B9D1

General Information

Gene Name       : B9D1
Gene ID             : ENSG00000108641.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: B9D1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878B9D1ENSG00000108641.153.125.924.52ENCSR000AEF
HepG2B9D1ENSG00000108641.1534.7319.0326.88ENCSR985KAT
K562B9D1ENSG00000108641.1510.3512.6811.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for B9D1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • B9D1 RNA is bound by 5 proteins.  







eCLIP assay for B9D1 is not avaliable on ENCORE database.





5 proteins are bound to B9D1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr171926363219263697-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.374733.22545HepG2PPIG
chr171926113819261226-CDS,intron-Distal,intron-Proximal4.247108.09084HepG2PPIG
chr171926094319261006-CDS,intron-Distal,intron-Proximal3.870706.14899HepG2PCBP2
chr171924995819250005-intron-Distal4.874807.08501HepG2DGCR8
chr171924788819247986-intron-Distal5.027468.06426HepG2NKRF
chr171924819719248238-intron-Distal4.759326.58723HepG2DGCR8
chr171924822519248378-intron-Distal4.9461612.08402HepG2DROSHA
chr171924798119248017-intron-Distal4.850206.86085HepG2DGCR8
chr171924744419247514-intron-Distal5.5388912.86946HepG2DGCR8
chr171924812019248182-intron-Distal3.9894911.08708HepG2DGCR8
chr171924761519247708-intron-Distal6.2674919.48262HepG2DGCR8
chr171925002819250123-intron-Distal5.041234.38825K562DROSHA
chr171924815119248178-intron-Distal4.387144.19577K562DGCR8
chr171924789119247957-intron-Distal5.403427.92291K562DGCR8
chr171924938719249450-intron-Distal4.325333.14880HepG2DROSHA
chr171924788019248003-intron-Distal4.8368523.26145HepG2DROSHA
chr171924724719247283-intron-Distal,intron-Proximal3.890953.14880HepG2DROSHA
chr171924786919247882-intron-Distal4.966845.24066HepG2DGCR8
chr171924825319248290-intron-Distal4.779096.57447HepG2DGCR8
chr171924782319247839-intron-Distal6.8572523.02319HepG2DGCR8
chr171924770819247770-intron-Distal6.1781916.81710HepG2DGCR8
chr171924994019249998-intron-Distal4.589145.60212HepG2DROSHA
chr171924903719249080-intron-Distal3.114683.75965HepG2DROSHA
chr171924831919248371-intron-Distal3.061933.01293HepG2NKRF
chr171924783919247864-intron-Distal7.1367727.42832HepG2DGCR8
chr171924760919247698-intron-Distal4.023424.26550HepG2DROSHA
chr171924786119247880-intron-Distal4.282843.69589K562DGCR8
chr171924782519247860-intron-Distal6.9320928.76486K562DGCR8
chr171924789119247992-intron-Distal3.922715.35939K562DROSHA
chr171924830419248358-intron-Distal5.7492314.12035HepG2DGCR8
chr171924789619247974-intron-Distal7.0417136.60403HepG2DGCR8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for B9D1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for B9D1 is not available on ENCORE database.

  • 48 RBPs can affect the levels of B9D1.  








The Knockdown/knockout RNA-Seq assay for B9D1 is not available on ENCORE database.





48 RBPs can affect the gene expression of B9D1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
B9D1ENSG00000108641.1078.32780132.31090-0.756302.113501.56780HepG2ACO1
B9D1ENSG00000108641.10421.20510202.839901.054107.465706.63630HepG2AKAP1
B9D1ENSG00000108641.10135.04260250.94250-0.893906.257005.29150HepG2AUH
B9D1ENSG00000108641.1043.8413086.04100-0.972702.622601.87100HepG2CALR
B9D1ENSG00000108641.1072.31700132.24650-0.870803.859203.09930HepG2CKAP4
B9D1ENSG00000108641.1065.25530113.89000-0.803502.307501.48180HepG2DDX24
B9D1ENSG00000108641.1088.56520194.28100-1.133305.861804.98340HepG2DDX3X
B9D1ENSG00000108641.10158.22400100.103000.660403.002202.32790HepG2DNAJC2
B9D1ENSG00000108641.10109.58020172.65160-0.655901.999001.40810HepG2EIF4B
B9D1ENSG00000108641.10166.22250288.11440-0.793505.504804.70610HepG2ETF1
B9D1ENSG00000108641.1060.12540129.25980-1.104204.920603.81010HepG2EWSR1
B9D1ENSG00000108641.10102.11160168.14380-0.719502.644001.96070HepG2HNRNPK
B9D1ENSG00000108641.10315.50360195.869100.687705.346304.43580HepG2HNRNPL
B9D1ENSG00000108641.10157.96970112.676900.487401.857801.35200HepG2HNRNPU
B9D1ENSG00000108641.1093.87000203.52650-1.116506.657505.78640HepG2PUF60
B9D1ENSG00000108641.10202.02020134.762000.584002.896402.26970HepG2PUS1
B9D1ENSG00000108641.1056.63850112.67000-0.992202.616901.93060HepG2RAVER1
B9D1ENSG00000108641.10103.84650240.81060-1.213408.604607.80850HepG2RBM22
B9D1ENSG00000108641.1091.82090153.49210-0.741302.863802.17990HepG2RBM25
B9D1ENSG00000108641.10244.83600173.792900.494302.210201.71590HepG2NELFE
B9D1ENSG00000108641.1079.56240153.11250-0.944404.272503.45300HepG2RPLP0
B9D1ENSG00000108641.10103.3869057.867500.837102.334201.59670HepG2RPS3A
B9D1ENSG00000108641.10196.63130100.346800.970406.163005.26010HepG2SAFB2
B9D1ENSG00000108641.1047.94780128.96180-1.427406.579905.51340HepG2SF3A3
B9D1ENSG00000108641.1097.46230162.58070-0.738203.090002.46950HepG2SF3B4
B9D1ENSG00000108641.10209.23320115.128700.861804.166302.97360HepG2SMNDC1
B9D1ENSG00000108641.1072.99150271.98710-1.8977021.9638020.90330HepG2SRFBP1
B9D1ENSG00000108641.10256.65060169.701800.596703.137202.64200HepG2SRSF1
B9D1ENSG00000108641.10108.53030200.94870-0.888705.113404.30340HepG2SRSF5
B9D1ENSG00000108641.1070.01920138.06370-0.979504.713104.02880HepG2SRSF9
B9D1ENSG00000108641.1094.42960152.54200-0.691902.731302.17370HepG2TAF15
B9D1ENSG00000108641.1026.21290117.25600-2.161305.330604.47440HepG2U2AF1
B9D1ENSG00000108641.1018.3527065.57130-1.837103.060602.02110HepG2U2AF2
B9D1ENSG00000108641.1086.75300125.78470-0.536001.802401.33510HepG2ZNF622
B9D1ENSG00000108641.1069.35120225.15100-1.6989011.024809.96810K562AQR
B9D1ENSG00000108641.1051.9579098.30720-0.920002.289201.34160K562CNOT7
B9D1ENSG00000108641.10174.61300281.32760-0.688103.762002.61860K562CELF1
B9D1ENSG00000108641.1078.86520125.74520-0.673002.365601.75580K562DDX47
B9D1ENSG00000108641.1044.17030105.52780-1.256504.829603.60850K562EFTUD2
B9D1ENSG00000108641.1056.28110112.98300-1.005403.440902.27720K562EIF3D
B9D1ENSG00000108641.1014.4558060.77080-2.071704.970903.95850K562G3BP2
B9D1ENSG00000108641.1040.6119076.46760-0.912901.886201.38170K562HNRNPC
B9D1ENSG00000108641.1046.1896088.58600-0.939502.537801.36000K562HNRNPK
B9D1ENSG00000108641.10171.69860113.640400.595302.368601.39900K562HNRNPL
B9D1ENSG00000108641.10149.2631081.416600.874403.375302.49800K562HSPD1
B9D1ENSG00000108641.10142.9635093.034300.619702.305301.46980K562MATR3
B9D1ENSG00000108641.1037.0217082.94330-1.163803.328702.25540K562PCBP2
B9D1ENSG00000108641.10129.3898068.183700.924103.739602.76350K562PPIG
B9D1ENSG00000108641.1039.45630102.69080-1.380004.665703.69300K562PRPF8
B9D1ENSG00000108641.10156.12660249.63380-0.677103.061702.20450K562PUF60
B9D1ENSG00000108641.1059.84460104.59830-0.805602.204701.47890K562RPS19
B9D1ENSG00000108641.1020.3698058.80680-1.529603.541502.26920K562U2AF1
B9D1ENSG00000108641.109.9363060.76730-2.612508.429207.01310K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for B9D1 is not available on ENCORE database.





7 RBPs can affect the splicing of B9D1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSB9D1ENSG00000108641.10chr17-1924648219246808192464821924677419247102192471700.218000.015390.07643longerK562AQR
RIB9D1ENSG00000108641.10chr17-192464821924717019246482192467741924710219247170-0.243000.005450.03342excludedK562PUS1
RIB9D1ENSG00000108641.10chr17-192464821924717019246482192467741924710219247170-0.289000.000050.00083excludedK562AKAP8L
RIB9D1ENSG00000108641.10chr17-192464821924717019246482192467741924710219247170-0.244000.009460.08030excludedK562RBM15
RIB9D1ENSG00000108641.10chr17-1924648219247170192464821924677419247102192471700.316000.000080.00371includedHepG2KHSRP
RIB9D1ENSG00000108641.10chr17-1924648219247170192464821924677419247102192471700.292000.000590.01384includedHepG2FUBP3
RIB9D1ENSG00000108641.10chr17-1924648219247170192464821924677419247102192471700.285000.000820.01140includedHepG2HNRNPK
RIB9D1ENSG00000108641.10chr17-1924648219247170192464821924677419247102192471700.226000.016280.08213includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for B9D1 is not avaliable on ENCORE database.