ATRIP

General Information

Gene Name       : ATRIP
Gene ID             : ENSG00000164053.20
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: ATRIP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATRIPENSG00000164053.2011.9610.8611.41ENCSR000AEF
HepG2ATRIPENSG00000164053.205.648.967.30ENCSR985KAT
K562ATRIPENSG00000164053.2011.0010.4910.75ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATRIP is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATRIP RNA is bound by 1 proteins.  







eCLIP assay for ATRIP is not avaliable on ENCORE database.





1 proteins are bound to ATRIP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr34850645948506529+3'-UTR,5'-UTR,CDS,intron-Proximal4.827995.68502HepG2PRPF8
chr34850648448506594+intron-Distal,intron-Proximal4.234654.21433K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATRIP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATRIP is not available on ENCORE database.

  • 40 RBPs can affect the levels of ATRIP.  








The Knockdown/knockout RNA-Seq assay for ATRIP is not available on ENCORE database.





40 RBPs can affect the gene expression of ATRIP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATRIPENSG00000164053.13169.10110120.346200.490601.947801.42090HepG2ACO1
ATRIPENSG00000164053.13255.73770162.180900.657002.621902.10370HepG2AKAP1
ATRIPENSG00000164053.1359.39670110.67310-0.897902.787602.09820HepG2CPSF6
ATRIPENSG00000164053.13162.79710111.280900.548802.477401.68430HepG2DDX19B
ATRIPENSG00000164053.1383.10780133.46950-0.683501.948201.42200HepG2DDX6
ATRIPENSG00000164053.1365.65900128.28460-0.966303.277102.63570HepG2EIF2S1
ATRIPENSG00000164053.13214.20420141.758500.595502.262101.68210HepG2EIF4A3
ATRIPENSG00000164053.13123.94050207.71780-0.745003.280002.39740HepG2EIF4G2
ATRIPENSG00000164053.13219.75780143.112000.618702.473001.85230HepG2MAGOH
ATRIPENSG00000164053.13283.97360143.907500.980505.547104.67880HepG2MATR3
ATRIPENSG00000164053.13197.54130139.601700.500701.842301.38130HepG2NELFE
ATRIPENSG00000164053.13200.74930130.006800.626702.750502.13550HepG2RECQL
ATRIPENSG00000164053.13116.49120174.48200-0.582902.069101.46850HepG2RPLP0
ATRIPENSG00000164053.1357.82860111.98270-0.953403.240602.39910HepG2RRP9
ATRIPENSG00000164053.13152.42380258.98020-0.764804.826604.21750HepG2SRFBP1
ATRIPENSG00000164053.13223.99290136.319200.716403.537303.01920HepG2SRSF1
ATRIPENSG00000164053.1398.16260159.14490-0.697102.807802.10630HepG2SRSF7
ATRIPENSG00000164053.1389.76550146.19590-0.703702.371101.73910HepG2SUPV3L1
ATRIPENSG00000164053.13177.3323083.309401.089803.716902.48940HepG2TBRG4
ATRIPENSG00000164053.13188.77680113.254100.737003.610802.94180HepG2UTP3
ATRIPENSG00000164053.1374.51320158.40480-1.088005.589004.82670K562AGGF1
ATRIPENSG00000164053.1396.86680164.82000-0.766801.918301.37020K562AKAP8L
ATRIPENSG00000164053.13436.06860287.535400.600705.148404.29760K562DDX47
ATRIPENSG00000164053.13213.34750152.979500.479802.014001.32600K562EIF3G
ATRIPENSG00000164053.13344.64490146.557901.2335012.8747011.66780K562FXR1
ATRIPENSG00000164053.1368.97830187.52430-1.442905.581003.61780K562HNRNPA2B1
ATRIPENSG00000164053.13244.60660175.166900.481602.275601.44550K562MATR3
ATRIPENSG00000164053.1365.27510137.36170-1.073403.750402.68270K562NAA15
ATRIPENSG00000164053.13187.42990280.10280-0.579603.680602.83330K562NSUN2
ATRIPENSG00000164053.1363.65030164.12980-1.366604.562203.20320K562PABPN1
ATRIPENSG00000164053.13102.35890195.22950-0.931502.731301.31230K562PPP1R8
ATRIPENSG00000164053.13241.98000170.562800.504502.466101.83320K562PTBP1
ATRIPENSG00000164053.1364.62330163.50900-1.339207.017506.19830K562PUS1
ATRIPENSG00000164053.1381.68070159.27110-0.963404.707003.95390K562RBM15
ATRIPENSG00000164053.1392.25100201.93700-1.130302.895401.31570K562RBM39
ATRIPENSG00000164053.13301.45190212.689900.503102.194701.47090K562RPS19
ATRIPENSG00000164053.1363.94260150.15800-1.231603.152601.84550K562SF1
ATRIPENSG00000164053.1369.75110172.35850-1.305103.779302.25940K562SNRNP200
ATRIPENSG00000164053.13335.75680208.546600.686904.783003.69640K562SYNCRIP
ATRIPENSG00000164053.1393.94230202.90400-1.111002.979701.32350K562YTHDC2
ATRIPENSG00000164053.13325.38880439.56390-0.433902.613501.77910K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATRIP is not available on ENCORE database.





2 RBPs can affect the splicing of ATRIP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEATRIPENSG00000164053.13chr3+4849189848491981484914424849157648493134484933050.096000.000040.03056includedK562PUM2
MXEATRIPENSG00000164053.13chr3+4849569948495818484986584849881648493134484933054850075748500853-0.255000.007140.041032includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATRIP is not avaliable on ENCORE database.