ARPC3

General Information

Gene Name : ARPC3
Gene ID : ENSG00000111229.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ARPC3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ARPC3	ENSG00000111229.15	430.84	351.37	391.11	ENCSR000AEF
HepG2	ARPC3	ENSG00000111229.15	142.48	281.34	211.91	ENCSR985KAT
K562	ARPC3	ENSG00000111229.15	235.83	232.06	233.94	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ARPC3 is not avaliable on ENCORE database.

Proteins bound to RNA

ARPC3 RNA is bound by 15 proteins.

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eCLIP assay for ARPC3 is not avaliable on ENCORE database.

15 proteins are bound to ARPC3 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	110872732	110872774	-	3'-UTR,intron-Distal	4.84478	70.55807	K562	PABPC4
chr12	110872774	110872824	-	3'-UTR,intron-Distal	4.01663	45.88961	K562	PABPC4
chr12	110883261	110883349	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.14885	28.69338	K562	DDX3X
chr12	110883302	110883347	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.30335	24.70653	K562	YBX3
chr12	110872985	110873023	-	CDS,intron-Distal	4.50125	23.01843	K562	LIN28B
chr12	110873916	110873921	-	CDS,intron-Distal,intron-Proximal	4.82316	22.05531	K562	LIN28B
chr12	110873913	110873916	-	CDS,intron-Distal,intron-Proximal	4.82316	22.05531	K562	LIN28B
chr12	110888065	110888144	-	5'-UTR,intron-Distal,intron-Proximal	3.77917	21.96070	K562	DDX3X
chr12	110873921	110873947	-	CDS,intron-Distal,intron-Proximal	4.08619	15.18585	K562	LIN28B
chr12	110872744	110872776	-	3'-UTR,intron-Distal	4.54779	14.88273	HepG2	SUB1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 38 entries

eCLIP assay for ARPC3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ARPC3 is not available on ENCORE database.
204 RBPs can affect the levels of ARPC3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ARPC3 is not available on ENCORE database.

204 RBPs can affect the gene expression of ARPC3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ARPC3	ENSG00000111229.11	4031.44370	1329.52140	1.60030	113.41930	111.48140	HepG2	SRSF1
ARPC3	ENSG00000111229.11	3177.84820	1081.69180	1.55470	101.99380	99.67720	HepG2	SRSF9
ARPC3	ENSG00000111229.11	2771.04680	1202.35160	1.20450	56.46310	54.36950	HepG2	PCBP1
ARPC3	ENSG00000111229.11	4166.93180	1228.16630	1.76240	54.35880	51.67270	HepG2	CIRBP
ARPC3	ENSG00000111229.11	3040.46660	1195.20400	1.34690	53.17140	51.11520	HepG2	TAF15
ARPC3	ENSG00000111229.11	2797.93370	1223.52550	1.19320	52.11380	50.39410	HepG2	PTBP1
ARPC3	ENSG00000111229.11	2768.13950	1389.54930	0.99420	51.63910	50.04440	HepG2	ZNF622
ARPC3	ENSG00000111229.11	2817.69860	1273.69050	1.14540	50.42640	48.52400	HepG2	SF3B4
ARPC3	ENSG00000111229.11	4952.49260	1496.57140	1.72640	48.88330	46.56480	HepG2	DDX3X
ARPC3	ENSG00000111229.11	2737.36940	1268.27160	1.10980	47.62910	45.71510	HepG2	RECQL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 236 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ARPC3 is not available on ENCORE database.

10 RBPs can affect the splicing of ARPC3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ARPC3	ENSG00000111229.11	chr12	-	110874469	110874488	110873982	110874009	110874888	110874977	-0.07400	0.00000	0.00000	excluded	K562	AQR
SE	ARPC3	ENSG00000111229.11	chr12	-	110878116	110878252	110874888	110874957	110883256	110883356	-0.07900	0.00000	0.00000	excluded	K562	AQR
SE	ARPC3	ENSG00000111229.11	chr12	-	110874469	110874488	110873982	110874009	110874888	110874957	0.14900	0.00000	0.00005	included	HepG2	PTBP1
SE	ARPC3	ENSG00000111229.11	chr12	-	110874469	110874488	110873982	110874009	110874888	110874957	0.13500	0.00000	0.00001	included	HepG2	SRSF1
SE	ARPC3	ENSG00000111229.11	chr12	-	110874351	110874488	110873914	110874009	110874888	110874957	0.06800	0.00000	0.00001	included	HepG2	PCBP1
A3SS	ARPC3	ENSG00000111229.11	chr12	-	110873914	110874155	110873914	110874009	110874361	110874488	0.07700	0.00000	0.00000	longer	K562	AQR
RI	ARPC3	ENSG00000111229.11	chr12	-	110873914	110874488	110873914	110874009	110874361	110874488	0.09200	0.00000	0.00000	included	K562	AQR
RI	ARPC3	ENSG00000111229.11	chr12	-	110873914	110874488	110873914	110874034	110874361	110874488	-0.60400	0.00000	0.00000	excluded	K562	AQR
SE	ARPC3	ENSG00000111229.11	chr12	-	110874469	110874488	110873982	110874009	110874888	110874957	0.13400	0.00001	0.00182	included	HepG2	QKI
SE	ARPC3	ENSG00000111229.11	chr12	-	110874469	110874488	110873982	110874009	110874888	110874957	0.12800	0.00001	0.00332	included	HepG2	TAF15

Showing 1 to 10 of 15 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ARPC3

General Information

Functions

Localization

Domains (AlphaFold: ARPC3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ARPC3 is not avaliable on ENCORE database.

15 proteins are bound to ARPC3 RNA:

eCLIP assay for ARPC3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ARPC3 is not available on ENCORE database.

204 RBPs can affect the gene expression of ARPC3 :

The Knockdown/knockout RNA-Seq assay for ARPC3 is not available on ENCORE database.

10 RBPs can affect the splicing of ARPC3 :

The Knockdown/knockout RNA-Seq assay for ARPC3 is not avaliable on ENCORE database.