AFP

General Information

Gene Name       : AFP
Gene ID             : ENSG00000081051.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AFP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878AFPENSG00000081051.70.000.000.00ENCSR000AEF
HepG2AFPENSG00000081051.73849.564208.974029.27ENCSR985KAT
K562AFPENSG00000081051.71.801.201.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AFP is not avaliable on ENCORE database.



Proteins bound to RNA
  • AFP RNA is bound by 31 proteins.  







eCLIP assay for AFP is not avaliable on ENCORE database.





31 proteins are bound to AFP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr47432140474321435+3'-UTR,CDS6.088608.98836HepG2TIA1
chr47432097574320997+3'-UTR,CDS,intron-Distal5.5235410.23945HepG2TIA1
chr47432138174321395+3'-UTR,CDS3.3475928.72109HepG2TIAL1
chr47432099774321007+3'-UTR,intron-Distal5.1111313.28045HepG2TIA1
chr47432136874321381+3'-UTR,CDS3.5267940.31564HepG2TIAL1
chr47432145774321476+3'-UTR4.4378141.20258HepG2TIAL1
chr47432139874321408+3'-UTR,CDS3.06446400.00000HepG2LARP4
chr47432147674321487+3'-UTR5.1223122.42545HepG2TIAL1
chr47432099574321007+3'-UTR,intron-Distal3.17723400.00000HepG2LARP4
chr47432140074321415+3'-UTR,CDS3.21465400.00000HepG2ZC3H11A
chr47432141974321446+3'-UTR,CDS3.4935147.28901HepG2TIAL1
chr47432134774321359+3'-UTR,CDS,intron-Proximal3.0851540.34672HepG2RPS3
chr47432140574321456+3'-UTR,CDS4.36307400.00000HepG2DDX6
chr47432134774321349+3'-UTR,CDS,intron-Proximal3.30835400.00000HepG2LARP4
chr47432134974321364+3'-UTR,CDS3.26169400.00000HepG2LARP4
chr47432151374321545+3'-UTR5.4533310.98400HepG2CSTF2
chr47432140974321418+3'-UTR,CDS3.7679344.96086HepG2TIAL1
chr47432154574321588+3'-UTR5.8834318.42614HepG2CSTF2
chr47432140674321415+3'-UTR,CDS3.5632548.40131HepG2DDX55
chr47432136974321404+3'-UTR,CDS6.1306323.86190HepG2TIA1
chr47432133774321369+3'-UTR,CDS,intron-Proximal5.6663918.45993HepG2TIA1
chr47432144674321457+3'-UTR4.0655741.90890HepG2TIAL1
chr47432136874321375+3'-UTR,CDS3.09846400.00000HepG2LARP4
chr47432143574321488+3'-UTR7.3275431.85849HepG2TIA1
chr47432139574321409+3'-UTR,CDS3.9343253.00850HepG2TIAL1
chr47432145674321468+3'-UTR3.9787733.07394HepG2DDX6
chr47430194174301966+5'-UTR,intron-Distal3.1878116.63333HepG2DDX3X
chr47431819574318215+CDS3.0046564.78181HepG2SDAD1
chr47430914874309155+CDS3.12248400.00000HepG2BCLAF1
chr47431330174313319+CDS3.99349400.00000HepG2BCLAF1
chr47431826274318282+CDS3.0996757.47312HepG2ZNF800
chr47430646074306468+CDS4.32917400.00000HepG2SND1
chr47432097874320995+CDS,intron-Distal3.06387400.00000HepG2LARP4
chr47431076974310791+CDS4.48042400.00000HepG2SND1
chr47431512974315141+CDS3.16033400.00000HepG2BCLAF1
chr47430389074303899+CDS,intron-Proximal3.1113256.98159HepG2RPS3
chr47430291274302925+CDS3.48382400.00000HepG2RPS3
chr47431514174315159+CDS3.30626400.00000HepG2ZNF800
chr47430390974303955+CDS4.047478.83938HepG2TIA1
chr47431326474313273+CDS5.1604588.24406HepG2SND1
chr47431825574318277+CDS3.5524544.83663HepG2SDAD1
chr47431575474315805+CDS4.0472764.03790HepG2TRA2A
chr47431820974318220+CDS4.57229400.00000HepG2SND1
chr47431081674310836+CDS4.85102400.00000HepG2SND1
chr47431948974319499+CDS3.22185400.00000HepG2BCLAF1
chr47431827874318338+CDS3.66655400.00000HepG2NOLC1
chr47431825574318282+CDS3.690866.95862HepG2IGF2BP3
chr47431639974316420+CDS4.66844400.00000HepG2SND1
chr47431319674313214+CDS3.2238468.61968HepG2ZNF800
chr47430801874308024+CDS4.35872400.00000HepG2SND1
chr47431514874315159+CDS4.0407782.61085HepG2SND1
chr47431579474315797+CDS3.50990400.00000HepG2BCLAF1
chr47430915874309161+CDS3.08482400.00000HepG2BCLAF1
chr47431953274319545+CDS4.90960400.00000HepG2SND1
chr47430636574306372+CDS4.6887484.29829HepG2SND1
chr47431644374316467+CDS4.94769400.00000HepG2SND1
chr47431644974316469+CDS3.2331056.03889HepG2NOLC1
chr47430634174306344+CDS4.1294173.47971HepG2SND1
chr47431828974318342+CDS,intron-Proximal3.0232237.57167HepG2IGF2BP1
chr47431824974318262+CDS3.1840147.26736HepG2ZNF800
chr47431817574318253+CDS4.7096711.53454K562DHX30
chr47431516874315177+CDS3.87598400.00000HepG2BCLAF1
chr47430639874306431+CDS4.63901400.00000HepG2SND1
chr47430390274303909+CDS4.386606.20559HepG2TIA1
chr47431821574318251+CDS3.1790364.79618HepG2SDAD1
chr47430801874308037+CDS3.0042729.97642HepG2NOLC1
chr47430401974304022+CDS4.5326975.52011HepG2SND1
chr47431579874315820+CDS3.3010730.67111HepG2LIN28B
chr47431081174310839+CDS3.45303400.00000HepG2RPS3
chr47430206174302064+CDS,intron-Distal3.2783849.29487HepG2RPS3
chr47430915574309158+CDS3.12813400.00000HepG2BCLAF1
chr47431816274318194+CDS4.39670400.00000HepG2SND1
chr47430287674302880+CDS,intron-Proximal4.0055767.20433HepG2RPS3
chr47431956274319591+CDS3.21432400.00000HepG2RPS3
chr47431079374310806+CDS3.3707851.33941HepG2NOLC1
chr47431319974313206+CDS4.5143082.04972HepG2SND1
chr47430400074304017+CDS4.97198400.00000HepG2SND1
chr47431506274315113+CDS3.1999864.46553HepG2SDAD1
chr47431070974310716+CDS,intron-Proximal4.6812859.48804HepG2NOLC1
chr47431579074315810+CDS3.08814400.00000HepG2GRWD1
chr47430201074302016+CDS,intron-Distal3.4409210.10066HepG2TIAL1
chr47431954474319564+CDS3.2532339.04444HepG2SDAD1
chr47430913574309145+CDS3.8928461.34315HepG2NOLC1
chr47431827874318316+CDS3.43081400.00000HepG2SDAD1
chr47431578974315798+CDS3.8529848.19721HepG2LIN28B
chr47430914674309156+CDS4.585366.34565HepG2IGF2BP3
chr47430292574302928+CDS3.3780877.51148HepG2RPS3
chr47431829274318314+CDS3.05504400.00000HepG2ZNF800
chr47430650974306526+CDS3.92784400.00000HepG2SND1
chr47431511374315157+CDS3.0611065.75721HepG2SDAD1
chr47430643174306460+CDS4.59118400.00000HepG2SND1
chr47431948174319493+CDS,intron-Proximal3.930617.41807HepG2IGF2BP3
chr47431323474313248+CDS3.2457453.72011HepG2ZNF800
chr47431575274315754+CDS,intron-Proximal4.4284447.81602HepG2TRA2A
chr47430398974304023+CDS3.15240400.00000HepG2RPS3
chr47431828574318340+CDS4.64603400.00000HepG2SND1
chr47431325374313264+CDS5.40919400.00000HepG2SND1
chr47431824674318278+CDS3.7830876.53170HepG2NOLC1
chr47431956274319577+CDS4.70702400.00000HepG2SND1
chr47431828174318336+CDS3.33891400.00000HepG2RPS3
chr47431506174315112+CDS3.14413400.00000HepG2ZNF800
chr47430201674302047+CDS,intron-Distal3.0898133.93222HepG2TIAL1
chr47431815074318194+CDS3.34121400.00000HepG2RPS3
chr47431828274318292+CDS3.17967400.00000HepG2ZNF800
chr47431954574319562+CDS5.30704400.00000HepG2SND1
chr47431824674318280+CDS3.64934400.00000HepG2RPS3
chr47431831674318338+CDS3.2672585.69097HepG2SDAD1
chr47431321474313234+CDS3.4090070.45606HepG2ZNF800
chr47431516074315170+CDS3.7970849.53462HepG2TRA2A
chr47431646774316470+CDS4.92931400.00000HepG2SND1
chr47431957074319589+CDS3.2963652.87041HepG2ZNF800
chr47431506874315107+CDS4.63832400.00000HepG2SND1
chr47431518074315185+CDS,intron-Proximal4.3752054.01302HepG2TRA2A
chr47431317874313199+CDS,intron-Proximal3.332656.23568HepG2IGF2BP3
chr47431811774318126+CDS,intron-Proximal3.3826251.40117HepG2RPS3
chr47430202474302063+CDS,intron-Distal4.348505.21024HepG2TIA1
chr47431517774315180+CDS3.88684400.00000HepG2BCLAF1
chr47431075074310787+CDS3.3467846.29250HepG2NOLC1
chr47432096374320973+CDS,intron-Distal3.14558400.00000HepG2LARP4
chr47431317874313199+CDS,intron-Proximal4.81326400.00000HepG2SND1
chr47431506574315108+CDS3.02121400.00000HepG2RPS3
chr47431515674315161+CDS3.59508400.00000HepG2BCLAF1
chr47430805174308063+CDS4.17361400.00000HepG2SND1
chr47431080674310839+CDS3.70575400.00000HepG2NOLC1
chr47431579874315818+CDS4.56079400.00000HepG2SND1
chr47430631874306320+CDS,intron-Proximal4.6754479.90434HepG2SND1
chr47431329474313301+CDS4.24590400.00000HepG2BCLAF1
chr47431513274315137+CDS3.8154172.72086HepG2SND1
chr47431577074315798+CDS4.62861400.00000HepG2SND1
chr47431954974319561+CDS3.38683400.00000HepG2LARP4
chr47431575274315754+CDS,intron-Proximal3.95831400.00000HepG2BCLAF1
chr47430806574308086+CDS3.2086340.21505HepG2NOLC1
chr47431644374316470+CDS3.3630182.67524HepG2RPS3
chr47430288074302890+CDS3.9645877.90518HepG2RPS3
chr47431828274318341+CDS5.2843646.27547HepG2IGF2BP3
chr47431576874315789+CDS3.5082950.21394HepG2LIN28B
chr47431954174319562+CDS3.71533400.00000HepG2RPS3
chr47431517074315180+CDS4.0347957.78118HepG2TRA2A
chr47430913674309148+CDS3.21776400.00000HepG2BCLAF1
chr47431948174319483+CDS,intron-Proximal3.1626517.72983HepG2LIN28B
chr47431575474315760+CDS3.94925400.00000HepG2BCLAF1
chr47431825174318262+CDS4.31786400.00000HepG2SND1
chr47431506174315107+CDS3.5127288.08518HepG2NOLC1
chr47431576874315794+CDS3.89183400.00000HepG2BCLAF1
chr47431816674318194+CDS3.0723911.15003HepG2IGF2BP3
chr47431318074313228+CDS4.00725400.00000HepG2NOLC1
chr47430652674306529+CDS4.0888475.04747HepG2SND1
chr47431819474318209+CDS4.75647400.00000HepG2SND1
chr47430806874308088+CDS4.18495400.00000HepG2SND1
chr47430632074306339+CDS4.46937400.00000HepG2SND1
chr47431318474313200+CDS3.0793350.14544HepG2RPS3
chr47431811774318138+CDS,intron-Proximal4.75175400.00000HepG2SND1
chr47431318574313196+CDS3.1820753.14270HepG2ZNF800
chr47431584174315845+CDS3.00246400.00000HepG2BCLAF1
chr47432096774320975+CDS,intron-Distal5.154107.33810HepG2TIA1
chr47430803774308056+CDS3.0432037.05148HepG2NOLC1
chr47431951774319549+CDS3.02349400.00000HepG2LARP4
chr47431811874318126+CDS3.0165732.34939HepG2SDAD1
chr47431515374315156+CDS3.48802400.00000HepG2BCLAF1
chr47431505574315061+CDS3.0665040.16560HepG2ZNF800
chr47430631874306321+CDS,intron-Proximal3.0078526.68502HepG2SDAD1
chr47430649374306504+CDS4.11842400.00000HepG2SND1
chr47431317874313184+CDS,intron-Proximal3.0784750.20351HepG2RPS3
chr47430397374304000+CDS4.88235400.00000HepG2SND1
chr47430650474306509+CDS3.79807400.00000HepG2SND1
chr47430915674309160+CDS4.458075.79075HepG2IGF2BP3
chr47430639074306415+CDS3.1143585.59154HepG2ZNF800
chr47431956474319593+CDS3.2030441.70290HepG2SDAD1
chr47430289074302898+CDS3.88924400.00000HepG2RPS3
chr47430914574309161+CDS4.0547966.04656HepG2NOLC1
chr47431831474318340+CDS3.04084400.00000HepG2ZNF800
chr47431819474318209+CDS3.30499400.00000HepG2RPS3
chr47430806874308082+CDS3.506196.39448HepG2IGF2BP3
chr47431950374319527+CDS3.0654046.28147HepG2ZNF800
chr47431514274315153+CDS3.31473400.00000HepG2BCLAF1
chr47431814474318193+CDS3.03000400.00000HepG2ZNF800
chr47431820974318245+CDS3.36307400.00000HepG2RPS3
chr47430802474308051+CDS4.29564400.00000HepG2SND1
chr47431822074318251+CDS4.90559400.00000HepG2SND1
chr47431516174315168+CDS3.74593400.00000HepG2BCLAF1
chr47431317874313180+CDS,intron-Proximal3.9974564.62129HepG2NOLC1
chr47431324574313253+CDS4.95415400.00000HepG2SND1
chr47431642074316443+CDS5.15227400.00000HepG2SND1
chr47431634374316399+CDS4.15334400.00000HepG2SND1
chr47431081774310833+CDS3.0412863.35320HepG2ZNF800
chr47430289874302912+CDS3.6596187.82906HepG2RPS3
chr47431518074315184+CDS4.12962400.00000HepG2BCLAF1
chr47431512474315141+CDS3.06368400.00000HepG2LIN28B
chr47430802274308065+CDS4.7004412.41224HepG2IGF2BP3
chr47430809274308120+CDS3.10361400.00000HepG2ZNF800
chr47431828774318330+CDS3.707796.62676K562DHX30
chr47431083374310839+CDS3.0434450.80264HepG2ZNF800
chr47431955274319567+CDS3.5974656.71095HepG2ZNF800
chr47431083674310839+CDS4.82597400.00000HepG2SND1
chr47430631874306320+CDS,intron-Proximal3.0651272.88833HepG2RPS3
chr47432097374320978+CDS,intron-Distal3.15768400.00000HepG2LARP4
chr47431079374310816+CDS4.54766400.00000HepG2SND1
chr47431638374316414+CDS3.52192400.00000HepG2RPS3
chr47430637274306398+CDS4.72372400.00000HepG2SND1
chr47431814974318195+CDS3.2630965.33248HepG2SDAD1
chr47431515974315171+CDS4.48025400.00000HepG2SND1
chr47431322374313228+CDS3.00563400.00000HepG2BCLAF1
chr47431303574313063+intron-Distal5.02689400.00000HepG2PCBP2
chr47430269074302727+intron-Distal3.8092814.59224HepG2U2AF2
chr47431785374317863+intron-Distal3.416707.18532HepG2HNRNPL
chr47431256774312633+intron-Distal4.045016.18298HepG2TRA2A
chr47431307374313105+intron-Distal,intron-Proximal4.5428430.33759HepG2PCBP1
chr47431789274317920+intron-Distal4.0940312.35883HepG2HNRNPL
chr47431305674313063+intron-Distal4.68784400.00000HepG2PTBP1
chr47431786774317892+intron-Distal4.3941618.14479HepG2HNRNPL
chr47431306374313083+intron-Distal,intron-Proximal5.52465400.00000HepG2PTBP1
chr47431306474313129+intron-Distal,intron-Proximal5.28079400.00000HepG2PCBP2
chr47431306174313149+intron-Distal,intron-Proximal3.2641059.54852HepG2U2AF2
chr47431299474313035+intron-Distal5.0951387.63403HepG2PCBP2
chr47431695574316976+intron-Distal3.350986.93394HepG2U2AF2
chr47431300174313056+intron-Distal4.39773400.00000HepG2PTBP1
chr47431299374313061+intron-Distal3.2648335.83227HepG2U2AF2
chr47431299674313058+intron-Distal3.043313.80464HepG2HNRNPK
chr47431748374317496+intron-Distal3.1712110.75933HepG2HNRNPL
chr47431589174315929+intron-Proximal5.1000115.37586HepG2TIAL1
chr47431308374313122+intron-Proximal5.75283400.00000HepG2PTBP1
chr47431498074315051+intron-Proximal4.628263.05889HepG2SF3B4
chr47431087174310898+intron-Proximal4.6342116.86608HepG2TIAL1
chr47431089874310925+intron-Proximal4.6232215.93484HepG2TIAL1
chr47430299674303025+intron-Proximal4.8751518.07988HepG2TIAL1
chr47431312274313140+intron-Proximal5.3516247.93420HepG2PTBP1
chr47431087174310879+intron-Proximal3.6688111.83809HepG2RBM22
chr47431087974310902+intron-Proximal3.5377013.24325HepG2RBM22
chr47431647874316507+intron-Proximal4.2872323.80022HepG2PRPF8
chr47430283474302862+intron-Proximal3.8290131.21084HepG2SF3A3
chr47430384574303876+intron-Proximal3.7991057.76789HepG2SF3A3
chr47430917774309210+intron-Proximal5.8521139.28053HepG2PRPF8
chr47431500374315045+intron-Proximal4.3482350.76672HepG2SF3A3
chr47431651274316515+intron-Proximal4.5310110.42649HepG2TIAL1
chr47430795174307967+intron-Proximal3.7423020.94796HepG2RBM5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AFP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AFP is not available on ENCORE database.

  • 160 RBPs can affect the levels of AFP.  








The Knockdown/knockout RNA-Seq assay for AFP is not available on ENCORE database.





160 RBPs can affect the gene expression of AFP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AFPENSG00000081051.339629.93190118711.05710-1.5828061.4402057.98170HepG2AATF
AFPENSG00000081051.393962.47680223990.95700-1.25330133.88200131.31710HepG2ACO1
AFPENSG00000081051.363213.39260432823.89190-2.7755063.9808061.98270HepG2AKAP1
AFPENSG00000081051.3401681.48570303076.447100.406303.670402.48090HepG2AKAP8
AFPENSG00000081051.3199677.30620225030.32210-0.172402.607801.86000HepG2AKAP8L
AFPENSG00000081051.3372546.85670283740.253300.392805.921504.97860HepG2AUH
AFPENSG00000081051.3187106.7200098821.725200.9209015.9841013.56350HepG2BCCIP
AFPENSG00000081051.3222357.7846085873.372101.3725036.7431034.08150HepG2BCLAF1
AFPENSG00000081051.3238538.22630108624.180301.1348023.2164021.74770HepG2BOP1
AFPENSG00000081051.3322661.02630140505.163501.1993029.0314027.07600HepG2CALR
AFPENSG00000081051.371460.43380153529.80490-1.1033017.8061015.53770HepG2CCAR1
AFPENSG00000081051.3259758.20020223926.635800.214005.704704.81190HepG2CKAP4
AFPENSG00000081051.3116500.90410156452.88670-0.425402.353301.65150HepG2CNOT7
AFPENSG00000081051.3333806.8433099717.010401.7430073.5882070.87460HepG2CPSF6
AFPENSG00000081051.3311335.14280242296.082100.361605.148503.67290HepG2CPSF7
AFPENSG00000081051.3196759.48590105741.084200.8958042.7482039.23380HepG2YBX3
AFPENSG00000081051.3111279.72540176914.83010-0.6689027.4740025.88840HepG2CELF1
AFPENSG00000081051.3249229.44970207152.354400.266707.070705.83880HepG2DDX19B
AFPENSG00000081051.388266.93950131028.94280-0.569908.569407.44460HepG2DDX21
AFPENSG00000081051.3234849.89520128176.600100.8735028.0778025.58190HepG2DDX24
AFPENSG00000081051.369550.8956090915.86460-0.386502.848501.54230HepG2DDX27
AFPENSG00000081051.3138249.4792073613.139000.9091018.7239015.91200HepG2DDX28
AFPENSG00000081051.3263910.01690414634.28180-0.651806.930305.98230HepG2DDX3X
AFPENSG00000081051.377653.20650115643.93800-0.5746012.060009.67050HepG2DDX52
AFPENSG00000081051.3183130.56670113237.941500.693402.870801.87420HepG2DDX59
AFPENSG00000081051.3493810.79890251948.936900.9707023.2413020.81230HepG2DDX5
AFPENSG00000081051.3214929.35640100139.907701.1017035.0201032.32490HepG2DHX30
AFPENSG00000081051.3327674.66170214294.603100.6126028.2065026.61430HepG2DKC1
AFPENSG00000081051.3295569.41270103823.608701.5093067.3923064.64230HepG2DNAJC21
AFPENSG00000081051.3125953.47600102915.841900.291307.194206.21240HepG2DNAJC2
AFPENSG00000081051.398915.26300137980.15480-0.480206.069604.75170HepG2EEF2
AFPENSG00000081051.388822.68750115029.65230-0.373003.559902.29390HepG2EFTUD2
AFPENSG00000081051.3180978.36330120620.232600.585205.631004.06050HepG2AGO1
AFPENSG00000081051.3157305.72900223187.81680-0.504709.797307.78550HepG2EIF2S2
AFPENSG00000081051.350413.81970112010.68280-1.1517026.8892024.42370HepG2EIF3D
AFPENSG00000081051.3144892.04940123705.459200.228002.403201.39670HepG2EIF3G
AFPENSG00000081051.3285604.11710378422.91950-0.406003.348102.64610HepG2EIF4A3
AFPENSG00000081051.395853.99770368400.91780-1.9424041.4627039.01210HepG2EIF4B
AFPENSG00000081051.3306341.99290187670.593700.7068027.2701025.23390HepG2EIF4G1
AFPENSG00000081051.3304443.57800179776.545000.759908.171806.80540HepG2EIF4G2
AFPENSG00000081051.3369905.83230254862.315000.537308.540106.77730HepG2ESF1
AFPENSG00000081051.3250968.96420325757.40310-0.376305.682504.87270HepG2ETF1
AFPENSG00000081051.3157054.70450117202.221000.422204.484902.32470HepG2EXOSC9
AFPENSG00000081051.3124324.67510100106.673200.312504.615703.07310HepG2FAM120A
AFPENSG00000081051.3210900.19080124842.136300.7564018.4881016.07490HepG2FASTKD2
AFPENSG00000081051.349992.13940297075.99580-2.57110108.81490105.38220HepG2FIP1L1
AFPENSG00000081051.3201866.4710080874.109301.3196034.4549030.79930HepG2FKBP4
AFPENSG00000081051.3342088.3022099900.211501.7757013.5243011.36120HepG2FTO
AFPENSG00000081051.3178843.40520248351.60200-0.473707.778106.49580HepG2FUBP3
AFPENSG00000081051.367568.75150154085.85070-1.1893012.8984010.73630HepG2FUS
AFPENSG00000081051.392454.43470381738.51150-2.0458047.2303044.79420HepG2FXR1
AFPENSG00000081051.3288843.01150354157.55800-0.294102.120001.53480HepG2G3BP1
AFPENSG00000081051.367702.0786099731.50460-0.558808.077706.58850HepG2GEMIN5
AFPENSG00000081051.395213.68230135803.49570-0.512305.695104.22110HepG2GNB2L1
AFPENSG00000081051.3239560.36970147599.530300.698604.903803.01120HepG2HLTF
AFPENSG00000081051.3195121.32020132293.095700.560504.556402.76250HepG2HNRNPA0
AFPENSG00000081051.339624.49580104818.36670-1.4034054.7433052.65450HepG2HNRNPA1
AFPENSG00000081051.3275249.79690174824.307500.6547029.5092027.11510HepG2HNRNPA2B1
AFPENSG00000081051.380505.57640129186.44890-0.682307.388204.98090HepG2HNRNPAB
AFPENSG00000081051.3299371.51410118556.012901.33630113.17410110.13100HepG2HNRNPF
AFPENSG00000081051.3257460.80820358525.29750-0.477706.544705.50190HepG2HNRNPK
AFPENSG00000081051.3570769.04290107859.314902.40370121.87480118.83390HepG2HNRNPLL
AFPENSG00000081051.3121203.54800204977.67150-0.7580020.2331018.09760HepG2HNRNPM
AFPENSG00000081051.3128517.77400115822.980700.149901.987601.46420HepG2HNRNPU
AFPENSG00000081051.3304224.23660116743.018801.3817060.0127057.44820HepG2IGF2BP1
AFPENSG00000081051.384995.76970337795.30190-1.9907018.5503016.28910HepG2IGF2BP3
AFPENSG00000081051.3216245.69860152523.543100.503503.641302.09780HepG2ILF3
AFPENSG00000081051.3226455.10750204746.091500.145302.967101.91630HepG2KIF1C
AFPENSG00000081051.3118742.86360162077.88020-0.448803.563502.62040HepG2LARP4
AFPENSG00000081051.3104846.69000133026.66400-0.343403.651102.34470HepG2LARP7
AFPENSG00000081051.3214948.68190139705.876600.6215011.969409.60460HepG2LIN28B
AFPENSG00000081051.3201955.67700381871.45060-0.9190015.9248014.41320HepG2MAGOH
AFPENSG00000081051.3197696.71040384020.83300-0.9579016.1861014.75230HepG2MATR3
AFPENSG00000081051.385538.68860117230.38130-0.454702.809401.74880HepG2METAP2
AFPENSG00000081051.3191557.47050240446.56940-0.327904.311103.31430HepG2MSI2
AFPENSG00000081051.3356016.07300110037.849501.693808.935007.16910HepG2MTPAP
AFPENSG00000081051.3165092.17220393076.50760-1.2515023.3347021.61440HepG2NCBP2
AFPENSG00000081051.3222198.91500120287.620800.8853021.4075018.08900HepG2NIP7
AFPENSG00000081051.3117012.26040188629.34940-0.6889021.9863019.96850HepG2NOL12
AFPENSG00000081051.3343575.6583095649.658101.8447065.2450062.58520HepG2NSUN2
AFPENSG00000081051.3576451.33430301506.709700.9349024.0623019.97560HepG2NUP35
AFPENSG00000081051.3101041.68710142996.80820-0.501002.748401.86400HepG2PABPC1
AFPENSG00000081051.3451821.29240350105.434800.367903.347102.55770HepG2PABPC4
AFPENSG00000081051.394795.94040114641.16950-0.274205.134504.02840HepG2PARN
AFPENSG00000081051.3328823.44800374148.43370-0.186303.269402.61980HepG2PCBP1
AFPENSG00000081051.3291038.37930213004.157700.450205.180702.80970HepG2PES1
AFPENSG00000081051.3194736.59880127675.301800.608906.487604.02110HepG2PHF6
AFPENSG00000081051.3158728.79770103304.320600.6196020.4458018.57980HepG2PPIL4
AFPENSG00000081051.3462054.93820179858.231901.36110119.80230116.69010HepG2PRPF4
AFPENSG00000081051.356707.5567074965.10980-0.402703.742202.81970HepG2PRPF8
AFPENSG00000081051.3163635.98160380704.86400-1.21820104.06820101.94190HepG2PTBP1
AFPENSG00000081051.3242858.16210180062.988700.431506.618705.75030HepG2PUF60
AFPENSG00000081051.3122156.14400191144.53570-0.6459051.3898049.49240HepG2PUM1
AFPENSG00000081051.3509535.94800412323.760200.305305.075404.26870HepG2QKI
AFPENSG00000081051.356675.04360140789.16810-1.3128013.3823011.94060HepG2RAVER1
AFPENSG00000081051.3132987.39260272275.90740-1.0338011.2945010.39990HepG2RBM22
AFPENSG00000081051.388659.69820160404.94910-0.8554013.7740011.57450HepG2RBM27
AFPENSG00000081051.355504.88580130255.55140-1.2307030.0120027.00570HepG2RCC2
AFPENSG00000081051.3190281.89520423692.24730-1.1549089.9769088.00560HepG2NELFE
AFPENSG00000081051.3237787.82290394603.97420-0.7307042.5587040.71940HepG2RECQL
AFPENSG00000081051.3310607.84090127725.984201.2819036.6322034.80380HepG2RPLP0
AFPENSG00000081051.3301939.56470138261.738901.1268014.1828012.23440HepG2RPS10
AFPENSG00000081051.375547.73050108990.24880-0.5287010.278409.18260HepG2RPS19
AFPENSG00000081051.3240353.48580157098.868400.613405.655604.51010HepG2RPS3A
AFPENSG00000081051.386975.11360151010.06190-0.7960014.8470012.39410HepG2RPS5
AFPENSG00000081051.3141914.15410103143.719200.4603017.0726015.66820HepG2SAFB2
AFPENSG00000081051.3203713.75890147936.040500.461503.839702.30390HepG2SART3
AFPENSG00000081051.3406597.31530106750.074701.9293094.1289091.16060HepG2SF3B1
AFPENSG00000081051.3201053.37320396372.15220-0.9793074.2089071.96520HepG2SF3B4
AFPENSG00000081051.3128424.45480268280.30410-1.062803.456501.79100HepG2SFPQ
AFPENSG00000081051.3292702.22680172651.766400.7615064.6234062.26960HepG2SLBP
AFPENSG00000081051.3278118.52670137328.749501.018006.065103.82110HepG2SLTM
AFPENSG00000081051.352649.70740120280.02730-1.1919051.0111048.90800HepG2SMN1
AFPENSG00000081051.3391849.70400118781.527501.721909.552208.10990HepG2SNRNP70
AFPENSG00000081051.3202990.17450307530.91640-0.5993015.5279014.59430HepG2SRFBP1
AFPENSG00000081051.3149319.7852092544.436500.6901010.878308.08310HepG2SRP68
AFPENSG00000081051.3234274.54170413722.93720-0.8205054.6699053.16180HepG2SRSF1
AFPENSG00000081051.3274528.74310116480.162101.23680100.4638097.78330HepG2SRSF7
AFPENSG00000081051.3293464.23100336582.39500-0.197804.018503.37700HepG2SRSF9
AFPENSG00000081051.3499112.93700267018.899800.9023066.2497064.58730HepG2SSB
AFPENSG00000081051.3313748.95710198438.652200.660806.727304.91140HepG2STAU1
AFPENSG00000081051.3210620.31230131565.455900.678805.977204.22940HepG2SUB1
AFPENSG00000081051.3146881.21000202191.53680-0.4611022.4251020.92930HepG2SUCLG1
AFPENSG00000081051.3453718.13250332923.014400.446503.477001.97780HepG2SUGP2
AFPENSG00000081051.3366618.42160200610.825800.8698025.4042022.90650HepG2SUPT6H
AFPENSG00000081051.3145888.0381096725.091600.592804.151003.34740HepG2SUPV3L1
AFPENSG00000081051.3272533.17230371859.83310-0.4483011.8007010.76820HepG2TAF15
AFPENSG00000081051.3556588.62790105172.338102.40380138.87870135.41270HepG2TARDBP
AFPENSG00000081051.3505940.43400322944.784300.647603.211002.06360HepG2TBRG4
AFPENSG00000081051.393188.8244064833.961700.523306.457805.04430HepG2TFIP11
AFPENSG00000081051.3276998.05720341699.64230-0.302903.954302.96280HepG2TIA1
AFPENSG00000081051.369376.31030112532.41860-0.6978020.7520019.61800HepG2TIAL1
AFPENSG00000081051.389124.15290141334.91780-0.665205.736803.66440HepG2TRA2A
AFPENSG00000081051.3128776.34060113550.452700.181402.935302.35870HepG2TRIM56
AFPENSG00000081051.3388589.75000175913.460701.1433038.3879035.26200HepG2TUFM
AFPENSG00000081051.331123.1133057141.31740-0.8765016.2908014.48400HepG2UCHL5
AFPENSG00000081051.3561702.43960335609.477800.7429046.8746044.76800HepG2UPF1
AFPENSG00000081051.3138226.2412088581.478200.641906.402504.83210HepG2UPF2
AFPENSG00000081051.3391820.53980344954.057400.183702.712701.67360HepG2UTP18
AFPENSG00000081051.3206409.09450324016.63100-0.6506023.6241022.12920HepG2UTP3
AFPENSG00000081051.3690333.52180369105.136300.9032030.6474029.32880HepG2ZNF622
AFPENSG00000081051.3205401.23710140625.114600.546504.542702.85160HepG2ZRANB2
AFPENSG00000081051.330.68960246.00760-3.002905.413503.27950K562CEBPZ
AFPENSG00000081051.333.09560282.68790-3.094505.638603.87000K562DDX21
AFPENSG00000081051.355.5042023.032301.268803.056502.12960K562DKC1
AFPENSG00000081051.340.9616011.366401.849403.607202.55450K562EFTUD2
AFPENSG00000081051.3261.6997023.803203.4586037.1734033.67010K562EIF3H
AFPENSG00000081051.320.47580279.11790-3.768902.497001.68540K562FMR1
AFPENSG00000081051.314.09600236.66450-4.069502.741101.83050K562FTO
AFPENSG00000081051.314.63760261.64110-4.159802.811202.01010K562GPKOW
AFPENSG00000081051.3101.1372036.385801.474804.822703.82680K562GRSF1
AFPENSG00000081051.350.9289015.021501.761404.078502.93370K562HNRNPM
AFPENSG00000081051.314.53540223.62570-3.943402.638301.72920K562KRR1
AFPENSG00000081051.353.052201343.75940-4.6627070.0264067.06810K562MTPAP
AFPENSG00000081051.3156.290601492.85370-3.2558026.3428024.41340K562NSUN2
AFPENSG00000081051.331.920301377.60990-5.4315078.8913075.45860K562NUFIP2
AFPENSG00000081051.327.948407.080101.980803.056601.63420K562PCBP1
AFPENSG00000081051.385.3920011.060502.9486010.775909.28180K562PRPF8
AFPENSG00000081051.323.643507.028201.750102.346401.72780K562PTBP1
AFPENSG00000081051.3160.1719049.465301.6950010.811508.89960K562PUM2
AFPENSG00000081051.3119.9589021.227402.498404.523303.85240K562PUS1
AFPENSG00000081051.349.8691020.681201.269702.605402.02770K562RBM15
AFPENSG00000081051.3128.0982025.007802.356708.187205.75030K562SF1
AFPENSG00000081051.354.515401473.33880-4.7563067.7853064.72070K562SF3A3
AFPENSG00000081051.369.592101509.49210-4.4390066.4190063.37910K562SRPK2
AFPENSG00000081051.351.721406.892502.907607.712206.53750K562SRSF1
AFPENSG00000081051.321.840506.970101.647701.925401.32860K562TARDBP
AFPENSG00000081051.3100.058201582.91900-3.9837060.8422058.17490K562UPF1
AFPENSG00000081051.359.1313021.520201.458103.241801.80480K562UTP18
AFPENSG00000081051.317.886501354.43010-6.2427095.1072091.66450K562WDR3
AFPENSG00000081051.324.821701408.61310-5.8265088.5881085.51790K562WDR43
AFPENSG00000081051.318.3701073.35100-1.997506.758904.73450K562WRN
AFPENSG00000081051.381.8168029.299601.481404.024301.90080K562XPO5
AFPENSG00000081051.333.5915069.73110-1.053702.796701.92740K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AFP is not available on ENCORE database.





12 RBPs can affect the splicing of AFP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAFPENSG00000081051.3chr4+743107097431083974309063743091617431505174315184-0.058000.000000.00000excludedHepG2DDX59
SEAFPENSG00000081051.3chr4+743107097431083974309063743091617431505174315184-0.068000.000000.00000excludedHepG2BCLAF1
A3SSAFPENSG00000081051.3chr4+7430283874302928743029097430292874301879743020640.288000.000870.02364longerHepG2U2AF2
MXEAFPENSG00000081051.3chr4+7431811774318341743194817431961474316331743164707432095274321007-0.086000.000010.000592includedHepG2FTO
MXEAFPENSG00000081051.3chr4+74310709743108397431333074313393743090637430916174315051743151840.092000.000890.014511includedHepG2SFPQ
MXEAFPENSG00000081051.3chr4+7431070974310839743133307431339374309063743091617431505174315184-0.084000.000800.028142includedHepG2XRN2
MXEAFPENSG00000081051.3chr4+7431811774318341743194817431961474316331743164707432095274321007-0.169000.000000.000002includedHepG2U2AF2
MXEAFPENSG00000081051.3chr4+7430647574306530743090677430916174303842743040237431505174315184-0.293000.000120.013042includedHepG2QKI
MXEAFPENSG00000081051.3chr4+7430908274309161743131787431333074307994743081457431505174315184-0.085000.000110.006472includedHepG2SUPV3L1
MXEAFPENSG00000081051.3chr4+74306318743065307431317874313393743038907430402374315051743151840.083000.000740.052631includedHepG2G3BP1
MXEAFPENSG00000081051.3chr4+7431070974310839743133307431339374309063743091617431505174315184-0.094000.000190.037582includedHepG2XRCC6
MXEAFPENSG00000081051.3chr4+7431070974310839743131787431339374309063743091617431505174315184-0.102000.000050.014412includedHepG2XRCC6
MXEAFPENSG00000081051.3chr4+7431070974310839743133307431339374309063743091617431505174315184-0.075000.002720.061782includedHepG2TIAL1
MXEAFPENSG00000081051.3chr4+7431070974310839743131787431339374309063743091617431505174315184-0.080000.001640.044262includedHepG2TIAL1
MXEAFPENSG00000081051.3chr4+7431070974310839743133307431339374309063743091617431505174315184-0.111000.000010.004332includedHepG2SUB1
MXEAFPENSG00000081051.3chr4+7431070974310839743131787431339374309063743091617431505174315184-0.113000.000010.003212includedHepG2SUB1
MXEAFPENSG00000081051.3chr4+7430906374309161743131787431339374308012743081457431505174315184-0.090000.000200.044282includedHepG2SUB1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for AFP is not avaliable on ENCORE database.