CNIH4

General Information

Gene Name       : CNIH4
Gene ID             : ENSG00000143771.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CNIH4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CNIH4ENSG00000143771.1117.1115.7716.44ENCSR000AEF
HepG2CNIH4ENSG00000143771.1142.7536.8939.82ENCSR985KAT
K562CNIH4ENSG00000143771.1138.1129.3033.70ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CNIH4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CNIH4 RNA is bound by 14 proteins.  







eCLIP assay for CNIH4 is not avaliable on ENCORE database.





14 proteins are bound to CNIH4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1224563496224563643+3'-UTR,CDS,intron-Distal,intron-Proximal3.741409.54328K562YBX3
chr1224563620224563677+3'-UTR,intron-Distal3.991828.50867K562PABPC4
chr1224563514224563684+3'-UTR,CDS,intron-Distal3.285694.20072K562IGF2BP1
chr1224563696224563826+3'-UTR,intron-Distal3.950833.80314K562CSTF2T
chr1224563496224563656+3'-UTR,CDS,intron-Distal,intron-Proximal3.455648.28887HepG2LARP4
chr1224544579224544682+5'-UTR,CDS4.421169.66125HepG2DDX3X
chr1224544625224544697+5'-UTR,CDS,intron-Proximal5.7536829.53279K562DDX3X
chr1224553584224553694+CDS,intron-Proximal3.460736.86854K562SND1
chr1224558985224559057+CDS,intron-Distal3.272123.27746HepG2LIN28B
chr1224558986224559073+CDS,intron-Distal3.456934.37595HepG2LARP4
chr1224558982224559043+CDS,intron-Distal,intron-Proximal3.549423.14203K562LIN28B
chr1224544654224544712+CDS,intron-Proximal3.792214.95207K562GEMIN5
chr1224559031224559097+CDS,intron-Distal4.153663.48040HepG2SND1
chr1224559115224559169+CDS,intron-Distal,intron-Proximal4.288113.89565K562PRPF8
chr1224544672224544836+CDS,intron-Distal,intron-Proximal4.343634.48994K562RBM15
chr1224558984224559103+CDS,intron-Distal,intron-Proximal3.373826.10740K562SND1
chr1224548196224548269+CDS,intron-Distal,intron-Proximal4.0864914.60876K562DDX3X
chr1224548317224548463+intron-Distal,intron-Proximal3.557863.07751K562KHSRP
chr1224544852224544943+intron-Distal,intron-Proximal3.163083.58507HepG2XPO5
chr1224559152224559252+intron-Distal,intron-Proximal4.001244.07352K562KHSRP
chr1224550063224550133+intron-Distal3.050833.23702K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CNIH4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CNIH4 is not available on ENCORE database.

  • 55 RBPs can affect the levels of CNIH4.  








The Knockdown/knockout RNA-Seq assay for CNIH4 is not available on ENCORE database.





55 RBPs can affect the gene expression of CNIH4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CNIH4ENSG00000143771.71166.03760915.915000.348201.899201.44890HepG2AKAP1
CNIH4ENSG00000143771.7488.03720365.565500.416802.336001.78050HepG2BOP1
CNIH4ENSG00000143771.7698.96500528.526500.403102.949702.15580HepG2CALR
CNIH4ENSG00000143771.7510.16580720.00030-0.497003.394402.54310HepG2CIRBP
CNIH4ENSG00000143771.7421.72620542.61070-0.363602.973602.28880HepG2CKAP4
CNIH4ENSG00000143771.7357.21750519.22660-0.539604.771603.92640HepG2DKC1
CNIH4ENSG00000143771.7335.80910421.67540-0.328502.146501.55860HepG2DNAJC2
CNIH4ENSG00000143771.7315.78800435.79940-0.464702.279501.44100HepG2EEF2
CNIH4ENSG00000143771.7439.88670800.67900-0.864108.174007.07880HepG2EIF4A3
CNIH4ENSG00000143771.7634.02550824.05250-0.378203.777502.82610HepG2EIF4G1
CNIH4ENSG00000143771.7732.97500509.965000.523303.075802.26840HepG2FIP1L1
CNIH4ENSG00000143771.7228.41220394.56020-0.788606.035704.89580HepG2FUBP3
CNIH4ENSG00000143771.7587.64990795.61790-0.437102.880901.96740HepG2G3BP2
CNIH4ENSG00000143771.7306.81180429.46990-0.485202.730402.08820HepG2HNRNPA1
CNIH4ENSG00000143771.7597.23500758.88450-0.345602.028001.42390HepG2HNRNPK
CNIH4ENSG00000143771.7570.90940760.94670-0.414504.735303.87030HepG2HNRNPL
CNIH4ENSG00000143771.7460.51890766.20680-0.734505.255103.83240HepG2KHSRP
CNIH4ENSG00000143771.7516.26160808.16330-0.646505.334504.43090HepG2MAGOH
CNIH4ENSG00000143771.7469.78910812.68170-0.790706.862505.90100HepG2MATR3
CNIH4ENSG00000143771.7590.99320412.609400.518303.549602.63570HepG2MSI2
CNIH4ENSG00000143771.7527.94800831.82100-0.655905.412904.54100HepG2NCBP2
CNIH4ENSG00000143771.7557.97560828.31330-0.570006.687905.50880HepG2NOL12
CNIH4ENSG00000143771.7297.31200464.66580-0.644202.549801.50470HepG2NONO
CNIH4ENSG00000143771.7563.55140740.77290-0.394502.304401.64100HepG2PABPC4
CNIH4ENSG00000143771.7544.48690754.18890-0.470004.195403.47580HepG2PCBP1
CNIH4ENSG00000143771.7539.72660767.46750-0.507905.383204.67340HepG2PTBP1
CNIH4ENSG00000143771.7628.59140790.67910-0.331002.290301.74080HepG2PUF60
CNIH4ENSG00000143771.7661.75660839.31920-0.342903.800203.12900HepG2PUM1
CNIH4ENSG00000143771.7420.33000838.71960-0.9967016.0867014.55220HepG2PUM2
CNIH4ENSG00000143771.7439.82590552.78230-0.329802.483601.89210HepG2PUS1
CNIH4ENSG00000143771.7610.17310831.07530-0.445803.946403.21830HepG2QKI
CNIH4ENSG00000143771.71220.33840692.358100.8176015.2978014.27970HepG2RBM22
CNIH4ENSG00000143771.7615.85140854.07430-0.471804.857104.17590HepG2NELFE
CNIH4ENSG00000143771.7564.50960795.53260-0.494905.254004.43890HepG2RECQL
CNIH4ENSG00000143771.7343.40210569.96720-0.731004.324703.14920HepG2RPS10
CNIH4ENSG00000143771.7415.47950583.48100-0.489903.043502.20470HepG2RPS2
CNIH4ENSG00000143771.7349.24390595.59460-0.770106.514104.87300HepG2RPS5
CNIH4ENSG00000143771.7433.21770798.93940-0.8830014.1093012.93380HepG2SF3B4
CNIH4ENSG00000143771.7603.04680758.09380-0.330103.193802.44870HepG2SLBP
CNIH4ENSG00000143771.7712.08890399.816700.832603.257502.40750HepG2SNRNP70
CNIH4ENSG00000143771.71374.63980781.996200.8137020.0866019.06010HepG2SRFBP1
CNIH4ENSG00000143771.7648.09780833.95780-0.363803.225402.72510HepG2SRSF1
CNIH4ENSG00000143771.7602.83410749.69950-0.314602.295501.77670HepG2TAF15
CNIH4ENSG00000143771.7539.49710688.75960-0.352402.325201.55630HepG2TIA1
CNIH4ENSG00000143771.7625.87820436.171900.520903.090302.42840HepG2U2AF1
CNIH4ENSG00000143771.7445.15120332.623600.420303.105702.40160HepG2ZC3H8
CNIH4ENSG00000143771.7579.132701041.29310-0.8464010.105609.09180K562AQR
CNIH4ENSG00000143771.71115.81710710.497500.6511011.2972010.07780K562DDX47
CNIH4ENSG00000143771.7323.98870456.51940-0.494702.658301.76550K562EFTUD2
CNIH4ENSG00000143771.7341.85880518.67100-0.601404.681203.61450K562EIF4A3
CNIH4ENSG00000143771.7669.91310528.270400.342602.116001.37080K562FIP1L1
CNIH4ENSG00000143771.7483.95710664.20240-0.456703.681802.44080K562HNRNPA1
CNIH4ENSG00000143771.7274.63100408.39410-0.572503.635702.96340K562HNRNPC
CNIH4ENSG00000143771.71329.43360716.179800.8923013.1601011.46730K562HSPD1
CNIH4ENSG00000143771.7629.68570821.60620-0.383803.072902.18590K562MAGOH
CNIH4ENSG00000143771.7777.501601083.37340-0.478604.391602.96880K562MSI2
CNIH4ENSG00000143771.71337.388001044.420000.356602.901601.42700K562PNPT1
CNIH4ENSG00000143771.7850.97620599.735300.504704.243503.19730K562PPIG
CNIH4ENSG00000143771.7643.03420798.22910-0.311902.217701.61290K562PTBP1
CNIH4ENSG00000143771.71560.557801179.759500.403503.955302.65860K562PUM1
CNIH4ENSG00000143771.7908.784401155.72920-0.346803.699202.58680K562PUM2
CNIH4ENSG00000143771.7576.76940765.49960-0.408402.970502.09670K562RBM22
CNIH4ENSG00000143771.7624.26180452.555500.464002.738601.92730K562RPS19
CNIH4ENSG00000143771.7380.89110609.13140-0.677402.563401.74300K562SF3B4
CNIH4ENSG00000143771.7498.64170791.99390-0.667506.390905.27520K562TARDBP
CNIH4ENSG00000143771.7947.853301172.94700-0.307402.190001.43310K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CNIH4 is not available on ENCORE database.





5 RBPs can affect the splicing of CNIH4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECNIH4ENSG00000143771.7chr1+224548196224548265224546699224546759224553580224553693-0.134000.004860.07239excludedK562SF3B4
A5SSCNIH4ENSG00000143771.7chr1+2245446222245453142245446222245447452245535802245536930.587000.002070.03472longerK562AQR
MXECNIH4ENSG00000143771.7chr1+2245535802245536932245589842245591252245481962245482652245634962245671540.110000.000020.000901includedK562DROSHA
MXECNIH4ENSG00000143771.7chr1+2245535802245536932245589842245591252245481962245482652245667702245671540.140000.000170.005111includedK562DROSHA
MXECNIH4ENSG00000143771.7chr1+2245535802245536932245589842245591252245481962245482652245634962245671540.105000.000020.000331includedHepG2U2AF2
MXECNIH4ENSG00000143771.7chr1+2245466612245467592245482182245482652245445722245446952245535802245536930.120000.000010.000721includedHepG2SF3B4
MXECNIH4ENSG00000143771.7chr1+224553580224553693224558984224559125224548196224548265224563496224567154-0.180000.000020.000782includedK562SF3B4
MXECNIH4ENSG00000143771.7chr1+224553580224553693224558984224559125224548196224548265224566770224567154-0.092000.001770.030162includedK562SF3B4
MXECNIH4ENSG00000143771.7chr1+2245535802245536932245589842245591252245481962245482652245634962245671540.077000.001060.024231includedK562HNRNPUL1
MXECNIH4ENSG00000143771.7chr1+2245535802245536932245589842245591252245481962245482652245667702245671540.126000.001310.028181includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CNIH4 is not avaliable on ENCORE database.