ALKBH3

General Information

Gene Name       : ALKBH3
Gene ID             : ENSG00000166199.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ALKBH3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ALKBH3ENSG00000166199.1232.3234.4733.39ENCSR000AEF
HepG2ALKBH3ENSG00000166199.1218.1318.4618.30ENCSR985KAT
K562ALKBH3ENSG00000166199.1232.5533.5733.06ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ALKBH3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ALKBH3 RNA is bound by 3 proteins.  







eCLIP assay for ALKBH3 is not avaliable on ENCORE database.





3 proteins are bound to ALKBH3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr114394148443941556+3'-UTR,CDS3.966297.64164K562YBX3
chr114394060943940690+3'-UTR,CDS,intron-Proximal3.810033.12746HepG2GRWD1
chr114390248643902569+5'-UTR4.161853.67607K562YBX3
chr114390460943904659+CDS,intron-Proximal5.314045.26064K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ALKBH3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ALKBH3 is not available on ENCORE database.

  • 51 RBPs can affect the levels of ALKBH3.  








The Knockdown/knockout RNA-Seq assay for ALKBH3 is not available on ENCORE database.





51 RBPs can affect the gene expression of ALKBH3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ALKBH3ENSG00000166199.8448.64270293.933000.610003.179902.61430HepG2AKAP1
ALKBH3ENSG00000166199.8451.37310304.738500.566603.757403.07110HepG2BOP1
ALKBH3ENSG00000166199.8164.98060279.77240-0.762004.132603.30830HepG2CPSF6
ALKBH3ENSG00000166199.8228.60740149.834500.609403.178902.08690HepG2YBX3
ALKBH3ENSG00000166199.8377.52090269.611000.485603.417702.71940HepG2CELF1
ALKBH3ENSG00000166199.8128.10950317.70020-1.310307.537705.96680HepG2DDX59
ALKBH3ENSG00000166199.8262.84720169.226600.635202.853201.91910HepG2EEF2
ALKBH3ENSG00000166199.8249.02020137.394300.857804.639903.49260HepG2EIF3D
ALKBH3ENSG00000166199.8343.09430215.514400.670703.227702.40210HepG2FIP1L1
ALKBH3ENSG00000166199.8230.93550309.34520-0.421702.395401.72450HepG2HNRNPF
ALKBH3ENSG00000166199.8219.37690304.61580-0.473602.476401.79030HepG2IGF2BP1
ALKBH3ENSG00000166199.8228.82360167.642200.448802.455001.76030HepG2ILF2
ALKBH3ENSG00000166199.8367.16330260.822300.493302.162301.60100HepG2MATR3
ALKBH3ENSG00000166199.8256.97210174.439100.558802.594701.81080HepG2MSI2
ALKBH3ENSG00000166199.8189.14570102.740000.880403.652601.81660HepG2PA2G4
ALKBH3ENSG00000166199.8255.47870162.444600.653203.942702.95080HepG2PARN
ALKBH3ENSG00000166199.8215.92820146.380900.560702.792402.05250HepG2PPIL4
ALKBH3ENSG00000166199.8147.59680224.36150-0.604203.177302.35360HepG2PRPF4
ALKBH3ENSG00000166199.8181.50010250.95720-0.467502.353601.84190HepG2PTBP1
ALKBH3ENSG00000166199.8320.42200192.335400.736202.903702.18330HepG2RAVER1
ALKBH3ENSG00000166199.8342.52810234.262100.548003.446702.49790HepG2RBM15
ALKBH3ENSG00000166199.8139.73550246.65060-0.819804.693503.83590HepG2RBM25
ALKBH3ENSG00000166199.8307.97200216.339300.509402.284201.39170HepG2RBM27
ALKBH3ENSG00000166199.8194.01640260.13410-0.423101.825301.30950HepG2RECQL
ALKBH3ENSG00000166199.8290.23030133.671701.118408.852607.82750HepG2RPS19
ALKBH3ENSG00000166199.8238.08030146.153200.703904.404003.62380HepG2SAFB2
ALKBH3ENSG00000166199.8218.22080134.190400.701403.280302.25270HepG2SERBP1
ALKBH3ENSG00000166199.8297.25970214.495100.470701.879401.32130HepG2SF3A3
ALKBH3ENSG00000166199.8231.06350308.10610-0.415102.168501.60540HepG2SUCLG1
ALKBH3ENSG00000166199.8215.38570145.539300.565402.866001.90840HepG2SUPT6H
ALKBH3ENSG00000166199.8178.03260110.991500.681602.312801.39480HepG2TFIP11
ALKBH3ENSG00000166199.8232.91800160.899800.533602.840002.27060HepG2TRIM56
ALKBH3ENSG00000166199.8309.37610184.367600.746704.178703.41410HepG2U2AF1
ALKBH3ENSG00000166199.8161.1685097.818800.720302.670801.92450HepG2UCHL5
ALKBH3ENSG00000166199.8265.62200183.654500.532302.918102.30660HepG2UTP3
ALKBH3ENSG00000166199.8288.94330209.210500.465702.782902.23490HepG2ZNF622
ALKBH3ENSG00000166199.8448.68700575.30690-0.358602.681102.11980K562AGGF1
ALKBH3ENSG00000166199.8383.47950598.62180-0.642505.639004.68920K562AKAP8L
ALKBH3ENSG00000166199.8673.75030498.954200.433202.769602.18120K562AQR
ALKBH3ENSG00000166199.8939.06720544.985300.784907.310306.31980K562DDX47
ALKBH3ENSG00000166199.8340.44770160.060401.088705.681604.20430K562EIF3A
ALKBH3ENSG00000166199.8412.07210282.036700.546904.003703.05550K562EIF3G
ALKBH3ENSG00000166199.8405.42290244.227400.731106.384905.52180K562FXR1
ALKBH3ENSG00000166199.81049.44980592.587300.8244011.238009.68880K562GRSF1
ALKBH3ENSG00000166199.8927.41930594.790400.640706.166104.99010K562HSPD1
ALKBH3ENSG00000166199.8387.50610286.394300.436102.531701.40460K562IGF2BP3
ALKBH3ENSG00000166199.8565.74770711.72060-0.331202.358701.52900K562MBNL1
ALKBH3ENSG00000166199.8207.02960287.49880-0.473702.528601.88990K562PTBP1
ALKBH3ENSG00000166199.8906.14140681.654300.410603.331602.43760K562PUF60
ALKBH3ENSG00000166199.8328.57640593.74820-0.853607.767706.90430K562PUS1
ALKBH3ENSG00000166199.8397.78980578.45220-0.540204.802804.04170K562RBM15
ALKBH3ENSG00000166199.8672.80570291.108901.2085013.9500012.08970K562RPS19
ALKBH3ENSG00000166199.8439.61120266.003600.724704.553003.22890K562RPS3
ALKBH3ENSG00000166199.8496.61200329.509200.591704.832803.74130K562SYNCRIP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ALKBH3 is not available on ENCORE database.





10 RBPs can affect the splicing of ALKBH3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEALKBH3ENSG00000166199.8chr11+439230654392327543911311439113784394058743940686-0.225000.001460.04963excludedK562PRPF8
SEALKBH3ENSG00000166199.8chr11+439135904391367943911274439113784394058743940686-0.064000.004580.09835excludedK562AKAP8L
SEALKBH3ENSG00000166199.8chr11+439230654392327543911311439113784394058743940686-0.212000.000000.00009excludedK562AQR
SEALKBH3ENSG00000166199.8chr11+439055324390556743904634439047384390815543908203-0.308000.000000.00000excludedK562AQR
SEALKBH3ENSG00000166199.8chr11+439230654392327543911311439113784394058743940686-0.076000.001440.02308excludedK562PUS1
SEALKBH3ENSG00000166199.8chr11+439135904391367943911274439113784392306543923275-0.199000.000120.03778excludedHepG2CDC40
SEALKBH3ENSG00000166199.8chr11+439135904391367943911274439113784392306543923275-0.232000.000120.00549excludedHepG2SF3A3
SEALKBH3ENSG00000166199.8chr11+439135904391367943911274439113784392306543923275-0.232000.001380.02622excludedK562U2AF2
SEALKBH3ENSG00000166199.8chr11+439135904391367943911274439113784392306543923275-0.186000.001300.04612excludedK562TARDBP
SEALKBH3ENSG00000166199.8chr11+439135904391367943911274439113784394058743940592-0.103000.000420.01395excludedK562AGGF1
SEALKBH3ENSG00000166199.8chr11+439135904391367943911274439113784392306543923275-0.154000.000030.00089excludedK562HNRNPC
A3SSALKBH3ENSG00000166199.8chr11+4394144543941560439414674394156043940587439406860.137000.000000.00000longerK562AQR
A3SSALKBH3ENSG00000166199.8chr11+439081554390820343908158439082034390535243905567-0.159000.009850.05222shorterK562AQR
MXEALKBH3ENSG00000166199.8chr11+4391355243913679439187444391890443911274439113784392306543923275-0.089000.005530.039172includedK562AQR
MXEALKBH3ENSG00000166199.8chr11+4391355243913679439187284391890443911274439113784392306543923275-0.074000.009450.060502includedK562AQR
MXEALKBH3ENSG00000166199.8chr11+4391359043913624439187444391890443911274439113784392306543923275-0.125000.009880.062692includedK562AQR
MXEALKBH3ENSG00000166199.8chr11+4391359043913679439187444391890443911274439113784392306543923275-0.051000.002210.018142includedK562AQR
MXEALKBH3ENSG00000166199.8chr11+4391345243913679439187444391890443911274439113784392306543923275-0.091000.004330.031832includedK562AQR
MXEALKBH3ENSG00000166199.8chr11+4391345243913679439187284391890443911274439113784392306543923275-0.077000.007600.050652includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ALKBH3 is not avaliable on ENCORE database.