CXorf56

General Information

Gene Name       : CXorf56
Gene ID             : ENSG00000018610.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CXorf56)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CXorf56ENSG00000018610.1431.6327.9629.80ENCSR000AEF
HepG2CXorf56ENSG00000018610.1417.2122.2919.75ENCSR985KAT
K562CXorf56ENSG00000018610.1435.0636.6835.87ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CXorf56 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CXorf56 RNA is bound by 4 proteins.  







eCLIP assay for CXorf56 is not avaliable on ENCORE database.





4 proteins are bound to CXorf56 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX118672315118672369-3'-UTR,intron-Distal3.349213.42164K562UPF1
chrX118673202118673322-3'-UTR,intron-Distal5.0314127.19164K562AKAP1
chrX118673185118673249-3'-UTR,intron-Distal5.5338310.18755K562UPF1
chrX118673218118673334-3'-UTR,intron-Distal4.099016.86497HepG2UPF1
chrX118672666118672730-3'-UTR,intron-Distal5.165105.25389K562UPF1
chrX118672172118672242-3'-UTR,intron-Distal4.8163115.28381K562PUM2
chrX118672873118672930-3'-UTR,intron-Distal3.804447.13820K562UPF1
chrX118673077118673151-3'-UTR,intron-Distal3.8964710.31199K562UPF1
chrX118672404118672450-3'-UTR,intron-Distal3.418885.63043K562AKAP1
chrX118676465118676515-CDS,intron-Distal,intron-Proximal4.124263.59941K562UCHL5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CXorf56 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CXorf56 is not available on ENCORE database.

  • 40 RBPs can affect the levels of CXorf56.  








The Knockdown/knockout RNA-Seq assay for CXorf56 is not available on ENCORE database.





40 RBPs can affect the gene expression of CXorf56 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CXorf56ENSG00000018610.9641.58170364.391000.816006.250105.48800HepG2AKAP1
CXorf56ENSG00000018610.9138.55100241.09390-0.799203.335302.35040HepG2BCLAF1
CXorf56ENSG00000018610.9194.50360286.89140-0.560702.618301.94740HepG2CPSF6
CXorf56ENSG00000018610.9214.37860405.67280-0.920209.805808.54820HepG2DAZAP1
CXorf56ENSG00000018610.9314.42500231.924500.439002.211001.46430HepG2EWSR1
CXorf56ENSG00000018610.9377.38750259.060000.542702.188801.50010HepG2FIP1L1
CXorf56ENSG00000018610.9235.17880325.20170-0.467601.970701.42420HepG2GPKOW
CXorf56ENSG00000018610.9245.57940338.04620-0.461002.369901.70260HepG2HNRNPF
CXorf56ENSG00000018610.9212.97090332.88410-0.644403.968003.11460HepG2IGF2BP1
CXorf56ENSG00000018610.9169.88250275.19080-0.695903.566002.71700HepG2NSUN2
CXorf56ENSG00000018610.9143.58130351.52220-1.2917015.2881014.04710HepG2PCBP1
CXorf56ENSG00000018610.9303.71220221.184700.457402.684301.92040HepG2PRPF4
CXorf56ENSG00000018610.9168.15070407.35970-1.2765014.1124012.67340HepG2PUM2
CXorf56ENSG00000018610.9605.10700417.026900.537004.849604.21220HepG2RBM22
CXorf56ENSG00000018610.9308.28280398.06910-0.368802.102601.61760HepG2NELFE
CXorf56ENSG00000018610.9262.51080370.73590-0.498003.257802.59620HepG2RECQL
CXorf56ENSG00000018610.9125.79710307.17530-1.2880010.538509.24520HepG2SF3B1
CXorf56ENSG00000018610.9239.14990372.40400-0.639004.805504.05930HepG2SF3B4
CXorf56ENSG00000018610.9241.38140332.10160-0.460302.494701.83020HepG2SRSF7
CXorf56ENSG00000018610.9243.93270316.22630-0.374502.022001.53550HepG2SRSF9
CXorf56ENSG00000018610.9294.83700408.94180-0.472003.428402.87130HepG2SSB
CXorf56ENSG00000018610.9195.19020302.52420-0.632203.360102.57030HepG2TARDBP
CXorf56ENSG00000018610.9155.13710397.16340-1.3562010.207208.56190HepG2UBE2L3
CXorf56ENSG00000018610.982.20170160.42830-0.964704.153003.22260HepG2UCHL5
CXorf56ENSG00000018610.9317.92690221.035400.524303.161502.52890HepG2UTP3
CXorf56ENSG00000018610.9331.10240251.793400.394902.394601.87480HepG2ZNF622
CXorf56ENSG00000018610.9821.78310660.667800.314702.748202.18150K562AGGF1
CXorf56ENSG00000018610.9739.22130991.29440-0.423302.737001.31560K562CKAP4
CXorf56ENSG00000018610.9646.33950881.91070-0.448304.739203.83010K562EIF2S2
CXorf56ENSG00000018610.9785.27690504.272900.638908.271107.29530K562FXR1
CXorf56ENSG00000018610.9380.57230527.54060-0.471103.041201.83970K562HNRNPF
CXorf56ENSG00000018610.9969.47500708.629400.452103.279201.92290K562HNRNPK
CXorf56ENSG00000018610.9900.83850644.764400.482403.362002.32880K562HNRNPM
CXorf56ENSG00000018610.9313.21730461.46410-0.559102.697101.77840K562KRR1
CXorf56ENSG00000018610.9373.50730529.68330-0.504002.944502.00690K562PSIP1
CXorf56ENSG00000018610.91087.030301315.34520-0.275002.667601.72470K562PUM2
CXorf56ENSG00000018610.9969.15410681.753200.507404.290103.63610K562PUS1
CXorf56ENSG00000018610.9355.57740483.24160-0.442602.683201.70770K562RCC2
CXorf56ENSG00000018610.9698.96760521.659300.422002.607501.81340K562SYNCRIP
CXorf56ENSG00000018610.9376.94580509.46990-0.434602.313401.46290K562TIAL1
CXorf56ENSG00000018610.9289.02610634.71960-1.1349013.1998010.91380K562UCHL5
CXorf56ENSG00000018610.9484.83810832.97340-0.7808013.2475011.81710K562UPF1
CXorf56ENSG00000018610.9584.86540868.26950-0.570004.536202.99130K562UTP3
CXorf56ENSG00000018610.9503.32350712.74760-0.501904.370103.26080K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CXorf56 is not available on ENCORE database.





3 RBPs can affect the splicing of CXorf56 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECXorf56ENSG00000018610.9chrX-118678315118678454118676467118676557118679425118679467-0.053000.000260.00391excludedK562AQR
A3SSCXorf56ENSG00000018610.9chrX-1186752901186754841186752901186753831186764671186767300.055000.000000.00000longerK562AQR
A3SSCXorf56ENSG00000018610.9chrX-1186735321186737771186735321186737521186752901186754180.084000.000000.00000longerK562AQR
A3SSCXorf56ENSG00000018610.9chrX-1186783151186785451186783151186784541186794251186794670.088000.000000.00001longerK562AQR
MXECXorf56ENSG00000018610.9chrX-118678315118678454118679425118679467118676467118676557118694230118694348-0.082000.001920.089472includedK562LARP4
MXECXorf56ENSG00000018610.9chrX-1186794251186794671186942301186943731186783151186784541186991941186993970.076000.000000.000051includedK562AQR
MXECXorf56ENSG00000018610.9chrX-1186794251186794671186942301186943481186783151186784541186991941186993970.121000.005380.038281includedK562AQR
MXECXorf56ENSG00000018610.9chrX-118679425118679467118694230118694348118678315118678454118699194118699397-0.220000.000360.016012includedK562DHX30
MXECXorf56ENSG00000018610.9chrX-118678315118678454118679425118679467118676467118676557118694230118694348-0.162000.004260.091252includedK562DHX30

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CXorf56 is not avaliable on ENCORE database.