SH3PXD2B

General Information

Gene Name       : SH3PXD2B
Gene ID             : ENSG00000174705.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SH3PXD2B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SH3PXD2BENSG00000174705.120.280.410.34ENCSR000AEF
HepG2SH3PXD2BENSG00000174705.123.922.763.34ENCSR985KAT
K562SH3PXD2BENSG00000174705.120.200.130.17ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SH3PXD2B is not avaliable on ENCORE database.



Proteins bound to RNA
  • SH3PXD2B RNA is bound by 3 proteins.  







eCLIP assay for SH3PXD2B is not avaliable on ENCORE database.





3 proteins are bound to SH3PXD2B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5171880960171881097-intron-Distal5.4428910.66887HepG2PCBP2
chr5171771900171772055-intron-Distal4.196983.96879HepG2MATR3
chr5171771883171772004-intron-Distal4.602375.04769HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SH3PXD2B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SH3PXD2B is not available on ENCORE database.

  • 58 RBPs can affect the levels of SH3PXD2B.  








The Knockdown/knockout RNA-Seq assay for SH3PXD2B is not available on ENCORE database.





58 RBPs can affect the gene expression of SH3PXD2B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SH3PXD2BENSG00000174705.7649.61690521.477300.316902.593902.00210HepG2ACO1
SH3PXD2BENSG00000174705.71024.24100719.426900.509506.988005.97730HepG2AUH
SH3PXD2BENSG00000174705.7194.05290530.63110-1.451304.468403.72900HepG2BOP1
SH3PXD2BENSG00000174705.7255.37960405.29870-0.666304.137203.20310HepG2CIRBP
SH3PXD2BENSG00000174705.7384.20600521.38490-0.440503.944103.17690HepG2CKAP4
SH3PXD2BENSG00000174705.7172.08630439.12550-1.3515010.182408.74610HepG2CNOT7
SH3PXD2BENSG00000174705.7138.90890230.32310-0.729503.816702.57300HepG2CSTF2
SH3PXD2BENSG00000174705.7833.33560465.804600.8391014.3153013.07700HepG2CELF1
SH3PXD2BENSG00000174705.7398.05160500.81190-0.331302.357801.66560HepG2DAZAP1
SH3PXD2BENSG00000174705.7367.61720493.86920-0.425902.147201.58940HepG2DDX3X
SH3PXD2BENSG00000174705.7814.40480366.697201.1511011.7251010.26460HepG2DDX55
SH3PXD2BENSG00000174705.7679.47040424.308200.679204.924304.12110HepG2DDX6
SH3PXD2BENSG00000174705.7322.93860498.91790-0.627505.983105.05920HepG2DKC1
SH3PXD2BENSG00000174705.7566.40220407.834000.473702.767002.17320HepG2EIF2S1
SH3PXD2BENSG00000174705.7620.06390450.673600.460202.580401.96220HepG2EIF4A3
SH3PXD2BENSG00000174705.7601.29600438.852900.454202.052701.45590HepG2EIF4B
SH3PXD2BENSG00000174705.7617.94870825.97980-0.418604.404603.67730HepG2ETF1
SH3PXD2BENSG00000174705.7743.42370509.595000.544705.044503.92020HepG2EWSR1
SH3PXD2BENSG00000174705.7852.37340653.048900.384202.209101.51780HepG2FIP1L1
SH3PXD2BENSG00000174705.7238.92430487.94750-1.030202.939101.89100HepG2FTO
SH3PXD2BENSG00000174705.7631.80310454.804100.474102.904602.19450HepG2FXR1
SH3PXD2BENSG00000174705.7236.64520421.84840-0.834006.029605.06480HepG2G3BP1
SH3PXD2BENSG00000174705.7615.41680497.874200.305702.325901.42490HepG2HDGF
SH3PXD2BENSG00000174705.7290.63030417.67950-0.523202.993002.32310HepG2HNRNPA1
SH3PXD2BENSG00000174705.7324.53020461.51330-0.508004.217303.48220HepG2HNRNPU
SH3PXD2BENSG00000174705.7524.56130668.71790-0.350302.706601.99080HepG2IGF2BP1
SH3PXD2BENSG00000174705.7301.37750454.96330-0.594203.538502.79580HepG2MAGOH
SH3PXD2BENSG00000174705.7662.75350457.494500.534603.242102.56330HepG2MATR3
SH3PXD2BENSG00000174705.7335.97360468.25870-0.479002.522401.91610HepG2NCBP2
SH3PXD2BENSG00000174705.7323.06900479.36930-0.569302.812301.76440HepG2PCBP2
SH3PXD2BENSG00000174705.7655.40710474.065900.467203.640102.96820HepG2PUF60
SH3PXD2BENSG00000174705.7283.98600531.16150-0.9033012.8044011.64430HepG2PUS1
SH3PXD2BENSG00000174705.7931.18990630.659700.562106.229205.00790HepG2RBM15
SH3PXD2BENSG00000174705.71555.45030690.370101.1718015.3580014.33780HepG2RBM22
SH3PXD2BENSG00000174705.7609.39100476.180700.355802.568802.04450HepG2NELFE
SH3PXD2BENSG00000174705.7566.97010731.67450-0.367902.680502.00560HepG2RPLP0
SH3PXD2BENSG00000174705.7275.04940454.48240-0.724503.965302.83630HepG2RPS10
SH3PXD2BENSG00000174705.7498.49160343.838400.535703.742203.03830HepG2RPS19
SH3PXD2BENSG00000174705.7597.77630407.772200.551703.442102.24140HepG2RPS5
SH3PXD2BENSG00000174705.7325.62210411.00210-0.335902.074601.50390HepG2SAFB2
SH3PXD2BENSG00000174705.7292.81920521.78580-0.833402.199601.56530HepG2SF3B1
SH3PXD2BENSG00000174705.7304.35110472.01840-0.633103.593702.48780HepG2SMNDC1
SH3PXD2BENSG00000174705.7184.88250580.55930-1.650804.406903.41090HepG2SNRNP70
SH3PXD2BENSG00000174705.71287.10770779.754500.7229015.2166014.29080HepG2SRFBP1
SH3PXD2BENSG00000174705.7507.43680667.22470-0.394903.812603.01470HepG2SRSF7
SH3PXD2BENSG00000174705.7422.35250677.02340-0.680808.946108.12580HepG2SSB
SH3PXD2BENSG00000174705.7269.87110383.57960-0.507302.453701.42640HepG2STIP1
SH3PXD2BENSG00000174705.7967.32730532.330300.861606.258205.39190HepG2SUCLG1
SH3PXD2BENSG00000174705.7251.78010365.01760-0.535802.722002.04980HepG2SUPV3L1
SH3PXD2BENSG00000174705.7359.64320244.644000.555802.395701.46100HepG2TFIP11
SH3PXD2BENSG00000174705.7291.94890448.47220-0.619305.064204.42960HepG2TIAL1
SH3PXD2BENSG00000174705.7301.88680558.69040-0.888007.922206.86370HepG2U2AF1
SH3PXD2BENSG00000174705.7347.71900215.610900.689404.083903.16160HepG2UCHL5
SH3PXD2BENSG00000174705.7216.55340334.18170-0.625902.979301.93700HepG2UPF2
SH3PXD2BENSG00000174705.7484.96600616.89660-0.347102.640201.61180HepG2UTP18
SH3PXD2BENSG00000174705.7473.54060579.45690-0.291201.921901.40400HepG2UTP3
SH3PXD2BENSG00000174705.7247.00830359.32050-0.540702.871302.13230HepG2XRN2
SH3PXD2BENSG00000174705.7512.85610660.09140-0.364103.489502.89530HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SH3PXD2B is not available on ENCORE database.






No RBPs affect the alternative splcing events of SH3PXD2B on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SH3PXD2B is not avaliable on ENCORE database.