TMEM5

General Information

Gene Name       : TMEM5
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM5 RNA is bound by 2 proteins.  







eCLIP assay for TMEM5 is not avaliable on ENCORE database.





2 proteins are bound to TMEM5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr126417368164173793+5'-UTR,CDS3.580516.73521K562DDX3X
chr126419208264192194+intron-Distal3.130663.00914HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM5 is not available on ENCORE database.

  • 53 RBPs can affect the levels of TMEM5.  








The Knockdown/knockout RNA-Seq assay for TMEM5 is not available on ENCORE database.





53 RBPs can affect the gene expression of TMEM5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM5ENSG00000118600.7252.50590182.225500.470502.028801.36120HepG2CALR
TMEM5ENSG00000118600.7268.77400193.238500.475902.204501.40020HepG2DDX24
TMEM5ENSG00000118600.7180.50660325.03120-0.848504.841104.04490HepG2DDX6
TMEM5ENSG00000118600.765.28150191.50110-1.5526011.7071010.34260HepG2DNAJC21
TMEM5ENSG00000118600.7205.41240312.51620-0.605402.899302.29270HepG2EIF2S1
TMEM5ENSG00000118600.783.10800159.45790-0.940102.307401.38700HepG2FTO
TMEM5ENSG00000118600.7142.95260348.40650-1.2852010.915109.62900HepG2FXR1
TMEM5ENSG00000118600.7205.50570323.24110-0.653403.460802.72030HepG2G3BP1
TMEM5ENSG00000118600.7247.05360343.10570-0.473802.179101.39400HepG2G3BP2
TMEM5ENSG00000118600.7165.33580269.88250-0.706904.568203.67360HepG2HNRNPF
TMEM5ENSG00000118600.7205.21950327.21050-0.673103.708902.90850HepG2HNRNPK
TMEM5ENSG00000118600.7205.99110308.50630-0.582702.304201.68110HepG2HNRNPL
TMEM5ENSG00000118600.7178.96360265.75850-0.570403.003602.25150HepG2IGF2BP1
TMEM5ENSG00000118600.7127.65280308.29920-1.272104.847703.55980HepG2IGF2BP3
TMEM5ENSG00000118600.7159.73290218.21490-0.450102.384201.69670HepG2ILF2
TMEM5ENSG00000118600.7181.63480330.46950-0.863504.786203.43110HepG2KHSRP
TMEM5ENSG00000118600.7469.60360350.491700.422001.956501.42150HepG2MATR3
TMEM5ENSG00000118600.7119.64280188.51380-0.655902.447901.68510HepG2MSI2
TMEM5ENSG00000118600.7259.02270358.75860-0.469902.059301.50890HepG2NCBP2
TMEM5ENSG00000118600.799.20400180.31720-0.862103.196602.01760HepG2NONO
TMEM5ENSG00000118600.7193.06150304.09990-0.655504.449403.79150HepG2PTBP1
TMEM5ENSG00000118600.7144.62480329.33740-1.1873010.958509.83510HepG2QKI
TMEM5ENSG00000118600.7103.40990298.89880-1.5313014.7848013.29450HepG2RBM25
TMEM5ENSG00000118600.756.35630169.38330-1.587604.214302.15610HepG2RBM39
TMEM5ENSG00000118600.7225.86840338.43000-0.583403.650403.04570HepG2NELFE
TMEM5ENSG00000118600.7204.60400315.20890-0.623504.023603.29870HepG2RECQL
TMEM5ENSG00000118600.7207.00790290.71040-0.489902.178001.56280HepG2RPLP0
TMEM5ENSG00000118600.7245.85890149.681500.715802.699801.92060HepG2RRP9
TMEM5ENSG00000118600.7111.48060170.45170-0.612602.056701.44310HepG2SF3B1
TMEM5ENSG00000118600.7116.27690183.40490-0.657502.193801.31410HepG2SRSF3
TMEM5ENSG00000118600.7162.65710265.14620-0.705004.435603.58690HepG2SRSF7
TMEM5ENSG00000118600.7194.53480268.85310-0.466802.492501.96260HepG2SRSF9
TMEM5ENSG00000118600.7294.64720197.249800.578903.506402.84710HepG2UTP3
TMEM5ENSG00000118600.7410.68170224.698000.8699010.166909.28450HepG2ZNF622
TMEM5ENSG00000118600.7182.45480305.01160-0.741305.144904.41090K562AGGF1
TMEM5ENSG00000118600.7215.27730317.37580-0.560003.051202.36440K562AKAP8L
TMEM5ENSG00000118600.7794.23300538.797400.559705.220503.43750K562APOBEC3C
TMEM5ENSG00000118600.7349.62950562.19540-0.685202.187701.65590K562AQR
TMEM5ENSG00000118600.7530.63730398.411300.413403.267202.56820K562DDX47
TMEM5ENSG00000118600.7283.65190179.143700.662903.729902.78190K562EIF4A3
TMEM5ENSG00000118600.7222.28340356.67910-0.682204.428903.33810K562FIP1L1
TMEM5ENSG00000118600.7337.24830186.299400.856106.769105.88270K562FXR1
TMEM5ENSG00000118600.7829.61270612.264700.438203.502302.65480K562GRSF1
TMEM5ENSG00000118600.7411.10910293.378100.486702.448201.57560K562HNRNPM
TMEM5ENSG00000118600.7677.01050483.574900.485303.450402.56400K562HSPD1
TMEM5ENSG00000118600.7207.75760336.82420-0.697104.833103.68630K562KIF1C
TMEM5ENSG00000118600.7406.03230264.966500.615704.699703.59770K562MAGOH
TMEM5ENSG00000118600.7276.03560377.32690-0.451002.351101.52330K562MBNL1
TMEM5ENSG00000118600.7341.03440257.421400.405702.206401.60260K562PTBP1
TMEM5ENSG00000118600.71055.47570666.215900.663707.699906.33350K562PUF60
TMEM5ENSG00000118600.7171.95800314.76850-0.872205.824605.07210K562PUS1
TMEM5ENSG00000118600.7177.72410306.67890-0.787105.514704.70290K562RBM15
TMEM5ENSG00000118600.794.09430209.59700-1.155403.001901.73230K562SF1
TMEM5ENSG00000118600.7345.20330215.440100.680104.866703.77060K562SYNCRIP
TMEM5ENSG00000118600.7111.61350209.95790-0.911604.417403.21460K562TIAL1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM5 is not available on ENCORE database.





11 RBPs can affect the splicing of TMEM5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMEM5ENSG00000118600.7chr12+641763206417648464174798641749546417874964178852-0.167000.001340.04648excludedK562PRPF8
SETMEM5ENSG00000118600.7chr12+6417632064176484641747986417495464178749641788520.252000.000060.00708includedHepG2RBM22
SETMEM5ENSG00000118600.7chr12+6417632064176484641747986417495464178749641788520.440000.000000.00003includedK562MATR3
SETMEM5ENSG00000118600.7chr12+6418366764183711641787496417885264195870641959830.399000.000000.00004includedHepG2U2AF1
SETMEM5ENSG00000118600.7chr12+6418366764183711641787496417885264195870641959830.488000.000000.00000includedHepG2U2AF2
SETMEM5ENSG00000118600.7chr12+6417632064176484641747986417495464178749641788520.152000.010100.08191includedK562AQR
SETMEM5ENSG00000118600.7chr12+6418366764183711641787496417885264195870641959830.076000.002520.02659includedK562AQR
SETMEM5ENSG00000118600.7chr12+641763206417648464174798641749546417874964178852-0.207000.003320.09563excludedK562FXR1
SETMEM5ENSG00000118600.7chr12+6418366764183711641787496417885264195870641959830.173000.000280.02814includedK562SUPV3L1
SETMEM5ENSG00000118600.7chr12+6418360064183711641787496417885264195870641959830.281000.000000.00003includedHepG2SFPQ
SETMEM5ENSG00000118600.7chr12+641763206417648464174798641749546417874964178852-0.183000.002170.08908excludedK562EFTUD2
SETMEM5ENSG00000118600.7chr12+6417632064176484641747986417495464178749641788520.475000.000000.00000includedHepG2MATR3
SETMEM5ENSG00000118600.7chr12+6418366764183711641787496417885264195870641959830.170000.002260.04363includedK562U2AF1
SETMEM5ENSG00000118600.7chr12+6418359364183711641787496417885264195870641959830.116000.000750.01517includedK562HNRNPC
A3SSTMEM5ENSG00000118600.7chr12+6419582964195983641958706419598364178749641788520.089000.000010.00012longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMEM5 is not avaliable on ENCORE database.