DDX26B

General Information

Gene Name       : DDX26B
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: DDX26B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for DDX26B is not avaliable on ENCORE database.



Proteins bound to RNA
  • DDX26B RNA is bound by 12 proteins.  







eCLIP assay for DDX26B is not avaliable on ENCORE database.





12 proteins are bound to DDX26B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX134711122134711214+CDS3.586666.09767K562UCHL5
chrX134703334134703445+CDS,intron-Proximal3.370888.12819K562KHSRP
chrX134655002134655124+CDS,intron-Proximal3.074716.78249K562PRPF8
chrX134715451134715494+CDS,intron-Proximal3.117363.12941K562UCHL5
chrX134714992134715056+CDS4.081603.11168K562ZNF622
chrX134679336134679383+CDS,intron-Proximal3.743523.47293K562U2AF2
chrX134673476134673562+intron-Distal3.431944.51915K562MATR3
chrX134683915134683990+intron-Distal4.593276.73684K562KHSRP
chrX134680865134680957+intron-Distal,intron-Proximal3.363884.93120K562KHSRP
chrX134674457134674582+intron-Distal3.531484.26619K562MATR3
chrX134665145134665249+intron-Distal5.7543210.46904K562PTBP1
chrX134704177134704324+intron-Distal3.9815215.38930K562KHSRP
chrX134665402134665460+intron-Distal4.515275.61723K562MATR3
chrX134664136134664193+intron-Distal3.659294.52210K562KHSRP
chrX134678471134678587+intron-Distal5.250927.94214K562MATR3
chrX134704007134704119+intron-Distal4.643045.02888K562KHSRP
chrX134703836134703891+intron-Distal4.496053.27618K562RBFOX2
chrX134665149134665277+intron-Distal5.3377210.38449K562MATR3
chrX134673377134673476+intron-Distal4.717855.90588K562MATR3
chrX134664028134664107+intron-Distal4.193515.02888K562KHSRP
chrX134665408134665468+intron-Distal3.916746.86368K562PTBP1
chrX134665080134665158+intron-Distal3.6923310.80729K562QKI
chrX134678587134678644+intron-Distal4.917076.19517K562MATR3
chrX134675384134675523+intron-Distal3.178153.91539K562HNRNPL
chrX134679534134679610+intron-Distal,intron-Proximal4.231053.54514K562TIA1
chrX134655429134655493+intron-Distal5.227076.03057K562EFTUD2
chrX134674543134674616+intron-Distal3.986025.16181K562PTBP1
chrX134655423134655496+intron-Distal4.135685.99968K562PRPF8
chrX134665468134665521+intron-Distal3.128123.69083K562PTBP1
chrX134683990134684043+intron-Distal4.042234.10688K562KHSRP
chrX134703786134703836+intron-Distal6.0805516.72158K562RBFOX2
chrX134706631134706698+intron-Distal,intron-Proximal4.327805.62025K562KHSRP
chrX134658989134659106+intron-Distal3.431035.57010K562KHSRP
chrX134655258134655332+intron-Proximal3.893395.28701K562PRPF8
chrX134679514134679579+intron-Proximal3.953183.02181K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for DDX26B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for DDX26B is not available on ENCORE database.

  • 43 RBPs can affect the levels of DDX26B.  








The Knockdown/knockout RNA-Seq assay for DDX26B is not available on ENCORE database.





43 RBPs can affect the gene expression of DDX26B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
DDX26BENSG00000165359.102013.576301606.713900.325502.534201.37130K562ABCF1
DDX26BENSG00000165359.10738.314901084.18580-0.554308.162607.25850K562AGGF1
DDX26BENSG00000165359.101090.740801401.49170-0.361703.191602.56980K562AQR
DDX26BENSG00000165359.101494.898501126.533700.408103.272402.32210K562BOP1
DDX26BENSG00000165359.101884.847201349.416000.482002.457801.46720K562CNOT7
DDX26BENSG00000165359.102193.958601400.462300.6475015.8624014.41840K562DDX47
DDX26BENSG00000165359.10623.95800453.758500.459403.012401.60880K562DNAJC21
DDX26BENSG00000165359.10450.20930697.38680-0.631405.452004.14420K562EFTUD2
DDX26BENSG00000165359.101486.348701127.240800.398905.236004.29160K562EIF2S2
DDX26BENSG00000165359.10736.52160429.215400.778904.380603.08820K562EIF3A
DDX26BENSG00000165359.101101.16230757.705100.539206.561805.35190K562EIF3G
DDX26BENSG00000165359.102897.710401843.733700.6522016.8021014.60150K562EIF4G2
DDX26BENSG00000165359.10841.05460611.351000.460103.159801.93860K562FKBP4
DDX26BENSG00000165359.101337.02120874.687100.612104.721403.74150K562G3BP2
DDX26BENSG00000165359.101130.061001502.22270-0.410703.936603.03820K562GRSF1
DDX26BENSG00000165359.10579.43480949.95810-0.713206.543805.01840K562HNRNPM
DDX26BENSG00000165359.101888.167701231.830300.616103.401301.80060K562ILF2
DDX26BENSG00000165359.10698.18730440.807500.663405.456103.36320K562ILF3
DDX26BENSG00000165359.10703.44970981.97870-0.481204.649403.55410K562MAGOH
DDX26BENSG00000165359.10763.28910980.04700-0.360602.953001.99650K562MATR3
DDX26BENSG00000165359.101157.75030965.732800.261502.640001.84910K562MTPAP
DDX26BENSG00000165359.101933.508101296.394800.576603.442702.04750K562PABPC1
DDX26BENSG00000165359.10628.23850873.79040-0.476003.961202.78400K562PCBP2
DDX26BENSG00000165359.101804.28400993.019800.8614011.339109.65780K562PCBP3
DDX26BENSG00000165359.10935.45560687.359400.444503.429601.81800K562PHF6
DDX26BENSG00000165359.101446.52810761.698300.9252018.4492016.49110K562POLR2G
DDX26BENSG00000165359.10960.522801311.08980-0.448904.012403.00100K562PPIG
DDX26BENSG00000165359.10461.88780678.63860-0.555104.082703.17100K562PRPF8
DDX26BENSG00000165359.10757.89060954.02410-0.332002.511301.87450K562PTBP1
DDX26BENSG00000165359.101465.695102011.67260-0.456804.730603.66670K562PUF60
DDX26BENSG00000165359.102584.722402096.517000.301904.072302.90040K562PUM2
DDX26BENSG00000165359.10584.14640915.01220-0.647505.544204.30630K562RBM22
DDX26BENSG00000165359.101347.50650962.853200.484804.358902.95340K562NELFE
DDX26BENSG00000165359.10933.65920746.282300.323103.223201.51460K562RPS10
DDX26BENSG00000165359.101835.500101203.680800.608603.866001.97620K562RPS3A
DDX26BENSG00000165359.10474.73080818.62330-0.786103.076101.78670K562SF1
DDX26BENSG00000165359.10537.03120909.99520-0.7609010.993809.22530K562SF3B4
DDX26BENSG00000165359.10596.16610940.27760-0.657402.666401.46920K562SNRNP200
DDX26BENSG00000165359.101029.84670763.978100.430704.315503.28300K562SYNCRIP
DDX26BENSG00000165359.10720.62550946.59680-0.393502.798702.08770K562TARDBP
DDX26BENSG00000165359.102766.352402267.997100.286502.958401.50310K562UBE2L3
DDX26BENSG00000165359.101367.221901137.739200.265002.862802.13210K562UPF1
DDX26BENSG00000165359.101269.090701012.357400.326004.193303.16620K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for DDX26B is not available on ENCORE database.





14 RBPs can affect the splicing of DDX26B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEDDX26BENSG00000165359.10chrX+134704360134704471134703261134703356134706739134706958-0.274000.004360.09463excludedK562AKAP8L
SEDDX26BENSG00000165359.10chrX+1347043601347044711347032611347033561347067391347069580.349000.000700.02943includedK562FXR1
SEDDX26BENSG00000165359.10chrX+134715452134715556134714955134715068134716165134716427-0.223000.000260.01310excludedK562TARDBP
SEDDX26BENSG00000165359.10chrX+134704360134704471134703261134703356134706739134706958-0.369000.000020.00189excludedK562HNRNPU
SEDDX26BENSG00000165359.10chrX+134704360134704471134703261134703356134706739134706958-0.427000.000000.00020excludedK562RBM15
SEDDX26BENSG00000165359.10chrX+134704360134704471134703261134703356134706739134706958-0.283000.004860.09113excludedK562AGGF1
SEDDX26BENSG00000165359.10chrX+134704360134704471134703261134703356134706739134706958-0.241000.000200.02934excludedK562CPSF6
SEDDX26BENSG00000165359.10chrX+134704360134704480134703261134703356134706739134706958-0.260000.002660.08417excludedK562SF3B1
SEDDX26BENSG00000165359.10chrX+1347043601347044801347032611347033561347067391347069580.333000.001550.06196includedK562HNRNPK
SEDDX26BENSG00000165359.10chrX+1346874311346875961346859181346860711346900921346902250.110000.001170.02203includedK562HNRNPC
SEDDX26BENSG00000165359.10chrX+1347043601347044711347032611347033561347067391347069580.300000.002560.04133includedK562HNRNPC
A5SSDDX26BENSG00000165359.10chrX+1347111171347113521347111171347112201347137121347140870.395000.000210.09610longerK562XRCC6
A5SSDDX26BENSG00000165359.10chrX+134711117134711352134711117134711220134713712134714087-0.246000.000950.07380shorterK562RBM15
A5SSDDX26BENSG00000165359.10chrX+1347111171347113521347111171347112201347137121347140870.288000.000010.00521longerK562DROSHA
A5SSDDX26BENSG00000165359.10chrX+134711117134711261134711117134711220134713712134714087-0.286000.000830.06960shorterK562AKAP8L
RIDDX26BENSG00000165359.10chrX+134703261134706958134703261134703356134706739134706958-0.538000.000370.08318excludedK562GEMIN5
RIDDX26BENSG00000165359.10chrX+134703261134706958134703261134703356134706739134706958-0.263000.007640.06236excludedK562AKAP8L
RIDDX26BENSG00000165359.10chrX+134703261134706958134703261134703356134706739134706958-0.274000.003360.03469excludedK562RBM15
RIDDX26BENSG00000165359.10chrX+134703261134706958134703261134703356134706739134706958-0.283000.010310.09105excludedK562UTP18

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for DDX26B is not avaliable on ENCORE database.