SALL4

General Information

Gene Name       : SALL4
Gene ID             : ENSG00000101115.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SALL4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SALL4ENSG00000101115.120.000.000.00ENCSR000AEF
HepG2SALL4ENSG00000101115.121.261.181.22ENCSR985KAT
K562SALL4ENSG00000101115.120.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
SALL4Ribo-STAMP-293TshRNABGRSLV02-43,BGRSLV02-44BGRSLV02-1,BGRSLV02-2NotSatisfiedENCORE2
SALL4Ribo-STAMP-293TshRNABGRSLV03-41,BGRSLV03-42BGRSLV03-1,BGRSLV03-2NotSatisfiedENCORE2
SALL4Ribo-STAMP-293TshRNABGRSLV09-39,BGRSLV09-40BGRSLV09-1,BGRSLV09-2NotSatisfiedENCORE2
SALL4Ribo-STAMP-293TshRNABGRSLV09-41,BGRSLV09-42BGRSLV09-1,BGRSLV09-2NotSatisfiedENCORE2
SALL4Ribo-STAMP-293TshRNABGRSDLV02-85,BGRSDLV02-86BGRSDLV02-1,BGRSDLV02-2NotSatisfiedENCORE2
SALL4Ribo-STAMP-293TshRNABGRSDLV02-87dox,BGRSDLV02-88doxBGRSDLV02-1,BGRSDLV02-2NotSatisfiedENCORE2
SALL4Ribo-STAMP-293TshRNABGRSDLV04-29,BGRSDLV04-30BGRSDLV04-1,BGRSDLV04-2NotSatisfiedENCORE2
SALL4Ribo-STAMP-293TshRNABGRSDLV04-31dox,BGRSDLV04-32doxBGRSDLV04-1,BGRSDLV04-2NotSatisfiedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SALL4 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on SALL4 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for SALL4 is not avaliable on ENCORE database.






NO known proteins are bound to SALL4 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for SALL4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SALL4 is not available on ENCORE database.

  • 64 RBPs can affect the levels of SALL4.  








The Knockdown/knockout RNA-Seq assay for SALL4 is not available on ENCORE database.





64 RBPs can affect the gene expression of SALL4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SALL4ENSG00000101115.843.86570104.15590-1.247603.361102.32680HepG2ABCF1
SALL4ENSG00000101115.851.13580107.76180-1.075404.445703.71040HepG2ACO1
SALL4ENSG00000101115.861.08830136.98790-1.165104.467403.21310HepG2CCAR1
SALL4ENSG00000101115.831.02640138.37340-2.1570010.275508.86960HepG2CIRBP
SALL4ENSG00000101115.8383.74360107.762301.8322029.6085027.95690HepG2CKAP4
SALL4ENSG00000101115.8288.55970197.261400.548701.957301.31930HepG2CNOT7
SALL4ENSG00000101115.8129.7924050.056401.374505.955204.98100HepG2CPSF6
SALL4ENSG00000101115.812.3329040.84900-1.727803.490202.29480HepG2CSTF2
SALL4ENSG00000101115.855.66260154.00050-1.468208.720207.69950HepG2CELF1
SALL4ENSG00000101115.8236.04840165.578500.511502.868802.11490HepG2DAZAP1
SALL4ENSG00000101115.850.7731092.22760-0.861102.390701.75470HepG2DDX21
SALL4ENSG00000101115.8218.07620144.905200.589602.134201.58460HepG2DDX6
SALL4ENSG00000101115.832.32940103.10500-1.673207.244706.24530HepG2DKC1
SALL4ENSG00000101115.8114.1401073.203500.640702.051501.43580HepG2DNAJC21
SALL4ENSG00000101115.8143.9986072.579200.988305.325604.46460HepG2DNAJC2
SALL4ENSG00000101115.8336.59260139.225001.2735010.220909.12380HepG2EIF2S1
SALL4ENSG00000101115.844.2531087.14790-0.977702.875701.77510HepG2EIF3G
SALL4ENSG00000101115.877.97710153.82320-0.980203.999403.23470HepG2EIF4A3
SALL4ENSG00000101115.873.46510154.91610-1.076404.719202.56570HepG2FMR1
SALL4ENSG00000101115.8105.1316050.145001.067902.217101.31630HepG2FTO
SALL4ENSG00000101115.888.48560152.96840-0.789702.916201.99870HepG2G3BP2
SALL4ENSG00000101115.859.00360106.76050-0.855502.871901.83290HepG2GNB2L1
SALL4ENSG00000101115.8389.85660182.645901.093807.513305.69910HepG2GRSF1
SALL4ENSG00000101115.8341.02500150.826301.1769014.0646012.65660HepG2HNRNPL
SALL4ENSG00000101115.8123.5381081.669000.597002.074101.54010HepG2HNRNPU
SALL4ENSG00000101115.8286.57370137.444601.060003.501002.39290HepG2IGF2BP3
SALL4ENSG00000101115.856.24110144.66950-1.363105.646004.44600HepG2LARP4
SALL4ENSG00000101115.866.60680155.36700-1.221904.289603.47630HepG2MAGOH
SALL4ENSG00000101115.873.33110156.21850-1.091104.442603.66070HepG2MATR3
SALL4ENSG00000101115.828.0361085.11240-1.602105.635404.51730HepG2MSI2
SALL4ENSG00000101115.8235.43240142.319300.726103.465402.66300HepG2PABPC4
SALL4ENSG00000101115.8196.33920143.665900.450501.837101.32520HepG2PCBP1
SALL4ENSG00000101115.8110.52740176.07550-0.671803.111102.29560HepG2PRPF4
SALL4ENSG00000101115.863.76180119.31960-0.904102.835701.60540HepG2PRPF6
SALL4ENSG00000101115.893.87000156.73430-0.739602.835102.23210HepG2PUF60
SALL4ENSG00000101115.8102.65580166.38360-0.696703.264302.63110HepG2PUM1
SALL4ENSG00000101115.8243.23280166.260100.548802.655801.99860HepG2PUM2
SALL4ENSG00000101115.828.40810109.52900-1.946906.491705.43680HepG2RAVER1
SALL4ENSG00000101115.8328.53430147.576901.1545010.643909.12790HepG2RBM15
SALL4ENSG00000101115.8166.2125063.605001.385703.470601.62550HepG2RBM39
SALL4ENSG00000101115.846.22340102.42430-1.147903.486002.29700HepG2RCC2
SALL4ENSG00000101115.862.55200162.69130-1.379007.582906.76620HepG2NELFE
SALL4ENSG00000101115.861.89530107.60080-0.797802.191401.34890HepG2RPS10
SALL4ENSG00000101115.841.1456078.76910-0.936902.612102.01390HepG2RPS19
SALL4ENSG00000101115.868.04980116.32470-0.773502.331401.59310HepG2RPS2
SALL4ENSG00000101115.861.11000142.70100-1.223505.419704.45710HepG2SF3A3
SALL4ENSG00000101115.854.80280158.86150-1.535408.738408.00450HepG2SRSF1
SALL4ENSG00000101115.869.17840154.75620-1.161606.063205.18810HepG2SRSF5
SALL4ENSG00000101115.8159.3261077.446001.040605.368304.45170HepG2SRSF7
SALL4ENSG00000101115.827.57490217.60280-2.9803032.0983030.78690HepG2SSB
SALL4ENSG00000101115.8329.97990174.529400.918805.978904.18900HepG2SSRP1
SALL4ENSG00000101115.8119.4090071.011200.749702.290001.42880HepG2SUPT6H
SALL4ENSG00000101115.825.2662064.74950-1.357703.272002.54410HepG2SUPV3L1
SALL4ENSG00000101115.897.28040142.79740-0.553701.844501.36940HepG2TAF15
SALL4ENSG00000101115.8127.7579052.786901.275105.318504.35930HepG2TARDBP
SALL4ENSG00000101115.855.87830171.42330-1.617205.462404.00740HepG2TBRG4
SALL4ENSG00000101115.8201.33430131.204500.617702.982002.11730HepG2TIA1
SALL4ENSG00000101115.842.4191079.32920-0.903102.448701.97320HepG2TIAL1
SALL4ENSG00000101115.879.06840153.12800-0.953604.048202.96690HepG2TUFM
SALL4ENSG00000101115.8280.1611089.963501.6387013.2180011.80820HepG2U2AF1
SALL4ENSG00000101115.8220.7234072.783701.600504.524503.24760HepG2U2AF2
SALL4ENSG00000101115.8189.08900130.080800.539602.292401.32540HepG2UTP18
SALL4ENSG00000101115.877.65240122.18300-0.653902.185801.63990HepG2UTP3
SALL4ENSG00000101115.840.13900173.77180-2.1141017.3701015.93990HepG2ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SALL4 is not available on ENCORE database.





1 RBPs can affect the splicing of SALL4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSSALL4ENSG00000101115.8chr20-5040656050408891504078715040889150405399504056800.592000.000640.05664longerHepG2RBM22

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SALL4 is not avaliable on ENCORE database.