C1orf123

General Information

Gene Name       : C1orf123
Gene ID             : ENSG00000162384.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C1orf123)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C1orf123ENSG00000162384.1327.5129.4928.50ENCSR000AEF
HepG2C1orf123ENSG00000162384.1331.0839.4435.26ENCSR985KAT
K562C1orf123ENSG00000162384.1347.3353.7950.56ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C1orf123 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C1orf123 RNA is bound by 9 proteins.  







eCLIP assay for C1orf123 is not avaliable on ENCORE database.





9 proteins are bound to C1orf123 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr15368026053680281-3'-UTR,intron-Distal3.434015.11155K562YBX3
chr15368615153686250-5'-UTR,CDS,intron-Distal4.551784.78731HepG2NCBP2
chr15368615753686253-5'-UTR,CDS,intron-Distal4.067656.93029HepG2GTF2F1
chr15368588453685951-CDS,intron-Distal,intron-Proximal4.9114121.15632HepG2PRPF8
chr15368614853686248-CDS,intron-Distal3.134115.17283K562GTF2F1
chr15368409453684172-CDS,intron-Distal,intron-Proximal4.859955.27053HepG2PPIG
chr15368248053682537-CDS,intron-Distal,intron-Proximal3.752115.14848K562ZNF622
chr15368244953682536-CDS,intron-Distal,intron-Proximal4.269307.79455HepG2PPIG
chr15368588453685966-CDS,intron-Distal,intron-Proximal3.408084.64824K562PRPF8
chr15368245353682532-CDS,intron-Distal,intron-Proximal3.615265.45876HepG2BCLAF1
chr15368589753685927-intron-Distal,intron-Proximal4.672065.97994K562AQR
chr15368589053685897-intron-Distal,intron-Proximal5.672066.75320K562AQR
chr15368592753685932-intron-Distal,intron-Proximal4.549855.47926K562AQR
chr15368603653686105-intron-Distal,intron-Proximal4.160294.36329HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C1orf123 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C1orf123 is not available on ENCORE database.

  • 58 RBPs can affect the levels of C1orf123.  








The Knockdown/knockout RNA-Seq assay for C1orf123 is not available on ENCORE database.





58 RBPs can affect the gene expression of C1orf123 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C1orf123ENSG00000162384.9558.11110749.69820-0.425802.258201.77300HepG2AKAP1
C1orf123ENSG00000162384.9564.23720711.02290-0.333602.768402.08320HepG2AUH
C1orf123ENSG00000162384.9503.07680358.346700.489303.097502.46860HepG2BOP1
C1orf123ENSG00000162384.9355.08050439.73790-0.308501.980501.40600HepG2CKAP4
C1orf123ENSG00000162384.9513.83800718.16220-0.483003.092902.43610HepG2DDX3X
C1orf123ENSG00000162384.9227.09470419.01120-0.883705.927404.84810HepG2DDX55
C1orf123ENSG00000162384.9462.34010638.11330-0.464902.177601.56530HepG2EIF4B
C1orf123ENSG00000162384.9299.34350474.89680-0.665803.733702.44130HepG2FUS
C1orf123ENSG00000162384.9461.45360661.25070-0.519003.426402.66160HepG2FXR1
C1orf123ENSG00000162384.9518.02120680.74360-0.394103.056702.08000HepG2HNRNPA2B1
C1orf123ENSG00000162384.9478.21140674.61250-0.496405.235104.33260HepG2HNRNPL
C1orf123ENSG00000162384.9222.11180396.48140-0.836008.780407.74600HepG2HNRNPU
C1orf123ENSG00000162384.9424.60760623.53450-0.554303.742602.96800HepG2IGF2BP2
C1orf123ENSG00000162384.9399.73830661.48150-0.726606.013105.05650HepG2MAGOH
C1orf123ENSG00000162384.9418.50400665.18810-0.668504.734303.92650HepG2MATR3
C1orf123ENSG00000162384.9221.34900384.77730-0.797703.590502.33440HepG2NONO
C1orf123ENSG00000162384.9308.08850467.39650-0.601302.597901.74470HepG2PABPC1
C1orf123ENSG00000162384.9367.93860655.45110-0.8330012.3105011.17770HepG2PCBP1
C1orf123ENSG00000162384.9372.17470666.92810-0.8416012.0245011.04310HepG2PTBP1
C1orf123ENSG00000162384.9526.65930744.31680-0.499005.034604.28250HepG2PUM1
C1orf123ENSG00000162384.9520.69570722.33770-0.472204.272103.52030HepG2QKI
C1orf123ENSG00000162384.9232.59340433.88560-0.899504.591703.69600HepG2RAVER1
C1orf123ENSG00000162384.9559.68650682.31660-0.285801.813301.37060HepG2RBM22
C1orf123ENSG00000162384.9430.86950655.55350-0.605505.632904.70340HepG2RBM25
C1orf123ENSG00000162384.9588.83000742.24180-0.334002.680102.14570HepG2NELFE
C1orf123ENSG00000162384.9532.04130691.27040-0.377703.269802.60710HepG2RECQL
C1orf123ENSG00000162384.9197.16700319.72680-0.697403.519002.64630HepG2RRP9
C1orf123ENSG00000162384.9313.58880518.76220-0.726204.661003.77250HepG2SF3A3
C1orf123ENSG00000162384.9225.97770352.25110-0.640403.655202.85320HepG2SF3B1
C1orf123ENSG00000162384.9363.02160694.39030-0.9357014.5846013.39100HepG2SF3B4
C1orf123ENSG00000162384.9408.03030770.65180-0.9174015.7384014.80070HepG2SRFBP1
C1orf123ENSG00000162384.9500.63840724.78000-0.533805.904905.27920HepG2SRSF1
C1orf123ENSG00000162384.9528.04030692.31170-0.390802.679302.06040HepG2SRSF5
C1orf123ENSG00000162384.9473.52490589.63590-0.316402.465901.93800HepG2SRSF9
C1orf123ENSG00000162384.9574.69940787.29490-0.454104.222703.48370HepG2SUCLG1
C1orf123ENSG00000162384.9492.04960685.04550-0.477403.498802.50420HepG2TUFM
C1orf123ENSG00000162384.9288.49200463.81740-0.685003.745403.01740HepG2U2AF1
C1orf123ENSG00000162384.9526.80030725.16670-0.461102.304601.54610HepG2UBE2L3
C1orf123ENSG00000162384.9293.53990444.17320-0.597605.192304.41530HepG2UTP3
C1orf123ENSG00000162384.9775.61230994.60240-0.358803.662803.02630K562AGGF1
C1orf123ENSG00000162384.91501.073301173.464000.355103.633702.18870K562APOBEC3C
C1orf123ENSG00000162384.9726.042801006.04130-0.470602.230601.69450K562AQR
C1orf123ENSG00000162384.9623.42740771.73710-0.307902.005801.32940K562CPSF6
C1orf123ENSG00000162384.9283.77170576.27820-1.0220011.057409.10080K562EFTUD2
C1orf123ENSG00000162384.91103.59250802.589500.459404.074903.03210K562FIP1L1
C1orf123ENSG00000162384.9560.96020789.81700-0.493605.263504.01640K562HNRNPU
C1orf123ENSG00000162384.91743.840401088.112400.680308.885607.47410K562HSPD1
C1orf123ENSG00000162384.9885.077701098.33580-0.311402.423001.65710K562KIF1C
C1orf123ENSG00000162384.9643.45390862.42610-0.422602.219501.44990K562NAA15
C1orf123ENSG00000162384.9373.69590610.88430-0.709005.432304.05120K562PCBP2
C1orf123ENSG00000162384.9538.35410691.34270-0.360802.559401.79170K562POLR2G
C1orf123ENSG00000162384.91146.66210911.127300.331602.295701.54930K562PPIG
C1orf123ENSG00000162384.9381.94850560.78450-0.554103.607802.75040K562PRPF8
C1orf123ENSG00000162384.9694.002901026.40990-0.564605.263904.54580K562PUS1
C1orf123ENSG00000162384.9622.914201000.03910-0.683009.680708.59690K562RBM15
C1orf123ENSG00000162384.9644.13600783.57100-0.282702.117001.39700K562SF3A3
C1orf123ENSG00000162384.9498.17230700.74260-0.492203.021802.00420K562SF3B1
C1orf123ENSG00000162384.9649.00580802.78430-0.306802.807401.86650K562SRPK2
C1orf123ENSG00000162384.9860.96740693.431200.312102.296401.54760K562SYNCRIP
C1orf123ENSG00000162384.9407.81360661.77670-0.698406.402405.28550K562TARDBP
C1orf123ENSG00000162384.9428.83620574.67350-0.422302.420301.47420K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C1orf123 is not available on ENCORE database.





12 RBPs can affect the splicing of C1orf123 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC1orf123ENSG00000162384.9chr1-5368453853684595536840855368416753685932536860160.080000.000350.03569includedHepG2G3BP1
SEC1orf123ENSG00000162384.9chr1-536845385368459553684085536841675368593253686016-0.175000.000010.00038excludedK562SF3B4
SEC1orf123ENSG00000162384.9chr1-536845385368459553684085536841675368593253686016-0.194000.000000.00000excludedK562SUPV3L1
SEC1orf123ENSG00000162384.9chr1-536845385368459553684085536841675368593253686016-0.171000.000000.00000excludedK562PUS1
SEC1orf123ENSG00000162384.9chr1-536845385368459553684085536841675368593253686016-0.096000.000050.01440excludedK562NSUN2
SEC1orf123ENSG00000162384.9chr1-536845385368459553684085536841675368593253686016-0.128000.000040.00422excludedK562EFTUD2
SEC1orf123ENSG00000162384.9chr1-536845385368459553684085536841675368593253686016-0.057000.003820.06633excludedK562U2AF1
SEC1orf123ENSG00000162384.9chr1-536859325368601653684538536845955368624153686289-0.111000.001710.03086excludedK562U2AF2
SEC1orf123ENSG00000162384.9chr1-536845385368459553684085536841675368593253686016-0.135000.000040.00289excludedK562TARDBP
SEC1orf123ENSG00000162384.9chr1-536845385368459553684085536841675368593253686016-0.076000.000240.00896excludedK562RBM15
SEC1orf123ENSG00000162384.9chr1-536845385368459553684085536841675368593253686016-0.109000.003050.09289excludedK562SF3B1
SEC1orf123ENSG00000162384.9chr1-536845385368459553684085536841675368593253686016-0.085000.000450.09064excludedK562SERBP1
MXEC1orf123ENSG00000162384.9chr1-53684538536845955368593253686016536840855368416753686241536862890.198000.001450.032341includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C1orf123 is not avaliable on ENCORE database.