C17orf80

General Information

Gene Name       : C17orf80
Gene ID             : ENSG00000141219.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C17orf80)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C17orf80ENSG00000141219.1515.5114.2114.86ENCSR000AEF
HepG2C17orf80ENSG00000141219.1518.3626.8322.59ENCSR985KAT
K562C17orf80ENSG00000141219.1516.3118.6417.48ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C17orf80 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C17orf80 RNA is bound by 7 proteins.  







eCLIP assay for C17orf80 is not avaliable on ENCORE database.





7 proteins are bound to C17orf80 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177124502371245079+3'-UTR3.854773.10834HepG2CSTF2
chr177122942171229463+5'-UTR4.422593.89826HepG2BCLAF1
chr177122928471229435+5'-UTR,intron-Proximal3.171314.20336HepG2AQR
chr177122911171229214+5'-UTR,intron-Distal4.886686.57216HepG2PRPF4
chr177123303071233132+CDS,intron-Distal3.728283.12746HepG2GRWD1
chr177123292071233065+CDS,intron-Distal3.331664.70209K562YBX3
chr177123908171239178+CDS,intron-Proximal4.878235.05356HepG2PRPF8
chr177123219671232291+CDS,intron-Distal4.228306.84316HepG2BCLAF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C17orf80 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C17orf80 is not available on ENCORE database.

  • 61 RBPs can affect the levels of C17orf80.  








The Knockdown/knockout RNA-Seq assay for C17orf80 is not available on ENCORE database.





61 RBPs can affect the gene expression of C17orf80 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C17orf80ENSG00000141219.11465.88100699.79420-0.587004.064802.99430HepG2BCLAF1
C17orf80ENSG00000141219.11577.09100809.92650-0.489003.629502.85250HepG2CPSF6
C17orf80ENSG00000141219.11604.19160720.81960-0.254602.146701.55870HepG2DNAJC2
C17orf80ENSG00000141219.111371.171001146.857500.257602.598801.78360HepG2EIF4G1
C17orf80ENSG00000141219.112035.602501502.221500.438307.939907.01150HepG2ETF1
C17orf80ENSG00000141219.11395.52540524.13710-0.406202.371801.55000HepG2GEMIN5
C17orf80ENSG00000141219.11670.04520997.28030-0.573702.314801.67250HepG2HNRNPK
C17orf80ENSG00000141219.11754.56790927.54840-0.297802.178201.53150HepG2IGF2BP1
C17orf80ENSG00000141219.11659.08210828.67150-0.330303.701502.86530HepG2ILF2
C17orf80ENSG00000141219.11512.03190799.81250-0.643403.498502.22280HepG2LARP7
C17orf80ENSG00000141219.11710.960701068.49030-0.587702.238401.66720HepG2MATR3
C17orf80ENSG00000141219.11532.21120822.74830-0.628503.220902.25860HepG2PABPC1
C17orf80ENSG00000141219.11550.74680723.57570-0.393803.479102.66240HepG2PPIL4
C17orf80ENSG00000141219.11913.24920726.787900.329403.201202.37490HepG2PRPF4
C17orf80ENSG00000141219.11550.40130842.63370-0.614403.014602.28130HepG2RAVER1
C17orf80ENSG00000141219.11587.46270722.45710-0.298402.529101.90880HepG2SAFB2
C17orf80ENSG00000141219.11830.61650978.43550-0.236301.893301.38860HepG2SF3B4
C17orf80ENSG00000141219.111280.31940964.977100.407801.956501.30330HepG2SNRNP70
C17orf80ENSG00000141219.111429.130501021.268200.484707.729807.03180HepG2SRSF1
C17orf80ENSG00000141219.11579.88340795.33630-0.455805.292404.56370HepG2TRIM56
C17orf80ENSG00000141219.11988.24090777.997100.345002.102601.54680HepG2U2AF1
C17orf80ENSG00000141219.11845.02600717.228600.236501.989801.40620HepG2ZC3H8
C17orf80ENSG00000141219.11823.166701029.11080-0.322103.886203.26750HepG2ZNF622
C17orf80ENSG00000141219.11293.98050795.02850-1.4353026.3036024.66330K562AGGF1
C17orf80ENSG00000141219.11620.76440873.56040-0.492904.442803.12750K562AKAP8
C17orf80ENSG00000141219.11416.60400827.24950-0.9896013.7522012.12710K562AKAP8L
C17orf80ENSG00000141219.11948.207001245.38410-0.393302.570902.00030K562AQR
C17orf80ENSG00000141219.11620.14950867.95790-0.485005.363404.04280K562ATP5C1
C17orf80ENSG00000141219.11552.85180708.11790-0.357103.146102.12580K562BCLAF1
C17orf80ENSG00000141219.111661.774301071.623100.6328013.4807012.15180K562DDX47
C17orf80ENSG00000141219.11850.60670626.080100.442002.634401.85600K562EIF3G
C17orf80ENSG00000141219.111798.125401547.585200.216402.459201.56900K562EIF4G2
C17orf80ENSG00000141219.11667.22170883.24620-0.404603.042202.15110K562FIP1L1
C17orf80ENSG00000141219.11857.14210461.682300.8925015.1672013.86220K562FXR1
C17orf80ENSG00000141219.11471.76570634.25080-0.427003.121801.57610K562G3BP1
C17orf80ENSG00000141219.111078.962901311.70900-0.281801.964101.32130K562GRSF1
C17orf80ENSG00000141219.11431.63050673.45680-0.641802.711601.50990K562HNRNPA2B1
C17orf80ENSG00000141219.11440.15640663.25460-0.591503.913802.60690K562IGF2BP2
C17orf80ENSG00000141219.11520.43620877.96660-0.754406.547905.15370K562KIF1C
C17orf80ENSG00000141219.11388.96540582.37110-0.582303.412201.82770K562LARP7
C17orf80ENSG00000141219.11563.18560840.39100-0.577505.058103.46110K562MAK16
C17orf80ENSG00000141219.11709.90100983.53760-0.470403.227402.23200K562MBNL1
C17orf80ENSG00000141219.11450.87710642.01940-0.509904.133003.04900K562METAP2
C17orf80ENSG00000141219.11390.04490689.38440-0.821706.166704.65150K562NAA15
C17orf80ENSG00000141219.11327.34770525.14200-0.681903.309601.30410K562PABPC4
C17orf80ENSG00000141219.11272.95250588.96950-1.109506.165704.51400K562PABPN1
C17orf80ENSG00000141219.11748.69910569.592300.394403.209802.34260K562POLR2G
C17orf80ENSG00000141219.11766.620001002.61900-0.387202.903402.06020K562PPIG
C17orf80ENSG00000141219.11354.41720539.58130-0.606403.211502.22500K562PSIP1
C17orf80ENSG00000141219.11887.75190677.377500.390103.346102.62360K562PTBP1
C17orf80ENSG00000141219.112037.245701688.586800.270702.423201.66150K562PUF60
C17orf80ENSG00000141219.11335.51630820.50280-1.2901019.8150018.38910K562PUS1
C17orf80ENSG00000141219.11364.73130799.37490-1.1320020.0668018.42950K562RBM15
C17orf80ENSG00000141219.11510.93950649.61260-0.346402.129901.39640K562RBM22
C17orf80ENSG00000141219.11829.72600604.751700.456203.020202.16670K562RPS19
C17orf80ENSG00000141219.11535.24860341.122800.649804.160602.90460K562RPS3
C17orf80ENSG00000141219.11743.29410524.716300.502303.950002.19790K562SDAD1
C17orf80ENSG00000141219.11287.98730538.56170-0.903103.852502.36420K562SF1
C17orf80ENSG00000141219.11374.78920618.60780-0.722902.953101.67120K562SNRNP200
C17orf80ENSG00000141219.11870.67660571.315200.607807.120405.78640K562SYNCRIP
C17orf80ENSG00000141219.11534.16920672.08850-0.331401.903701.30940K562TARDBP
C17orf80ENSG00000141219.11390.67120551.15910-0.496502.613201.69960K562TRIM56
C17orf80ENSG00000141219.11327.56860481.60420-0.556102.486301.45860K562U2AF1
C17orf80ENSG00000141219.11340.06870497.19670-0.548002.583901.80630K562U2AF2
C17orf80ENSG00000141219.111116.68840848.704900.395805.334204.19630K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C17orf80 is not available on ENCORE database.





3 RBPs can affect the splicing of C17orf80 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC17orf80ENSG00000141219.11chr17+7123838271238490712316147123313471239034712391420.247000.000750.05809includedK562SUPV3L1
SEC17orf80ENSG00000141219.11chr17+712316147123313471229358712294647123838271238490-0.149000.003000.09469excludedHepG2MATR3
A3SSC17orf80ENSG00000141219.11chr17+7124334971243594712433797124359471239034712391420.089000.002800.01734longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C17orf80 is not avaliable on ENCORE database.