C1GALT1C1

General Information

Gene Name       : C1GALT1C1
Gene ID             : ENSG00000171155.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C1GALT1C1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C1GALT1C1ENSG00000171155.716.2214.3615.29ENCSR000AEF
HepG2C1GALT1C1ENSG00000171155.714.2025.0019.60ENCSR985KAT
K562C1GALT1C1ENSG00000171155.710.1311.5310.83ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C1GALT1C1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C1GALT1C1 RNA is bound by 1 proteins.  







eCLIP assay for C1GALT1C1 is not avaliable on ENCORE database.





1 proteins are bound to C1GALT1C1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX119760563119760609-CDS,intron-Distal3.596944.95361HepG2SND1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C1GALT1C1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C1GALT1C1 is not available on ENCORE database.

  • 55 RBPs can affect the levels of C1GALT1C1.  








The Knockdown/knockout RNA-Seq assay for C1GALT1C1 is not available on ENCORE database.





55 RBPs can affect the gene expression of C1GALT1C1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C1GALT1C1ENSG00000171155.71517.45080782.521500.9553011.2932010.28830HepG2AKAP1
C1GALT1C1ENSG00000171155.7486.84650645.70940-0.407401.805001.31230HepG2BOP1
C1GALT1C1ENSG00000171155.7908.58700571.581300.668607.906906.69950HepG2CALR
C1GALT1C1ENSG00000171155.7437.67860592.82060-0.437701.920601.33660HepG2CPSF6
C1GALT1C1ENSG00000171155.7934.31220684.996300.447705.254204.42090HepG2CELF1
C1GALT1C1ENSG00000171155.7301.96380412.32960-0.449403.611102.67480HepG2DDX19B
C1GALT1C1ENSG00000171155.71055.26000749.633300.493203.724303.00890HepG2DDX3X
C1GALT1C1ENSG00000171155.7501.99350684.16250-0.446702.506801.89720HepG2EIF4A3
C1GALT1C1ENSG00000171155.7481.61880666.04850-0.467702.219001.59940HepG2EIF4B
C1GALT1C1ENSG00000171155.7578.06980726.63570-0.330002.587001.77330HepG2EIF4G1
C1GALT1C1ENSG00000171155.7534.46210690.16500-0.368902.016001.42200HepG2FXR1
C1GALT1C1ENSG00000171155.7194.67420300.17490-0.624703.448302.43580HepG2GEMIN5
C1GALT1C1ENSG00000171155.7309.70380445.97700-0.526103.323702.62330HepG2HNRNPA1
C1GALT1C1ENSG00000171155.7825.39080676.881500.286102.441201.55550HepG2HNRNPA2B1
C1GALT1C1ENSG00000171155.7933.58350641.367300.541504.521603.73600HepG2HNRNPLL
C1GALT1C1ENSG00000171155.7623.25460503.374300.308102.745702.01550HepG2ILF2
C1GALT1C1ENSG00000171155.7974.37490736.787000.403102.212601.47690HepG2LARP4
C1GALT1C1ENSG00000171155.7485.15100690.40540-0.509003.378102.65260HepG2MAGOH
C1GALT1C1ENSG00000171155.7636.32850443.445600.520904.524503.50840HepG2MSI2
C1GALT1C1ENSG00000171155.7583.34590730.30970-0.324202.307601.61120HepG2NOL12
C1GALT1C1ENSG00000171155.7650.51670487.771300.415303.732202.76550HepG2PARN
C1GALT1C1ENSG00000171155.7251.11630439.53400-0.807608.343007.11070HepG2PPIL4
C1GALT1C1ENSG00000171155.7480.78860657.32020-0.451204.330903.67950HepG2PTBP1
C1GALT1C1ENSG00000171155.7541.44120711.85520-0.394803.040002.39070HepG2QKI
C1GALT1C1ENSG00000171155.7444.85780731.51910-0.717609.181208.29930HepG2NELFE
C1GALT1C1ENSG00000171155.7520.21090681.33810-0.389303.261102.59910HepG2RECQL
C1GALT1C1ENSG00000171155.7315.71310535.77260-0.763006.609405.61820HepG2RPLP0
C1GALT1C1ENSG00000171155.7214.76270328.03570-0.611103.594602.90330HepG2RPS19
C1GALT1C1ENSG00000171155.7455.27190341.901300.413001.999101.32040HepG2RRP9
C1GALT1C1ENSG00000171155.7345.38180438.85140-0.345502.256801.66500HepG2SAFB2
C1GALT1C1ENSG00000171155.7397.60870982.83460-1.305604.764802.88570HepG2SF1
C1GALT1C1ENSG00000171155.7496.42550684.32250-0.463104.341203.62560HepG2SF3B4
C1GALT1C1ENSG00000171155.7546.49080714.29790-0.386303.374302.86540HepG2SRSF1
C1GALT1C1ENSG00000171155.7723.28470581.130900.315602.761402.21020HepG2SRSF9
C1GALT1C1ENSG00000171155.7507.77790663.55840-0.386002.937802.41330HepG2SSB
C1GALT1C1ENSG00000171155.7774.87930445.951400.797006.925405.93110HepG2SUPV3L1
C1GALT1C1ENSG00000171155.7508.82800642.07580-0.335602.354601.83030HepG2TAF15
C1GALT1C1ENSG00000171155.7419.34280298.916800.488302.770601.77420HepG2TFIP11
C1GALT1C1ENSG00000171155.7285.58250478.80380-0.745507.071406.33900HepG2TIAL1
C1GALT1C1ENSG00000171155.7583.03600391.399700.574805.120404.21610HepG2UPF1
C1GALT1C1ENSG00000171155.7573.77000402.324000.512003.928802.70150HepG2UTP18
C1GALT1C1ENSG00000171155.7274.07120377.88510-0.463402.628302.04330HepG2UTP3
C1GALT1C1ENSG00000171155.7292.21930438.98970-0.587103.072402.30920HepG2XRN2
C1GALT1C1ENSG00000171155.7482.98830341.154300.501504.372103.55850HepG2ZC3H8
C1GALT1C1ENSG00000171155.7799.44690430.468400.8930018.2353017.13590HepG2ZNF622
C1GALT1C1ENSG00000171155.7238.26400344.19170-0.530702.509501.94440K562AQR
C1GALT1C1ENSG00000171155.7183.24110283.71510-0.630703.599802.70620K562CPSF6
C1GALT1C1ENSG00000171155.7167.67830290.36380-0.792203.412902.69980K562DDX47
C1GALT1C1ENSG00000171155.732.7612086.04750-1.393102.328801.41390K562EIF3A
C1GALT1C1ENSG00000171155.7104.85480187.07100-0.835204.542403.53380K562EIF3G
C1GALT1C1ENSG00000171155.7227.91100157.182300.535902.018201.42710K562G3BP2
C1GALT1C1ENSG00000171155.7136.13490206.66600-0.602302.512701.58190K562PCBP2
C1GALT1C1ENSG00000171155.7159.89600298.35070-0.899902.980601.45200K562PPP1R8
C1GALT1C1ENSG00000171155.764.25290150.35560-1.226505.142104.02610K562RPS19
C1GALT1C1ENSG00000171155.7151.25690279.84940-0.887603.037301.64160K562SFPQ
C1GALT1C1ENSG00000171155.7217.75520149.095300.546402.445601.67500K562SYNCRIP
C1GALT1C1ENSG00000171155.7135.41740210.65370-0.637503.510902.56550K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C1GALT1C1 is not available on ENCORE database.





1 RBPs can affect the splicing of C1GALT1C1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC1GALT1C1ENSG00000171155.7chrX-1197611101197612821197597851197610261197637711197638500.070000.000190.05386includedK562PUM1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C1GALT1C1 is not avaliable on ENCORE database.