PTBP1
chr623763682376404+intron-Distal5.6246545.18848HepG2HNRNPL
chr622840422284099+intron-Distal4.807765.63000HepG2HLTF
chr623269502327001+intron-Distal3.482534.84410HepG2SUGP2
chr623766852376802+intron-Distal5.213378.64907HepG2YBX3
chr623242052324277+intron-Distal3.081063.05255HepG2SUGP2
chr623586462358704+intron-Distal4.262574.87774HepG2HNRNPK
chr623668462366957+intron-Distal3.211113.03520HepG2HNRNPL
chr623261622326241+intron-Distal3.090526.84019HepG2SUGP2
chr622734712273548+intron-Distal3.971749.73574HepG2HLTF
chr622996802299751+intron-Distal3.079814.54322HepG2HLTF
chr623779942378062+intron-Distal3.899683.80299K562HNRNPL
chr623892482389269+intron-Distal4.5935224.24169HepG2HNRNPL
chr624075142407563+intron-Distal3.161363.00914HepG2PTBP1
chr622998722299952+intron-Distal3.224356.40644HepG2HLTF
chr622627352262792+intron-Distal3.920217.29258HepG2SUGP2
chr623891862389230+intron-Distal3.446498.83280HepG2HNRNPL
chr622638592263921+intron-Distal,intron-Proximal4.1617112.07231HepG2BCLAF1
chr623892182389338+intron-Distal3.938096.46071K562HNRNPL
chr623893352389376+intron-Distal6.3085321.18231HepG2HNRNPL
chr623767562376868+intron-Distal4.8803711.20372K562AKAP8L
chr622866482286699+intron-Distal3.177584.56843HepG2HLTF
chr623767142376788+intron-Distal4.416376.90583HepG2GTF2F1
chr623282332328284+intron-Distal3.161364.00631HepG2PTBP1
chr623768262376921+intron-Distal8.0953591.35325HepG2XPO5
chr623765132376601+intron-Distal3.651333.09919HepG2YBX3
chr623767572376866+intron-Distal4.076884.31428K562YBX3
chr623765562376622+intron-Distal5.5426636.87854HepG2HNRNPL
chr623268372326857+intron-Distal3.728783.16028HepG2SUGP2
chr622968562296938+intron-Distal3.392905.10768HepG2QKI
chr623768042376826+intron-Distal7.5677670.03108HepG2XPO5
chr623228812322936+intron-Distal4.258273.89085K562EXOSC5
chr623768982376915+intron-Distal6.8648920.02541HepG2AGGF1
chr623618442361915+intron-Distal5.150928.07729HepG2HLTF
chr622838932283992+intron-Distal3.425967.02083HepG2HLTF
chr623767682376929+intron-Distal6.2443124.47834K562HNRNPL
chr623780142378062+intron-Distal5.208743.08079HepG2AGGF1
chr623225162322564+intron-Distal3.003774.40773HepG2SUGP2
chr623768682376898+intron-Distal6.2806928.73036HepG2AGGF1
chr623420572342103+intron-Distal4.536295.03859HepG2HLTF
chr623656622365769+intron-Distal3.136603.12105HepG2HNRNPL
chr623767472376875+intron-Distal4.8279617.08539HepG2CDC40
chr624037072403754+intron-Distal3.136053.08145HepG2HLTF
chr622935292293623+intron-Distal3.706175.55255HepG2HLTF
chr623769412377016+intron-Distal5.4118322.31404HepG2XPO5
chr623285052328613+intron-Distal3.566613.91876HepG2U2AF2
chr623242302324312+intron-Distal4.998927.51037HepG2HNRNPM
chr623780052378055+intron-Distal4.269063.50322HepG2CDC40
chr624111482411223+intron-Distal3.995653.27946HepG2HNRNPM
chr624068742407041+intron-Distal3.891915.12973HepG2MATR3
chr623780142378066+intron-Distal4.237004.09021HepG2HNRNPL
chr623285322328612+intron-Distal4.013489.31718HepG2MATR3
chr623779962378045+intron-Distal5.6679211.08192K562AGGF1
chr622490682249170+intron-Proximal3.807303.49192HepG2UCHL5
chr622490702249076+intron-Proximal3.073673.05161HepG2PPIG
chr622490762249170+intron-Proximal3.6268514.45990HepG2PPIG
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GMDS-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GMDS-AS1 is not available on ENCORE database.

  • 36 RBPs can affect the levels of GMDS-AS1.  








The Knockdown/knockout RNA-Seq assay for GMDS-AS1 is not available on ENCORE database.





36 RBPs can affect the gene expression of GMDS-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GMDS-AS1ENSG00000250903.473.26380125.33600-0.774602.663701.68410HepG2ADAR
GMDS-AS1ENSG00000250903.4140.87630209.29100-0.571101.881501.43310HepG2AKAP1
GMDS-AS1ENSG00000250903.4309.86460232.010000.417402.223701.59590HepG2AUH
GMDS-AS1ENSG00000250903.4164.9999088.008700.906603.749702.96220HepG2CPSF6
GMDS-AS1ENSG00000250903.4278.86510165.570500.752003.883303.18780HepG2EIF2S1
GMDS-AS1ENSG00000250903.4365.06760266.375800.454603.055602.42840HepG2ETF1
GMDS-AS1ENSG00000250903.495.17310184.58180-0.955605.201204.05730HepG2EWSR1
GMDS-AS1ENSG00000250903.4132.44380195.68150-0.563101.978101.32100HepG2FIP1L1
GMDS-AS1ENSG00000250903.4190.65210131.767700.532802.053401.36760HepG2FUBP3
GMDS-AS1ENSG00000250903.4264.49920171.252800.627002.940802.25650HepG2G3BP1
GMDS-AS1ENSG00000250903.4230.1592095.195701.273607.895706.89350HepG2HNRNPLL
GMDS-AS1ENSG00000250903.488.56420140.79450-0.668802.609702.02180HepG2HNRNPU
GMDS-AS1ENSG00000250903.4116.36280185.69140-0.674302.360101.77420HepG2MATR3
GMDS-AS1ENSG00000250903.494.28720160.62650-0.768602.468601.63990HepG2PABPC1
GMDS-AS1ENSG00000250903.4263.23010192.397900.452102.377601.79540HepG2PUS1
GMDS-AS1ENSG00000250903.4324.17450191.222100.761405.034404.22960HepG2QKI
GMDS-AS1ENSG00000250903.476.99630135.60090-0.816502.162801.53370HepG2RAVER1
GMDS-AS1ENSG00000250903.461.77030116.33330-0.913303.165902.51480HepG2RPS19
GMDS-AS1ENSG00000250903.4176.60170125.388600.494001.991201.42970HepG2SAFB2
GMDS-AS1ENSG00000250903.4100.73500226.40570-1.168307.165706.04550HepG2SF3A3
GMDS-AS1ENSG00000250903.4169.2845094.217100.845303.465502.68470HepG2SF3B1
GMDS-AS1ENSG00000250903.4260.32240183.820600.501902.276601.73310HepG2SF3B4
GMDS-AS1ENSG00000250903.4235.51110173.009700.444802.159701.52670HepG2SLBP
GMDS-AS1ENSG00000250903.469.73040191.85650-1.4602010.103609.32600HepG2SRSF1
GMDS-AS1ENSG00000250903.499.33120193.85150-0.964605.421804.63080HepG2UTP3
GMDS-AS1ENSG00000250903.463.22390128.74990-1.026004.304103.62340K562AGGF1
GMDS-AS1ENSG00000250903.464.57500133.96390-1.052804.606203.75580K562AKAP8L
GMDS-AS1ENSG00000250903.492.37980144.19380-0.642402.444001.62810K562DKC1
GMDS-AS1ENSG00000250903.432.4573063.98660-0.979202.352801.52830K562HNRNPU
GMDS-AS1ENSG00000250903.490.41660142.19100-0.653201.993301.30190K562KIF1C
GMDS-AS1ENSG00000250903.479.44270159.28680-1.003604.309503.12850K562MBNL1
GMDS-AS1ENSG00000250903.494.5645056.318100.747602.240601.50870K562MTPAP
GMDS-AS1ENSG00000250903.447.26000111.64660-1.240203.626302.58330K562NAA15
GMDS-AS1ENSG00000250903.4102.8540054.606100.913402.584101.78220K562PCBP3
GMDS-AS1ENSG00000250903.417.1189048.65150-1.506902.763602.01530K562PRPF8
GMDS-AS1ENSG00000250903.460.75530132.90000-1.129304.379403.71900K562PUS1
GMDS-AS1ENSG00000250903.461.70880129.45410-1.068904.614103.86830K562RBM15
GMDS-AS1ENSG00000250903.428.8922082.12170-1.507102.825001.60540K562SF1
GMDS-AS1ENSG00000250903.413.9556051.37230-1.880104.428303.53840K562SRSF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GMDS-AS1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of GMDS-AS1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for GMDS-AS1 is not avaliable on ENCORE database.