FRG1B

General Information

Gene Name       : FRG1B
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FRG1B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FRG1B is not avaliable on ENCORE database.



Proteins bound to RNA
  • FRG1B RNA is bound by 12 proteins.  







eCLIP assay for FRG1B is not avaliable on ENCORE database.





12 proteins are bound to FRG1B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr202963154529631575+3'-UTR,CDS3.805354.46864HepG2BCLAF1
chr202962313129623205+3'-UTR,CDS3.245829.54151K562ZNF622
chr202962314829623222+3'-UTR,CDS5.6780722.72631HepG2BCLAF1
chr202962313329623205+3'-UTR,CDS3.180445.37811HepG2ZNF800
chr202961190229611941+5'-UTR3.638324.20387K562ZNF622
chr202961194429612044+5'-UTR3.412479.47203HepG2GRWD1
chr202961194629612136+5'-UTR,intron-Proximal3.184833.94428K562DDX3X
chr202962586929625905+CDS,intron-Proximal3.259397.43909HepG2BCLAF1
chr202962590529625958+CDS5.543179.78817HepG2BCLAF1
chr202963266829632730+CDS,intron-Proximal3.9155410.78406HepG2BCLAF1
chr202962323029623256+CDS,intron-Proximal3.492743.73423K562UCHL5
chr202963262629632665+CDS4.276507.82199HepG2BCLAF1
chr202962586829625916+CDS,intron-Proximal3.444816.67170K562ZNF622
chr202961677829616844+intron-Distal4.926556.73640K562EXOSC5
chr202961222429612299+intron-Distal,intron-Proximal3.460579.36564K562RBM15
chr202961622029616261+intron-Distal4.470025.12361K562EXOSC5
chr202961609729616135+intron-Distal4.007023.01445K562EXOSC5
chr202962100629621055+intron-Distal3.098874.19275K562EXOSC5
chr202962128329621331+intron-Distal4.646845.44508K562EXOSC5
chr202961636029616421+intron-Distal3.394493.14999K562EXOSC5
chr202963124629631296+intron-Distal3.194064.08064K562KHSRP
chr202961213729612194+intron-Proximal3.129073.61570K562SRSF1
chr202962598929626064+intron-Proximal4.530167.53589K562AQR
chr202961212429612191+intron-Proximal4.1271511.20412K562RBM15
chr202963382529633888+intron-Proximal3.079293.86423K562GPKOW
chr202962326629623296+intron-Proximal3.300455.36110K562AQR
chr202962598429625989+intron-Proximal4.792564.48002K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FRG1B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FRG1B is not available on ENCORE database.

  • 32 RBPs can affect the levels of FRG1B.  








The Knockdown/knockout RNA-Seq assay for FRG1B is not available on ENCORE database.





32 RBPs can affect the gene expression of FRG1B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FRG1BENSG00000149531.10172.81390268.71170-0.636802.806501.76270HepG2AKAP8
FRG1BENSG00000149531.10164.63560264.16420-0.682202.754001.97140HepG2ASCC1
FRG1BENSG00000149531.10185.62350262.64710-0.500701.900201.37930HepG2DDX6
FRG1BENSG00000149531.10398.23060279.158700.512402.552401.93770HepG2EIF4A3
FRG1BENSG00000149531.10491.37770355.117200.468403.910903.21690HepG2ETF1
FRG1BENSG00000149531.10262.19080191.047800.456602.380901.65710HepG2PRPF4
FRG1BENSG00000149531.10364.53030262.223600.475102.306001.65910HepG2SF3B1
FRG1BENSG00000149531.10162.00890220.59310-0.445302.124801.62820HepG2SRSF9
FRG1BENSG00000149531.10395.16610291.063600.441003.036402.50430HepG2SSB
FRG1BENSG00000149531.10104.55590178.09860-0.768402.427901.78920HepG2SUPV3L1
FRG1BENSG00000149531.10214.22560156.582200.452101.799301.37800HepG2TIAL1
FRG1BENSG00000149531.10449.16600223.040601.009808.733607.61190HepG2U2AF1
FRG1BENSG00000149531.10299.90120188.546100.669504.819403.97410HepG2ZC3H8
FRG1BENSG00000149531.10546.92270673.50710-0.300402.150701.63960K562AGGF1
FRG1BENSG00000149531.10510.65410700.81020-0.456703.397202.67190K562AKAP8L
FRG1BENSG00000149531.10588.61220423.213600.475803.586202.69390K562CPSF6
FRG1BENSG00000149531.10465.32700615.47210-0.403403.338202.63280K562DDX47
FRG1BENSG00000149531.10186.06270285.73580-0.618903.948703.00550K562EIF3G
FRG1BENSG00000149531.10579.36690430.662600.427802.607401.77810K562FMR1
FRG1BENSG00000149531.10202.61050319.69790-0.658003.485502.81810K562FXR1
FRG1BENSG00000149531.10542.24240344.252100.655404.067203.16840K562G3BP2
FRG1BENSG00000149531.10613.10850478.959500.356102.035701.38130K562GRSF1
FRG1BENSG00000149531.10585.69680444.737300.397102.232401.51460K562HSPD1
FRG1BENSG00000149531.10259.93010373.55780-0.523203.402002.36430K562MATR3
FRG1BENSG00000149531.10545.58370394.867500.466303.548702.63950K562MTPAP
FRG1BENSG00000149531.10412.81230306.983400.427202.477601.31570K562NCBP2
FRG1BENSG00000149531.10232.65330363.64640-0.644404.761903.91270K562PTBP1
FRG1BENSG00000149531.10443.28940326.592100.440702.773101.44250K562RBM25
FRG1BENSG00000149531.101284.03580711.020500.852603.951302.02120K562RBM39
FRG1BENSG00000149531.10290.57000448.54420-0.626403.522102.38080K562RPS3
FRG1BENSG00000149531.10211.17110356.48150-0.755405.466504.47880K562SRSF1
FRG1BENSG00000149531.10426.65510294.730600.533603.209101.80800K562SSB
FRG1BENSG00000149531.10584.31460430.396800.441002.617501.30410K562SSRP1
FRG1BENSG00000149531.10704.29940333.763801.077307.785205.79480K562U2AF1
FRG1BENSG00000149531.10677.37800510.358200.408402.986402.08480K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FRG1B is not available on ENCORE database.





21 RBPs can affect the splicing of FRG1B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFRG1BENSG00000149531.10chr20+2963069829630774296282262962833129631537296319270.087000.000050.00837includedHepG2G3BP1
SEFRG1BENSG00000149531.10chr20+2962913229629179296282262962833129631537296319270.132000.000040.00133includedK562SRSF1
SEFRG1BENSG00000149531.10chr20+2962913229629179296282262962833129631537296316290.119000.000070.01977includedK562FTO
SEFRG1BENSG00000149531.10chr20+296129612961306129612260296123972961426029614327-0.307000.000020.00070excludedHepG2U2AF1
SEFRG1BENSG00000149531.10chr20+2961426029614327296122602961239729623128296232540.056000.000010.00561includedK562PUM1
SEFRG1BENSG00000149531.10chr20+2961296129613061296122602961239729614260296143270.304000.000010.00368includedK562FMR1
SEFRG1BENSG00000149531.10chr20+2963069829630774296282262962833129631537296319270.108000.000030.00128includedHepG2HNRNPK
SEFRG1BENSG00000149531.10chr20+2962404229624092296231282962325429625872296259840.186000.000010.00030includedHepG2U2AF2
SEFRG1BENSG00000149531.10chr20+296129612961306129612260296123972961426029614327-0.492000.000000.00000excludedHepG2U2AF2
SEFRG1BENSG00000149531.10chr20+2963069829630774296282262962833129631537296319270.091000.000010.00105includedHepG2AKAP1
SEFRG1BENSG00000149531.10chr20+2961426029614327296122602961239729623128296232540.129000.000270.01374includedK562FXR1
SEFRG1BENSG00000149531.10chr20+296129612961306129612260296123972961426029614327-0.287000.000030.00237excludedK562FXR1
SEFRG1BENSG00000149531.10chr20+2962737929627519296258722962598429628226296283310.194000.000340.03263includedK562SUPV3L1
SEFRG1BENSG00000149531.10chr20+296142602961432729612260296123972962312829623254-0.069000.000740.01335excludedK562PUS1
SEFRG1BENSG00000149531.10chr20+2962404229624092296231282962325429625872296259840.201000.000440.03300includedHepG2FTO
SEFRG1BENSG00000149531.10chr20+2963069829630774296282262962833129631537296319270.082000.001220.02993includedHepG2SRSF1
SEFRG1BENSG00000149531.10chr20+296129612961306129612260296123972961426029614327-0.175000.001240.03621excludedHepG2SF3A3
SEFRG1BENSG00000149531.10chr20+2963069829630774296282262962833129631537296319270.137000.000000.00004includedHepG2IGF2BP3
SEFRG1BENSG00000149531.10chr20+2961296129613061296122602961239729614260296143270.291000.000110.01761includedHepG2TAF15
SEFRG1BENSG00000149531.10chr20+2962737929627519296258722962598429628226296283310.147000.000430.01986includedK562HNRNPU
SEFRG1BENSG00000149531.10chr20+296142602961432729612260296123972962312829623254-0.078000.001260.03263excludedK562RBM15
SEFRG1BENSG00000149531.10chr20+296142602961432729612260296123972962312829623254-0.075000.001100.02995excludedK562AGGF1
SEFRG1BENSG00000149531.10chr20+2961296129613061296122602961239729614260296143270.289000.000230.03297includedK562CPSF6
SEFRG1BENSG00000149531.10chr20+2963069829630774296282262962833129631537296319270.093000.001770.09248includedHepG2SRSF9
A3SSFRG1BENSG00000149531.10chr20+2963259529632721296326102963272129631537296316290.082000.000000.00001longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FRG1B is not avaliable on ENCORE database.