C8orf44

General Information

Gene Name       : C8orf44
Gene ID             : ENSG00000213865.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C8orf44)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C8orf44ENSG00000213865.79.886.138.01ENCSR000AEF
HepG2C8orf44ENSG00000213865.72.634.383.50ENCSR985KAT
K562C8orf44ENSG00000213865.717.5815.4416.51ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C8orf44 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C8orf44 RNA is bound by 14 proteins.  







eCLIP assay for C8orf44 is not avaliable on ENCORE database.





14 proteins are bound to C8orf44 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr86758983067589912+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.716816.71722K562SF3B4
chr86758986167589915+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.857187.37475HepG2U2AF2
chr86759280567592882+3'-UTR,intron-Distal3.140153.02792HepG2RBFOX2
chr86759043867590497+3'-UTR,CDS,intron-Distal,intron-Proximal4.145828.64802HepG2U2AF2
chr86757989767579961+5'-UTR,intron-Proximal4.732098.21918K562EFTUD2
chr86757985367579997+5'-UTR,intron-Proximal3.679478.45395HepG2NCBP2
chr86757992067580028+5'-UTR,intron-Proximal3.696889.36784HepG2EFTUD2
chr86759193267592022+5'-UTR,CDS,intron-Proximal4.501797.72109HepG2U2AF2
chr86759430667594417+intron-Distal3.705128.21547K562ILF3
chr86759061567590636+intron-Distal4.044373.88068HepG2CSTF2
chr86759053967590615+intron-Distal5.4318212.20377HepG2CSTF2
chr86759053767590629+intron-Distal4.213687.11359K562CSTF2T
chr86758136867581470+intron-Distal4.250067.97776K562TARDBP
chr86759063667590732+intron-Distal4.557605.65087HepG2CSTF2
chr86759430867594372+intron-Distal4.232793.71997HepG2ILF3
chr86757995367580043+intron-Distal,intron-Proximal5.101976.98483K562RBM22
chr86759430067594363+intron-Distal4.253264.58231HepG2HNRNPK
chr86757996167580040+intron-Distal,intron-Proximal6.2370910.71181K562EFTUD2
chr86758415167584207+intron-Distal3.897973.04956HepG2HNRNPL
chr86758131467581462+intron-Distal3.876506.94650K562EIF4G2
chr86759077967590846+intron-Distal4.210314.84037HepG2CSTF2
chr86757995867580064+intron-Distal,intron-Proximal3.833995.31870HepG2RBM22
chr86759430267594434+intron-Distal5.3474917.11308HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C8orf44 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C8orf44 is not available on ENCORE database.

  • 51 RBPs can affect the levels of C8orf44.  








The Knockdown/knockout RNA-Seq assay for C8orf44 is not available on ENCORE database.





51 RBPs can affect the gene expression of C8orf44 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C8orf44ENSG00000213865.352.9985090.38470-0.770102.338301.77150HepG2ACO1
C8orf44ENSG00000213865.3100.5009056.261800.836902.283101.56680HepG2ASCC1
C8orf44ENSG00000213865.3116.4021067.564400.784702.520901.87080HepG2DDX21
C8orf44ENSG00000213865.3100.6743054.614800.882202.830901.83850HepG2DHX30
C8orf44ENSG00000213865.3182.7034053.785201.7641010.805409.68190HepG2EIF2S1
C8orf44ENSG00000213865.367.57230119.13640-0.818102.301601.59610HepG2FIP1L1
C8orf44ENSG00000213865.389.5689045.794700.967701.995001.31890HepG2FUBP3
C8orf44ENSG00000213865.3118.8008055.635001.094404.025403.23100HepG2G3BP1
C8orf44ENSG00000213865.3182.28200112.043300.702003.464902.71880HepG2HNRNPL
C8orf44ENSG00000213865.3145.4232060.395001.267705.531904.67330HepG2HNRNPLL
C8orf44ENSG00000213865.3107.2803056.886200.915102.512801.56810HepG2KHSRP
C8orf44ENSG00000213865.3115.6693060.343200.938602.772402.14060HepG2MATR3
C8orf44ENSG00000213865.388.9973048.083400.888102.409601.65430HepG2PRPF8
C8orf44ENSG00000213865.3116.7076071.601500.704702.074101.52180HepG2QKI
C8orf44ENSG00000213865.375.62350129.50700-0.776102.849602.32540HepG2RBM22
C8orf44ENSG00000213865.369.14870122.21410-0.821602.666502.00510HepG2SF3A3
C8orf44ENSG00000213865.369.51260114.93160-0.725402.498101.89890HepG2SRSF5
C8orf44ENSG00000213865.373.09980130.71660-0.838503.441702.76220HepG2SUCLG1
C8orf44ENSG00000213865.3117.0197064.568700.857702.947602.37100HepG2TAF15
C8orf44ENSG00000213865.3113.2592061.383200.883603.111402.58650HepG2TIAL1
C8orf44ENSG00000213865.356.39900101.90380-0.853502.523601.92130HepG2U2AF1
C8orf44ENSG00000213865.347.99800104.64180-1.124404.327703.60540HepG2UTP3
C8orf44ENSG00000213865.379.51620119.20300-0.584101.959501.47760HepG2ZNF622
C8orf44ENSG00000213865.3137.29770291.05570-1.084009.085808.13340K562AGGF1
C8orf44ENSG00000213865.3176.56330302.85130-0.778405.070604.17490K562AKAP8L
C8orf44ENSG00000213865.3157.82750269.48530-0.771903.633402.18870K562APOBEC3C
C8orf44ENSG00000213865.395.25120241.01720-1.339307.728906.82940K562AQR
C8orf44ENSG00000213865.3228.68610317.75380-0.474502.819201.89700K562ATP5C1
C8orf44ENSG00000213865.3102.48010161.33860-0.654702.224301.44840K562BOP1
C8orf44ENSG00000213865.3254.17890347.84490-0.452602.592001.46230K562CCDC124
C8orf44ENSG00000213865.3273.23040375.48810-0.458602.315301.42320K562CELF1
C8orf44ENSG00000213865.3136.98210274.76500-1.004208.349907.29910K562DDX47
C8orf44ENSG00000213865.3244.67270325.92320-0.413702.315501.52370K562DKC1
C8orf44ENSG00000213865.363.08580116.74720-0.888003.304902.43820K562EIF3G
C8orf44ENSG00000213865.380.37690127.98680-0.671102.329701.76620K562FXR1
C8orf44ENSG00000213865.3107.25300163.81020-0.611002.157601.45390K562GPKOW
C8orf44ENSG00000213865.3350.53560248.318400.497302.894101.81080K562HNRNPL
C8orf44ENSG00000213865.3215.99030321.41960-0.573503.131302.24990K562KIF1C
C8orf44ENSG00000213865.3199.45810307.66250-0.625302.994101.86540K562MAK16
C8orf44ENSG00000213865.366.48070112.92650-0.764402.038301.39020K562PRPF8
C8orf44ENSG00000213865.3216.68930333.22030-0.620803.489602.57560K562PUF60
C8orf44ENSG00000213865.3133.95540300.38360-1.165108.355407.45960K562PUS1
C8orf44ENSG00000213865.3177.11110292.64690-0.724504.748003.99110K562RBM15
C8orf44ENSG00000213865.383.30780156.65890-0.911103.144502.24270K562RBM22
C8orf44ENSG00000213865.357.26010115.04720-1.006603.065602.20490K562RPS19
C8orf44ENSG00000213865.360.88280115.48320-0.923602.642401.34600K562RRP9
C8orf44ENSG00000213865.363.58680118.22610-0.894703.032201.89970K562SAFB
C8orf44ENSG00000213865.3105.12790230.30710-1.131403.591402.16090K562SF1
C8orf44ENSG00000213865.379.30560138.33140-0.802603.023702.12930K562SF3B4
C8orf44ENSG00000213865.391.46860160.28320-0.809302.680501.98320K562SRSF1
C8orf44ENSG00000213865.385.56620133.15130-0.638002.045601.35590K562U2AF2
C8orf44ENSG00000213865.3182.12250304.51900-0.741602.706801.43360K562UTP18
C8orf44ENSG00000213865.3125.31290187.02260-0.577702.561801.74450K562WDR43
C8orf44ENSG00000213865.3180.31840271.49170-0.590403.140402.21420K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C8orf44 is not available on ENCORE database.





7 RBPs can affect the splicing of C8orf44 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC8orf44ENSG00000213865.3chr8+675889796758913767579886675799366758987667590189-0.366000.000170.00482excludedK562SRSF1
SEC8orf44ENSG00000213865.3chr8+6758897967589137675798866757993667589876675901890.371000.000080.00885includedHepG2HNRNPL
SEC8orf44ENSG00000213865.3chr8+675898766759018967579852675799366759195567593393-0.581000.000190.03849excludedHepG2RBM15
SEC8orf44ENSG00000213865.3chr8+675889796758913767579886675799366758987667590189-0.299000.001620.03752excludedHepG2SRSF1
SEC8orf44ENSG00000213865.3chr8+6758897967589137675798866757993667589876675901890.336000.000940.08320includedHepG2TAF15
SEC8orf44ENSG00000213865.3chr8+675889796758913767579886675799366758987667590189-0.372000.000000.00008excludedK562HNRNPU
SEC8orf44ENSG00000213865.3chr8+675889796758913767579886675799366758987667590189-0.361000.000000.00027excludedK562HNRNPK
SEC8orf44ENSG00000213865.3chr8+6758897967589137675798866757993667589876675901890.481000.000950.05846includedHepG2SRSF9

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C8orf44 is not avaliable on ENCORE database.