WHAMM

General Information

Gene Name       : WHAMM
Gene ID             : ENSG00000156232.7
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: WHAMM)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878WHAMMENSG00000156232.75.152.013.58ENCSR000AEF
HepG2WHAMMENSG00000156232.72.573.332.95ENCSR985KAT
K562WHAMMENSG00000156232.72.912.722.82ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for WHAMM is not avaliable on ENCORE database.



Proteins bound to RNA
  • WHAMM RNA is bound by 5 proteins.  







eCLIP assay for WHAMM is not avaliable on ENCORE database.





5 proteins are bound to WHAMM RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr158349552583495594+CDS3.471834.22563K562UCHL5
chr158348675083486800+CDS4.205794.10264K562ZNF622
chr158349941883499465+CDS3.365833.63681K562RBM15
chr158349554983495603+CDS,intron-Proximal4.887075.59615K562ZNF622
chr158349185183491884+CDS,intron-Proximal3.906383.02457HepG2BCLAF1
chr158348668383486804+CDS4.266627.53358HepG2BCLAF1
chr158348550083485563+CDS4.183583.71613K562UCHL5
chr158349188483492019+CDS4.337627.53358HepG2BCLAF1
chr158348179683481874+CDS,intron-Proximal3.578166.26686K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for WHAMM is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for WHAMM is not available on ENCORE database.

  • 50 RBPs can affect the levels of WHAMM.  








The Knockdown/knockout RNA-Seq assay for WHAMM is not available on ENCORE database.





50 RBPs can affect the gene expression of WHAMM :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
WHAMMENSG00000156232.6390.69860281.414900.473303.217402.48640HepG2AUH
WHAMMENSG00000156232.6248.38770155.452800.676003.102602.14780HepG2BCLAF1
WHAMMENSG00000156232.6224.64550323.30990-0.525302.175201.31900HepG2CCAR1
WHAMMENSG00000156232.6358.78770265.435100.434703.037402.26670HepG2DAZAP1
WHAMMENSG00000156232.6383.71430250.873400.613003.970903.00690HepG2EIF4G2
WHAMMENSG00000156232.6231.92420370.06960-0.674103.675102.94620HepG2GPKOW
WHAMMENSG00000156232.6291.49260223.921900.380401.913301.30960HepG2HNRNPF
WHAMMENSG00000156232.6244.66620179.642600.445602.195601.64900HepG2HNRNPU
WHAMMENSG00000156232.6295.08190220.499400.420201.995201.37290HepG2IGF2BP1
WHAMMENSG00000156232.6432.31070270.770000.674904.299603.48530HepG2MAGOH
WHAMMENSG00000156232.6343.15260248.208900.467202.168601.52450HepG2PABPC4
WHAMMENSG00000156232.6383.44690237.508700.690905.915305.08120HepG2PCBP1
WHAMMENSG00000156232.6291.49520198.586700.553603.386002.53820HepG2PRPF4
WHAMMENSG00000156232.6390.44710186.704201.064305.749204.75620HepG2RAVER1
WHAMMENSG00000156232.6320.88780237.545300.433802.085001.49440HepG2RBM25
WHAMMENSG00000156232.6385.63660241.214600.676801.913001.33310HepG2RPLP0
WHAMMENSG00000156232.6567.05820295.528500.940107.152006.03250HepG2SF3A3
WHAMMENSG00000156232.6466.93810349.573100.417502.233901.59620HepG2SF3B1
WHAMMENSG00000156232.6125.70500186.56470-0.569602.683902.04710HepG2SMN1
WHAMMENSG00000156232.6297.87000219.994900.437102.474101.81180HepG2SRSF7
WHAMMENSG00000156232.6282.30960213.662000.401802.052201.56230HepG2SRSF9
WHAMMENSG00000156232.6428.36270264.824700.693706.761506.02720HepG2SSB
WHAMMENSG00000156232.6291.19280216.910100.424802.071501.34530HepG2TIA1
WHAMMENSG00000156232.6456.32820254.097300.844606.406305.46820HepG2U2AF1
WHAMMENSG00000156232.6398.94960288.247100.468803.635403.03180HepG2ZNF622
WHAMMENSG00000156232.6529.66310351.454400.591604.754603.89140K562AKAP8L
WHAMMENSG00000156232.61660.04530390.861802.0864061.5463059.14020K562AQR
WHAMMENSG00000156232.6496.28720384.378700.368502.111501.41740K562CPSF6
WHAMMENSG00000156232.6599.97860409.528600.550805.780104.88930K562DDX47
WHAMMENSG00000156232.6395.88230208.910900.922106.023804.13030K562EEF2
WHAMMENSG00000156232.6325.71820201.850600.690204.131602.99810K562EFTUD2
WHAMMENSG00000156232.6362.93330216.123700.747703.447202.28160K562EIF3D
WHAMMENSG00000156232.6529.27280237.364601.1568014.2356012.30570K562EIF4A3
WHAMMENSG00000156232.6578.51800435.936100.408102.862301.90790K562EIF4G2
WHAMMENSG00000156232.6563.42580391.093300.526602.209101.44280K562FMR1
WHAMMENSG00000156232.6346.77440248.134100.482802.954201.77480K562GLRX3
WHAMMENSG00000156232.6331.72440248.913000.414201.868401.36670K562HNRNPC
WHAMMENSG00000156232.6427.20430300.018200.509803.705202.67120K562HNRNPU
WHAMMENSG00000156232.6543.37710372.965400.542804.208603.16220K562KIF1C
WHAMMENSG00000156232.6392.65270260.880200.589804.551703.53630K562MTPAP
WHAMMENSG00000156232.6536.23650292.861300.872606.276004.74550K562NAA15
WHAMMENSG00000156232.6398.29530289.863700.458403.314502.50430K562NSUN2
WHAMMENSG00000156232.6365.34400252.686200.531803.020702.00070K562PCBP2
WHAMMENSG00000156232.6323.32730196.423800.718904.047603.13890K562PRPF8
WHAMMENSG00000156232.6764.62080475.630200.684806.297205.06960K562PUF60
WHAMMENSG00000156232.6599.46950348.514700.782406.840706.03120K562PUS1
WHAMMENSG00000156232.6548.63160339.601300.691907.141206.21840K562RBM15
WHAMMENSG00000156232.6548.88600349.014500.653104.179302.96470K562SF3B1
WHAMMENSG00000156232.6542.30900313.528600.790402.792901.55800K562SNRNP200
WHAMMENSG00000156232.6311.82610221.889700.490802.092301.39430K562U2AF2
WHAMMENSG00000156232.6636.73700353.389600.849304.463702.67790K562UTP18
WHAMMENSG00000156232.6433.03320262.988600.719406.053304.72930K562WDR3
WHAMMENSG00000156232.6383.38790273.475600.487303.601502.64470K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for WHAMM is not available on ENCORE database.





1 RBPs can affect the splicing of WHAMM :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSWHAMMENSG00000156232.6chr15+8349513983495366834951618349536683491851834920390.248000.000030.00030longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for WHAMM is not avaliable on ENCORE database.