SNUPN

General Information

Gene Name       : SNUPN
Gene ID             : ENSG00000169371.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SNUPN)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNUPNENSG00000169371.1319.0521.0620.05ENCSR000AEF
HepG2SNUPNENSG00000169371.1310.7213.9212.32ENCSR985KAT
K562SNUPNENSG00000169371.1329.5230.2829.90ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq BGKcLV33-59,BGKcLV33-60SNUPNK562Released   CRISPRKD% = band isn't on the position,






  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
SNUPNK562CRISPRBGKcLV33-59,BGKcLV33-60BGKcLV33-1,BGKcLV33-2band isn't on the position,ReleasedENCODE4
SNUPNK562CRISPRBGKcLV33-63,BGKcLV33-64BGKcLV33-1,BGKcLV33-20.0,0.0NotSatisfiedENCODE4
SNUPNK562CRISPRBGKcLV35-69,BGKcLV35-70BGKcLV35-1,BGKcLV35-20.0,0.0NotSatisfiedENCORE2
SNUPNK562CRISPRBGKcLV46-91,BGKcLV46-92BGKcLV46-1,BGKcLV46-239.3,43.4ExperimentedENCORE2
SNUPNK562CRISPRBGKcLV46-93,BGKcLV46-94BGKcLV46-1,BGKcLV46-235.3,33.5ExperimentedENCORE2
SNUPNHepG2CRISPRBGHcLV31-59,BGHcLV31-60BGHcLV31-1,BGHcLV31-20.0,0.0NotSatisfiedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNUPN is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNUPN RNA is bound by 6 proteins.  







eCLIP assay for SNUPN is not avaliable on ENCORE database.





6 proteins are bound to SNUPN RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr157589042975890513-3'-UTR,intron-Distal,intron-Proximal4.635037.56405K562PUM2
chr157589046275890540-3'-UTR,intron-Distal,intron-Proximal4.098513.04123K562LIN28B
chr157591745575917553-5'-UTR,intron-Distal,intron-Proximal5.832339.13283K562GTF2F1
chr157591747575917559-5'-UTR,intron-Distal,intron-Proximal3.588673.79474HepG2FAM120A
chr157591747275917536-5'-UTR,intron-Distal,intron-Proximal4.428524.46951K562FAM120A
chr157591330675913392-CDS,intron-Distal,intron-Proximal3.182153.50044K562YBX3
chr157589086075890983-CDS,intron-Distal3.299283.69775K562YBX3
chr157590975475909861-CDS,intron-Distal,intron-Proximal3.892296.11943K562UCHL5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNUPN is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNUPN is not available on ENCORE database.

  • 24 RBPs can affect the levels of SNUPN.  








The Knockdown/knockout RNA-Seq assay for SNUPN is not available on ENCORE database.





24 RBPs can affect the gene expression of SNUPN :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNUPNENSG00000169371.9374.22020177.458901.076307.306206.48630HepG2AKAP1
SNUPNENSG00000169371.9216.74950146.840700.561702.208901.50270HepG2ASCC1
SNUPNENSG00000169371.9180.61470250.11740-0.469702.142001.52430HepG2AUH
SNUPNENSG00000169371.9253.42310139.506100.861104.742703.74530HepG2CIRBP
SNUPNENSG00000169371.980.84580130.51540-0.691002.048001.49220HepG2GPKOW
SNUPNENSG00000169371.9124.07890225.50210-0.861904.576303.83230HepG2PUF60
SNUPNENSG00000169371.998.31320192.46780-0.969204.992804.11100HepG2RPLP0
SNUPNENSG00000169371.983.09040137.16750-0.723201.974201.31910HepG2SNRNP70
SNUPNENSG00000169371.9256.80460154.911700.729104.331803.77230HepG2SRSF1
SNUPNENSG00000169371.975.89020121.45480-0.678402.044801.40940HepG2TARDBP
SNUPNENSG00000169371.9202.27580131.607500.620002.044401.49540HepG2U2AF1
SNUPNENSG00000169371.9147.49210233.23380-0.661102.171401.43540HepG2UBE2L3
SNUPNENSG00000169371.996.46350142.26950-0.560602.118601.62170HepG2ZNF622
SNUPNENSG00000169371.9582.88150410.100600.507104.543203.79470K562FXR1
SNUPNENSG00000169371.9517.73990366.133600.499802.891101.93630K562HNRNPM
SNUPNENSG00000169371.9523.83700660.59970-0.334702.440001.60070K562HNRNPU
SNUPNENSG00000169371.9770.31400990.83560-0.363202.433401.37690K562MSI2
SNUPNENSG00000169371.9389.26900487.31100-0.324102.149401.43130K562MTPAP
SNUPNENSG00000169371.9355.35320514.39400-0.533603.271302.36610K562PCBP3
SNUPNENSG00000169371.9292.03760394.55330-0.434102.436201.68720K562POLR2G
SNUPNENSG00000169371.9240.58160476.88690-0.987109.201808.26000K562PUS1
SNUPNENSG00000169371.9362.35440464.66100-0.358801.982201.46520K562RBM15
SNUPNENSG00000169371.9312.99250428.17640-0.452102.100901.39380K562RPS19
SNUPNENSG00000169371.9532.89310395.753400.429103.036902.17350K562SYNCRIP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNUPN is not available on ENCORE database.





5 RBPs can affect the splicing of SNUPN :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNUPNENSG00000169371.9chr15-759146827591483175913234759133977591800675918135-0.315000.002330.04123excludedHepG2U2AF1
SESNUPNENSG00000169371.9chr15-7591468275914831759132347591339775918006759181350.582000.000190.04835includedHepG2DKC1
SESNUPNENSG00000169371.9chr15-7589916375899258758975397589756875899556758996540.053000.001950.02146includedK562AQR
SESNUPNENSG00000169371.9chr15-759146827591483175913234759133977591800675918135-0.135000.001490.05369excludedK562FXR1
SESNUPNENSG00000169371.9chr15-759146827591483175913234759133977591800675918135-0.485000.001110.07247excludedHepG2TIAL1
A3SSSNUPNENSG00000169371.9chr15-7589084875891084758908487589102275893478758935590.114000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNUPN is not avaliable on ENCORE database.