XRRA1

General Information

Gene Name : XRRA1
Gene ID : ENSG00000166435.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: XRRA1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	XRRA1	ENSG00000166435.15	3.70	3.13	3.42	ENCSR000AEF
HepG2	XRRA1	ENSG00000166435.15	5.87	5.04	5.46	ENCSR985KAT
K562	XRRA1	ENSG00000166435.15	13.01	11.52	12.27	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for XRRA1 is not avaliable on ENCORE database.

Proteins bound to RNA

XRRA1 RNA is bound by 18 proteins.

eCLIP assay for XRRA1 is not avaliable on ENCORE database.

18 proteins are bound to XRRA1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	74618166	74618295	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.33206	9.07963	HepG2	PPIG
chr11	74618196	74618256	-	3'-UTR,5'-UTR,CDS,intron-Distal	4.11736	3.87995	K562	UCHL5
chr11	74660014	74660138	-	5'-UTR,intron-Distal,intron-Proximal	5.06099	4.97000	K562	DDX3X
chr11	74644821	74644919	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.56248	6.81103	HepG2	PPIG
chr11	74644786	74644927	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.23747	5.33133	K562	BUD13
chr11	74644833	74644920	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.11991	7.69747	K562	ZNF622
chr11	74641285	74641372	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.01595	3.02181	K562	PRPF8
chr11	74644842	74644919	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.07628	4.01763	HepG2	GRWD1
chr11	74647928	74647995	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.71311	4.82082	K562	ZNF622
chr11	74648062	74648114	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.22345	3.32039	HepG2	PPIG
chr11	74660048	74660126	-	5'-UTR,intron-Distal,intron-Proximal	3.35985	5.04943	K562	ZNF622
chr11	74617444	74617478	-	CDS,intron-Distal,intron-Proximal	3.44217	3.95301	K562	ZNF622
chr11	74617387	74617463	-	CDS,intron-Distal,intron-Proximal	3.29478	3.73423	K562	UCHL5
chr11	74617421	74617444	-	CDS,intron-Distal,intron-Proximal	3.52240	3.90826	K562	ZNF622
chr11	74617279	74617491	-	CDS,intron-Distal,intron-Proximal	3.27757	4.15299	K562	GRWD1
chr11	74617272	74617332	-	CDS,intron-Distal,intron-Proximal	4.10335	3.71613	K562	UCHL5
chr11	74564606	74564696	-	intron-Distal	3.69566	3.25521	K562	LIN28B
chr11	74568190	74568240	-	intron-Distal	3.19698	3.10961	HepG2	MATR3
chr11	74608598	74608648	-	intron-Distal	3.76106	3.04224	HepG2	SUGP2
chr11	74529227	74529342	-	intron-Distal	5.05405	4.40618	K562	PTBP1
chr11	74594564	74594634	-	intron-Distal	3.68358	5.30520	K562	UCHL5
chr11	74597446	74597520	-	intron-Distal	4.47063	5.37406	HepG2	HNRNPM
chr11	74597533	74597596	-	intron-Distal	3.82573	6.40701	K562	EXOSC5
chr11	74617024	74617090	-	intron-Distal	3.84516	5.98773	K562	KHSRP
chr11	74596672	74596742	-	intron-Distal	4.99081	6.41216	K562	EXOSC5
chr11	74578110	74578176	-	intron-Distal	3.95721	3.86809	HepG2	SUGP2
chr11	74626455	74626581	-	intron-Distal	3.92845	3.95960	K562	SAFB2
chr11	74609103	74609211	-	intron-Distal	6.37420	15.08232	K562	QKI
chr11	74597481	74597522	-	intron-Distal	5.36031	7.38693	K562	EXOSC5
chr11	74576984	74577094	-	intron-Distal	3.52597	5.06177	HepG2	SUGP2
chr11	74596687	74596807	-	intron-Distal	4.29042	4.02846	K562	HNRNPM
chr11	74617090	74617206	-	intron-Distal,intron-Proximal	4.39308	9.40001	K562	KHSRP
chr11	74579388	74579484	-	intron-Distal	4.29946	5.04879	HepG2	SUGP2
chr11	74608302	74608405	-	intron-Distal	4.27800	4.75572	K562	MATR3
chr11	74568193	74568308	-	intron-Distal	4.42206	5.04209	K562	MATR3
chr11	74607588	74607635	-	intron-Distal	3.04598	3.10883	HepG2	SUGP2
chr11	74654501	74654566	-	intron-Distal	5.30048	9.08128	K562	AGGF1
chr11	74597446	74597481	-	intron-Distal	4.24973	7.31365	K562	EXOSC5
chr11	74629923	74630077	-	intron-Distal	4.14486	3.84033	K562	SAFB2
chr11	74597459	74597516	-	intron-Distal	4.20365	3.78162	K562	HNRNPM
chr11	74556380	74556451	-	intron-Distal,intron-Proximal	3.01315	3.80334	HepG2	U2AF2
chr11	74608319	74608362	-	intron-Distal	3.12229	3.59523	HepG2	SUGP2
chr11	74607733	74607800	-	intron-Distal	4.62092	6.07481	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for XRRA1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for XRRA1 is not available on ENCORE database.
29 RBPs can affect the levels of XRRA1.

The Knockdown/knockout RNA-Seq assay for XRRA1 is not available on ENCORE database.

29 RBPs can affect the gene expression of XRRA1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
XRRA1	ENSG00000166435.11	271.78150	187.25630	0.53730	3.22230	2.57390	HepG2	ACO1
XRRA1	ENSG00000166435.11	257.93600	187.21920	0.46220	2.47130	1.83560	HepG2	CKAP4
XRRA1	ENSG00000166435.11	184.29000	266.07350	-0.52980	2.95260	2.19030	HepG2	DAZAP1
XRRA1	ENSG00000166435.11	181.44300	257.11690	-0.50290	1.90320	1.36590	HepG2	GPKOW
XRRA1	ENSG00000166435.11	162.49210	242.35700	-0.57680	3.15940	2.44240	HepG2	HNRNPL
XRRA1	ENSG00000166435.11	150.94850	217.57330	-0.52740	2.02270	1.37850	HepG2	NSUN2
XRRA1	ENSG00000166435.11	255.00900	164.56170	0.63180	3.79190	3.10470	HepG2	PCBP1
XRRA1	ENSG00000166435.11	190.09760	128.94500	0.55990	2.02680	1.33120	HepG2	PRPF8
XRRA1	ENSG00000166435.11	241.96440	167.45030	0.53100	2.89000	2.33350	HepG2	PTBP1
XRRA1	ENSG00000166435.11	325.57400	239.02720	0.44570	2.22060	1.74270	HepG2	RBM22
XRRA1	ENSG00000166435.11	279.48210	186.35400	0.58460	3.17530	2.60340	HepG2	NELFE
XRRA1	ENSG00000166435.11	238.52410	174.33270	0.45220	1.94850	1.43810	HepG2	SF3B4
XRRA1	ENSG00000166435.11	302.23140	181.96750	0.73190	4.91970	4.33560	HepG2	SRSF1
XRRA1	ENSG00000166435.11	111.19730	163.56490	-0.55670	2.08980	1.58990	HepG2	TAF15
XRRA1	ENSG00000166435.11	273.82480	203.28390	0.42970	2.23930	1.62610	HepG2	ZC3H8
XRRA1	ENSG00000166435.11	687.67420	860.36400	-0.32320	2.79430	2.22360	K562	AGGF1
XRRA1	ENSG00000166435.11	677.05410	895.24340	-0.40300	3.05850	2.37050	K562	AKAP8L
XRRA1	ENSG00000166435.11	1307.43050	922.64660	0.50280	7.68460	6.67250	K562	DDX47
XRRA1	ENSG00000166435.11	621.31360	358.22050	0.79440	4.38190	3.08910	K562	EIF3A
XRRA1	ENSG00000166435.11	741.34210	467.70440	0.66440	5.03700	3.59020	K562	EIF3D
XRRA1	ENSG00000166435.11	448.42010	330.42230	0.44040	2.91830	2.10150	K562	EIF3G
XRRA1	ENSG00000166435.11	743.24920	521.14530	0.51210	2.92680	1.96260	K562	KRR1
XRRA1	ENSG00000166435.11	398.97940	639.61440	-0.68090	2.75670	1.76800	K562	PABPN1
XRRA1	ENSG00000166435.11	1034.76690	800.80770	0.36970	2.29910	1.54130	K562	PCBP3
XRRA1	ENSG00000166435.11	775.59880	614.26030	0.33640	2.49090	1.73290	K562	POLR2G
XRRA1	ENSG00000166435.11	307.75370	434.15310	-0.49640	2.69270	1.80270	K562	PSIP1
XRRA1	ENSG00000166435.11	638.91540	476.20940	0.42390	3.31290	2.59300	K562	PTBP1
XRRA1	ENSG00000166435.11	691.06320	887.86650	-0.36150	2.16010	1.66810	K562	PUS1
XRRA1	ENSG00000166435.11	859.91480	580.43890	0.56690	4.08340	2.88700	K562	SF3B1
XRRA1	ENSG00000166435.11	574.86270	417.58050	0.46110	2.71300	1.78630	K562	TIAL1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for XRRA1 is not available on ENCORE database.

11 RBPs can affect the splicing of XRRA1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	XRRA1	ENSG00000166435.11	chr11	-	74651829	74651927			74647928	74648113	74656062	74656130	-0.31600	0.00397	0.06317	excluded	HepG2	U2AF1
SE	XRRA1	ENSG00000166435.11	chr11	-	74656062	74656130			74647928	74648113	74659972	74660125	-0.29200	0.00039	0.01493	excluded	K562	AKAP8L
SE	XRRA1	ENSG00000166435.11	chr11	-	74563033	74563127			74562132	74562248	74617283	74617501	-0.37700	0.00382	0.03727	excluded	K562	AQR
SE	XRRA1	ENSG00000166435.11	chr11	-	74574025	74574066			74562132	74562248	74617283	74617501	0.63500	0.00271	0.08273	included	K562	FXR1
SE	XRRA1	ENSG00000166435.11	chr11	-	74656062	74656130			74647928	74648113	74659972	74660125	-0.34500	0.00007	0.00189	excluded	K562	PUS1
SE	XRRA1	ENSG00000166435.11	chr11	-	74563033	74563127			74562132	74562248	74617283	74617501	-0.46100	0.00054	0.03212	excluded	K562	EFTUD2
SE	XRRA1	ENSG00000166435.11	chr11	-	74620933	74621057			74617884	74618318	74632258	74632344	0.50400	0.00010	0.01072	included	K562	HNRNPL
SE	XRRA1	ENSG00000166435.11	chr11	-	74656062	74656130			74647928	74648113	74659972	74660125	-0.26200	0.00226	0.06254	excluded	K562	UTP18
SE	XRRA1	ENSG00000166435.11	chr11	-	74644845	74644917			74632319	74632392	74647928	74648113	-0.29000	0.00043	0.01809	excluded	K562	UTP18
SE	XRRA1	ENSG00000166435.11	chr11	-	74656062	74656130			74647928	74648113	74659972	74660125	-0.30300	0.00280	0.05937	excluded	K562	RBM15
SE	XRRA1	ENSG00000166435.11	chr11	-	74563033	74563127			74562132	74562248	74617283	74617501	-0.58300	0.00004	0.00211	excluded	K562	RBM15
SE	XRRA1	ENSG00000166435.11	chr11	-	74656062	74656130			74647928	74648113	74659972	74660125	-0.29900	0.00026	0.00955	excluded	K562	AGGF1
A3SS	XRRA1	ENSG00000166435.11	chr11	-	74618189	74618334			74618189	74618318	74632258	74632392	0.09800	0.00919	0.04916	longer	K562	AQR
MXE	XRRA1	ENSG00000166435.11	chr11	-	74563078	74563127	74617283	74617501	74562132	74562248	74618189	74618318	-0.34900	0.00292	0.04406	2included	K562	SRSF1
MXE	XRRA1	ENSG00000166435.11	chr11	-	74563033	74563127	74617283	74617501	74562132	74562248	74618189	74618318	-0.37300	0.00024	0.00603	2included	K562	SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

XRRA1

General Information

Functions

Localization

Domains (AlphaFold: XRRA1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for XRRA1 is not avaliable on ENCORE database.

18 proteins are bound to XRRA1 RNA:

eCLIP assay for XRRA1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for XRRA1 is not available on ENCORE database.

29 RBPs can affect the gene expression of XRRA1 :

The Knockdown/knockout RNA-Seq assay for XRRA1 is not available on ENCORE database.

11 RBPs can affect the splicing of XRRA1 :

The Knockdown/knockout RNA-Seq assay for XRRA1 is not avaliable on ENCORE database.