CTC-228N24.3

General Information

Gene Name : CTC-228N24.3
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTC-228N24.3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTC-228N24.3 is not avaliable on ENCORE database.

Proteins bound to RNA

CTC-228N24.3 RNA is bound by 4 proteins.

eCLIP assay for CTC-228N24.3 is not avaliable on ENCORE database.

4 proteins are bound to CTC-228N24.3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	127395619	127395692	-	intron-Distal	3.23359	4.30679	K562	KHSRP
chr5	127395949	127396031	-	intron-Distal	3.92317	3.46495	K562	TARDBP
chr5	127369267	127369318	-	intron-Distal	4.53454	4.80399	K562	EXOSC5
chr5	127384245	127384301	-	intron-Distal	3.90379	3.01456	K562	EXOSC5
chr5	127391645	127391734	-	intron-Distal	3.99489	3.60944	K562	TARDBP
chr5	127409761	127409844	-	intron-Distal	4.23212	3.42734	K562	PTBP1
chr5	127381845	127381923	-	intron-Distal	4.06845	3.59909	K562	EXOSC5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CTC-228N24.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CTC-228N24.3 is not available on ENCORE database.
63 RBPs can affect the levels of CTC-228N24.3.

The Knockdown/knockout RNA-Seq assay for CTC-228N24.3 is not available on ENCORE database.

63 RBPs can affect the gene expression of CTC-228N24.3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTC-228N24.3	ENSG00000245937.3	220.05430	134.59550	0.70910	3.08630	2.25800	HepG2	ASCC1
CTC-228N24.3	ENSG00000245937.3	183.77640	116.67550	0.65540	2.81840	2.03980	HepG2	CALR
CTC-228N24.3	ENSG00000245937.3	210.78510	93.05790	1.17950	5.50880	4.42490	HepG2	CNOT7
CTC-228N24.3	ENSG00000245937.3	82.92280	134.73030	-0.70020	2.19650	1.57530	HepG2	CPSF6
CTC-228N24.3	ENSG00000245937.3	209.64720	139.98000	0.58260	2.69400	2.05820	HepG2	CELF1
CTC-228N24.3	ENSG00000245937.3	233.31600	155.81900	0.58230	2.29840	1.72320	HepG2	DDX3X
CTC-228N24.3	ENSG00000245937.3	140.55670	77.81920	0.85290	2.99680	2.06110	HepG2	EIF3D
CTC-228N24.3	ENSG00000245937.3	245.72590	138.46590	0.82740	3.46740	2.70060	HepG2	EIF4B
CTC-228N24.3	ENSG00000245937.3	261.94050	189.59510	0.46620	2.46570	1.89290	HepG2	ETF1
CTC-228N24.3	ENSG00000245937.3	216.47920	135.28160	0.67820	2.84590	2.16250	HepG2	IGF2BP2
CTC-228N24.3	ENSG00000245937.3	202.42000	122.77010	0.72130	3.87890	3.18600	HepG2	PCBP1
CTC-228N24.3	ENSG00000245937.3	171.92830	124.92690	0.46060	1.77000	1.31280	HepG2	PTBP1
CTC-228N24.3	ENSG00000245937.3	246.74710	151.24620	0.70600	4.52870	3.80990	HepG2	PUM1
CTC-228N24.3	ENSG00000245937.3	95.05110	151.14030	-0.66910	2.56640	1.92010	HepG2	PUM2
CTC-228N24.3	ENSG00000245937.3	63.08820	122.78830	-0.96070	3.56300	2.80460	HepG2	RBM25
CTC-228N24.3	ENSG00000245937.3	185.38840	110.44670	0.74710	3.98160	3.34290	HepG2	SRSF9
CTC-228N24.3	ENSG00000245937.3	310.75110	641.76970	-1.04630	16.45770	15.19680	K562	AGGF1
CTC-228N24.3	ENSG00000245937.3	354.42570	667.77620	-0.91390	10.79800	9.39200	K562	AKAP8L
CTC-228N24.3	ENSG00000245937.3	274.50910	565.93220	-1.04380	10.07880	9.06540	K562	AQR
CTC-228N24.3	ENSG00000245937.3	480.36830	700.63100	-0.54450	5.91030	4.51130	K562	ATP5C1
CTC-228N24.3	ENSG00000245937.3	258.68920	343.27950	-0.40820	2.32050	1.44290	K562	BCLAF1
CTC-228N24.3	ENSG00000245937.3	344.38370	499.59740	-0.53670	3.36650	2.40360	K562	BOP1
CTC-228N24.3	ENSG00000245937.3	287.56820	531.19800	-0.88530	9.50300	8.03230	K562	CPSF6
CTC-228N24.3	ENSG00000245937.3	1017.70220	700.47670	0.53880	7.76830	6.75220	K562	DDX47
CTC-228N24.3	ENSG00000245937.3	198.09350	274.52000	-0.47070	2.54750	1.30570	K562	DDX6
CTC-228N24.3	ENSG00000245937.3	585.17910	718.66460	-0.29640	2.32610	1.53240	K562	DKC1
CTC-228N24.3	ENSG00000245937.3	173.84090	281.48620	-0.69530	3.95930	2.85290	K562	EFTUD2
CTC-228N24.3	ENSG00000245937.3	442.09680	284.04120	0.63820	2.65930	1.67830	K562	EIF3A
CTC-228N24.3	ENSG00000245937.3	415.05260	539.15980	-0.37740	2.19440	1.43810	K562	FIP1L1
CTC-228N24.3	ENSG00000245937.3	334.90370	507.14940	-0.59870	4.45230	3.45180	K562	GPKOW
CTC-228N24.3	ENSG00000245937.3	356.58310	731.64370	-1.03690	5.45970	3.52970	K562	HNRNPA2B1
CTC-228N24.3	ENSG00000245937.3	228.54730	366.57510	-0.68160	4.08250	2.54250	K562	HNRNPK
CTC-228N24.3	ENSG00000245937.3	347.74490	458.66550	-0.39940	2.56060	1.69960	K562	HNRNPU
CTC-228N24.3	ENSG00000245937.3	922.72220	731.00930	0.33590	2.09380	1.39890	K562	HSPD1
CTC-228N24.3	ENSG00000245937.3	260.42290	373.22080	-0.51920	3.23820	1.92090	K562	IGF2BP3
CTC-228N24.3	ENSG00000245937.3	566.33310	708.72750	-0.32360	2.28460	1.54340	K562	KIF1C
CTC-228N24.3	ENSG00000245937.3	489.09330	678.38600	-0.47200	2.62150	1.58370	K562	MAK16
CTC-228N24.3	ENSG00000245937.3	506.64040	384.93630	0.39620	2.55450	1.67140	K562	MATR3
CTC-228N24.3	ENSG00000245937.3	591.88150	793.94680	-0.42370	3.44090	2.40840	K562	MBNL1
CTC-228N24.3	ENSG00000245937.3	346.12280	495.04030	-0.51630	3.45830	2.47420	K562	METAP2
CTC-228N24.3	ENSG00000245937.3	367.55860	556.49480	-0.59840	3.37140	2.37940	K562	NAA15
CTC-228N24.3	ENSG00000245937.3	185.56020	282.48130	-0.60630	3.42210	2.04590	K562	NCBP2
CTC-228N24.3	ENSG00000245937.3	475.45310	577.33040	-0.28010	2.00140	1.35430	K562	NSUN2
CTC-228N24.3	ENSG00000245937.3	481.46290	782.53560	-0.70070	3.36930	1.98660	K562	PABPC1
CTC-228N24.3	ENSG00000245937.3	294.14800	640.32030	-1.12230	5.80730	4.21710	K562	PABPN1
CTC-228N24.3	ENSG00000245937.3	185.32980	343.19980	-0.88900	6.61960	5.08830	K562	PCBP2
CTC-228N24.3	ENSG00000245937.3	190.44870	273.91990	-0.52440	2.29430	1.60880	K562	PRPF8
CTC-228N24.3	ENSG00000245937.3	335.55220	662.35300	-0.98110	10.19330	9.19670	K562	PUS1
CTC-228N24.3	ENSG00000245937.3	379.18600	645.27850	-0.76700	8.06810	7.08570	K562	RBM15
CTC-228N24.3	ENSG00000245937.3	231.45850	359.37960	-0.63480	3.89540	2.88660	K562	RBM22
CTC-228N24.3	ENSG00000245937.3	140.09310	275.19660	-0.97410	3.79470	2.19830	K562	RBM25
CTC-228N24.3	ENSG00000245937.3	395.03130	278.97650	0.50170	2.32840	1.58210	K562	RPS19
CTC-228N24.3	ENSG00000245937.3	401.92360	246.66700	0.70430	4.01730	2.78110	K562	RPS3
CTC-228N24.3	ENSG00000245937.3	282.92630	585.78460	-1.04990	4.31950	2.72030	K562	SF1
CTC-228N24.3	ENSG00000245937.3	404.70920	569.69480	-0.49330	4.38400	3.37510	K562	SF3A3
CTC-228N24.3	ENSG00000245937.3	305.35020	482.36790	-0.65970	4.12880	2.92330	K562	SF3B1
CTC-228N24.3	ENSG00000245937.3	142.81210	301.64120	-1.07870	4.60930	3.49560	K562	SF3B4
CTC-228N24.3	ENSG00000245937.3	334.83490	672.43400	-1.00590	4.68860	2.95710	K562	SNRNP200
CTC-228N24.3	ENSG00000245937.3	465.22050	583.66620	-0.32720	2.42240	1.53960	K562	SRPK2
CTC-228N24.3	ENSG00000245937.3	281.82460	371.80150	-0.39970	1.96090	1.35850	K562	TARDBP
CTC-228N24.3	ENSG00000245937.3	180.50100	281.25170	-0.63990	2.70940	1.63120	K562	U2AF1
CTC-228N24.3	ENSG00000245937.3	200.16110	290.35410	-0.53670	2.36150	1.61950	K562	U2AF2
CTC-228N24.3	ENSG00000245937.3	403.52390	671.45350	-0.73460	3.51680	2.00150	K562	UTP18
CTC-228N24.3	ENSG00000245937.3	381.77620	555.02110	-0.53980	3.12940	1.84580	K562	UTP3
CTC-228N24.3	ENSG00000245937.3	410.31620	523.80150	-0.35230	2.07600	1.31940	K562	WDR3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CTC-228N24.3 is not available on ENCORE database.

5 RBPs can affect the splicing of CTC-228N24.3 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CTC-228N24.3	ENSG00000245937.3	chr5	-	127412638	127412785	127396835	127396936	127417664	127417886	-0.26200	0.00313	0.03175	excluded	K562	AQR
SE	CTC-228N24.3	ENSG00000245937.3	chr5	-	127417664	127417883	127396835	127396936	127418426	127418666	-0.37900	0.00004	0.01483	excluded	K562	SBDS
SE	CTC-228N24.3	ENSG00000245937.3	chr5	-	127412638	127412785	127396835	127396936	127417664	127417886	-0.22600	0.00047	0.06748	excluded	K562	ZC3H8
SE	CTC-228N24.3	ENSG00000245937.3	chr5	-	127412638	127412785	127396835	127396936	127418426	127418573	-0.29900	0.00041	0.06790	excluded	K562	NPM1
SE	CTC-228N24.3	ENSG00000245937.3	chr5	-	127417664	127417883	127396835	127396936	127418426	127418666	0.52000	0.00001	0.00037	included	K562	HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTC-228N24.3

General Information

Functions

Localization

Domains (AlphaFold: CTC-228N24.3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTC-228N24.3 is not avaliable on ENCORE database.

4 proteins are bound to CTC-228N24.3 RNA:

eCLIP assay for CTC-228N24.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTC-228N24.3 is not available on ENCORE database.

63 RBPs can affect the gene expression of CTC-228N24.3 :

The Knockdown/knockout RNA-Seq assay for CTC-228N24.3 is not available on ENCORE database.

5 RBPs can affect the splicing of CTC-228N24.3 :

The Knockdown/knockout RNA-Seq assay for CTC-228N24.3 is not avaliable on ENCORE database.