RTN4R

General Information

Gene Name       : RTN4R
Gene ID             : ENSG00000040608.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RTN4R)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RTN4RENSG00000040608.130.000.020.01ENCSR000AEF
HepG2RTN4RENSG00000040608.130.470.000.23ENCSR985KAT
K562RTN4RENSG00000040608.130.330.010.17ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RTN4R is not avaliable on ENCORE database.



Proteins bound to RNA
  • RTN4R RNA is bound by 1 proteins.  







eCLIP assay for RTN4R is not avaliable on ENCORE database.





1 proteins are bound to RTN4R RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr222022914020229226-3'-UTR,intron-Distal5.5162811.17322K562PUM2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RTN4R is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RTN4R is not available on ENCORE database.

  • 52 RBPs can affect the levels of RTN4R.  








The Knockdown/knockout RNA-Seq assay for RTN4R is not available on ENCORE database.





52 RBPs can affect the gene expression of RTN4R :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RTN4RENSG00000040608.90.5354010.68740-4.319102.296001.74490HepG2BOP1
RTN4RENSG00000040608.960.105800.994405.917407.677206.69580HepG2DDX6
RTN4RENSG00000040608.910.745800.956003.490502.019801.50400HepG2EIF2S1
RTN4RENSG00000040608.91.3551013.83030-3.351402.723401.89540HepG2EWSR1
RTN4RENSG00000040608.912.415301.065903.541802.297201.66390HepG2FXR1
RTN4RENSG00000040608.913.154101.005203.709902.590101.93510HepG2IGF2BP2
RTN4RENSG00000040608.916.672100.534804.962304.065702.97610HepG2PABPC1
RTN4RENSG00000040608.913.953102.298602.601702.230801.72930HepG2PTBP1
RTN4RENSG00000040608.932.465003.766403.107505.157504.25510HepG2PUM2
RTN4RENSG00000040608.90.5086010.50990-4.369102.158901.53060HepG2SF3B1
RTN4RENSG00000040608.90.9362011.69370-3.642801.989301.33190HepG2SNRNP70
RTN4RENSG00000040608.990.3805025.593901.820107.581706.70780K562AGGF1
RTN4RENSG00000040608.956.3680028.130501.002602.397001.49190K562AKAP8
RTN4RENSG00000040608.9189.2613026.633302.8290016.7265014.87410K562AKAP8L
RTN4RENSG00000040608.969.9373027.947801.323204.251103.09320K562ATP5C1
RTN4RENSG00000040608.972.870208.376703.120807.536905.92660K562BCLAF1
RTN4RENSG00000040608.950.3741023.679001.089002.323701.37430K562CCAR1
RTN4RENSG00000040608.957.5120021.565501.415003.262001.67580K562CKAP4
RTN4RENSG00000040608.9113.6714045.065801.334704.619003.16320K562CPEB4
RTN4RENSG00000040608.966.679906.355003.3912011.217508.91340K562CSTF2
RTN4RENSG00000040608.971.9039033.761501.090602.952901.70170K562DDX21
RTN4RENSG00000040608.9150.8728065.071801.213106.565104.87780K562DDX3X
RTN4RENSG00000040608.921.837803.180802.779303.001902.05060K562EFTUD2
RTN4RENSG00000040608.955.0547018.148001.601003.218201.83850K562EXOSC5
RTN4RENSG00000040608.927.3905070.69790-1.368004.025303.31560K562FXR1
RTN4RENSG00000040608.987.2173049.736100.810202.349801.30630K562GLRX3
RTN4RENSG00000040608.973.7986020.937401.817404.024703.11630K562GRSF1
RTN4RENSG00000040608.970.7933021.115601.745203.788302.28410K562HNRNPA2B1
RTN4RENSG00000040608.9121.5116058.858201.045703.026502.09500K562HNRNPU
RTN4RENSG00000040608.955.821906.903203.015403.754102.48980K562IGF2BP2
RTN4RENSG00000040608.930.211407.012202.107003.743702.31260K562IGF2BP3
RTN4RENSG00000040608.966.5018028.258801.234603.088402.21270K562KIF1C
RTN4RENSG00000040608.946.560807.232102.686507.059305.69150K562MAGOH
RTN4RENSG00000040608.962.3051027.055301.203302.862501.76490K562MAK16
RTN4RENSG00000040608.928.343207.214001.974003.032902.06390K562MATR3
RTN4RENSG00000040608.996.1778031.657801.603007.012205.44080K562MBNL1
RTN4RENSG00000040608.927.273703.149603.114204.118202.46300K562NONO
RTN4RENSG00000040608.9113.3041058.098300.963503.634402.79220K562NSUN2
RTN4RENSG00000040608.975.5328018.465402.032205.101503.64250K562PABPN1
RTN4RENSG00000040608.987.2146021.948601.990305.562003.25520K562PPP1R8
RTN4RENSG00000040608.922.217807.028201.660402.073501.48310K562PTBP1
RTN4RENSG00000040608.972.5341026.401201.458003.962403.32940K562PUS1
RTN4RENSG00000040608.9141.5420025.733702.4594017.1569015.66060K562RBM15
RTN4RENSG00000040608.931.334206.726702.219703.959202.93770K562RBM22
RTN4RENSG00000040608.955.3770020.579901.428002.673201.40010K562SFPQ
RTN4RENSG00000040608.961.9057024.535101.335102.842701.77270K562SRSF4
RTN4RENSG00000040608.931.237306.515802.261203.978402.67820K562SRSF5
RTN4RENSG00000040608.939.505506.970102.502703.385002.59970K562TARDBP
RTN4RENSG00000040608.938.679406.724902.523905.234204.05780K562TIA1
RTN4RENSG00000040608.927.948306.612202.079402.310501.33190K562TRA2A
RTN4RENSG00000040608.9117.0462062.542800.904103.512302.07550K562TROVE2
RTN4RENSG00000040608.922.391003.167402.821402.683301.68280K562UCHL5
RTN4RENSG00000040608.933.6429061.60300-0.872701.958901.34680K562UPF1
RTN4RENSG00000040608.9108.9649026.779902.024508.250505.72720K562UTP18
RTN4RENSG00000040608.937.885803.231803.551106.570604.45530K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RTN4R is not available on ENCORE database.






No RBPs affect the alternative splcing events of RTN4R on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RTN4R is not avaliable on ENCORE database.