PPIA

General Information

Gene Name : PPIA
Gene ID : ENSG00000196262.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PPIA)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PPIA	ENSG00000196262.13	5095.21	5431.87	5263.54	ENCSR000AEF
HepG2	PPIA	ENSG00000196262.13	3213.12	4202.53	3707.82	ENCSR985KAT
K562	PPIA	ENSG00000196262.13	5803.02	5047.37	5425.19	ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	PPIA-BG293LV04-WT293		PPIA	293T	Released			shRNA	KD% = ,
knockdown followed by RNA-seq	PPIA-BG293LV06-WT293		PPIA	293T	Released			shRNA	KD% = ,

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
PPIA	293T	shRNA	BG293LV04-47,BG293LV04-48	BG293LV04-1,BG293LV04-2		NotSatisfied	ENCORE2
PPIA	293T	shRNA	PPIA-BG293LV04-49,PPIA-BG293LV04-50	NT-BG293LV04-1,NT-BG293LV04-2	,	Released	ENCORE2
PPIA	293T	shRNA	PPIA-BG293LV06-43,PPIA-BG293LV06-44	NT-BG293LV06-1,NT-BG293LV06-2	,	Released	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PPIA is not avaliable on ENCORE database.

Proteins bound to RNA

PPIA RNA is bound by 45 proteins.

CanvasJS.com

eCLIP assay for PPIA is not avaliable on ENCORE database.

45 proteins are bound to PPIA RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	44836477	44836491	+	intron-Proximal	8.80111	93.60179	K562	AKAP8L
chr7	44836405	44836459	+	intron-Proximal	6.77346	87.22645	K562	AKAP8L
chr7	44836459	44836477	+	intron-Proximal	7.08422	85.23671	K562	AKAP8L
chr7	44836491	44836535	+	intron-Distal,intron-Proximal	6.87854	54.16379	K562	AKAP8L
chr7	44836351	44836435	+	5'-UTR,CDS,intron-Proximal	5.19956	46.74678	HepG2	PRPF8
chr7	44838793	44838882	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.91700	40.53233	K562	SF3B4
chr7	44836445	44836499	+	intron-Distal,intron-Proximal	5.37699	31.92241	HepG2	EFTUD2
chr7	44841520	44841681	+	3'-UTR,intron-Distal	4.84192	30.13891	K562	UPF1
chr7	44836442	44836523	+	intron-Distal,intron-Proximal	4.48970	30.10923	K562	GEMIN5
chr7	44841941	44841968	+	3'-UTR,intron-Distal	4.93418	23.49339	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 131 entries

eCLIP assay for PPIA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PPIA is not available on ENCORE database.
134 RBPs can affect the levels of PPIA.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PPIA is not available on ENCORE database.

134 RBPs can affect the gene expression of PPIA :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PPIA	ENSG00000196262.9	11008.23370	20879.28840	-0.92350	63.06090	61.14300	HepG2	SRSF9
PPIA	ENSG00000196262.9	13050.90540	24587.89350	-0.91380	58.67540	56.64470	HepG2	SF3B4
PPIA	ENSG00000196262.9	14901.64610	27932.53160	-0.90650	54.29040	52.25170	HepG2	ETF1
PPIA	ENSG00000196262.9	8614.22330	19081.85000	-1.14740	50.78150	49.13690	HepG2	TIAL1
PPIA	ENSG00000196262.9	22228.29560	31669.46600	-0.51070	40.57010	38.29880	K562	NSUN2
PPIA	ENSG00000196262.9	13782.58280	23616.42750	-0.77690	39.69120	38.12320	HepG2	PTBP1
PPIA	ENSG00000196262.9	14658.95340	24478.81260	-0.73980	39.54360	37.74660	HepG2	RECQL
PPIA	ENSG00000196262.9	13495.74710	25577.34550	-0.92240	38.88770	37.02430	HepG2	QKI
PPIA	ENSG00000196262.9	16123.86250	26282.88320	-0.70490	35.17460	33.70880	HepG2	NELFE
PPIA	ENSG00000196262.9	8770.42690	23681.85980	-1.43310	33.23510	31.06730	HepG2	EIF4A3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 167 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PPIA is not available on ENCORE database.

14 RBPs can affect the splicing of PPIA :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PPIA	ENSG00000196262.9	chr7	+	44840022	44840142	44836280	44836392	44840885	44841223	-0.50700	0.00000	0.00005	excluded	K562	PUS1
SE	PPIA	ENSG00000196262.9	chr7	+	44840022	44840142	44839300	44839473	44840885	44841223	0.09700	0.00000	0.00000	included	K562	HNRNPC
A5SS	PPIA	ENSG00000196262.9	chr7	+	44838346	44838503	44838346	44838413	44838845	44838876	0.18500	0.00000	0.00041	longer	K562	RBM22
A5SS	PPIA	ENSG00000196262.9	chr7	+	44838346	44838503	44838346	44838413	44838845	44838876	-0.21200	0.00000	0.01242	shorter	HepG2	ILF3
SE	PPIA	ENSG00000196262.9	chr7	+	44840022	44840142	44836280	44836392	44840885	44841223	-0.49300	0.00001	0.00069	excluded	K562	RBM15
A5SS	PPIA	ENSG00000196262.9	chr7	+	44838346	44838503	44838346	44838413	44838845	44838876	-0.25000	0.00001	0.01377	shorter	HepG2	XRCC6
A5SS	PPIA	ENSG00000196262.9	chr7	+	44838346	44838503	44838346	44838413	44838845	44838876	-0.21900	0.00003	0.00979	shorter	HepG2	NCBP2
A5SS	PPIA	ENSG00000196262.9	chr7	+	44838346	44838503	44838346	44838413	44838845	44838876	-0.16400	0.00005	0.00494	shorter	HepG2	SRSF1
A5SS	PPIA	ENSG00000196262.9	chr7	+	44838346	44838503	44838346	44838413	44838845	44838876	-0.20900	0.00005	0.01481	shorter	K562	HNRNPU
A5SS	PPIA	ENSG00000196262.9	chr7	+	44838346	44838503	44838346	44838413	44838845	44838876	0.18400	0.00012	0.02956	longer	HepG2	DDX6

Showing 1 to 10 of 15 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PPIA

General Information

Functions

Localization

Domains (AlphaFold: PPIA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PPIA is not avaliable on ENCORE database.

45 proteins are bound to PPIA RNA:

eCLIP assay for PPIA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PPIA is not available on ENCORE database.

134 RBPs can affect the gene expression of PPIA :

The Knockdown/knockout RNA-Seq assay for PPIA is not available on ENCORE database.

14 RBPs can affect the splicing of PPIA :

The Knockdown/knockout RNA-Seq assay for PPIA is not avaliable on ENCORE database.