RNF170

General Information

Gene Name       : RNF170
Gene ID             : ENSG00000120925.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RNF170)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF170ENSG00000120925.157.174.645.90ENCSR000AEF
HepG2RNF170ENSG00000120925.1515.2415.2615.25ENCSR985KAT
K562RNF170ENSG00000120925.155.475.435.45ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF170 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF170 RNA is bound by 4 proteins.  







eCLIP assay for RNF170 is not avaliable on ENCORE database.





4 proteins are bound to RNF170 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr84275162642751733-5'-UTR,intron-Distal,intron-Proximal3.9940714.36983HepG2DDX3X
chr84275149442751582-5'-UTR,intron-Distal4.891514.75034HepG2XPO5
chr84275161942751724-5'-UTR,intron-Distal4.392043.84644HepG2NCBP2
chr84272511242725172-CDS,intron-Distal,intron-Proximal3.996514.45914HepG2PRPF8
chr84271650242716572-intron-Distal3.819315.37374HepG2XPO5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF170 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF170 is not available on ENCORE database.

  • 69 RBPs can affect the levels of RNF170.  








The Knockdown/knockout RNA-Seq assay for RNF170 is not available on ENCORE database.





69 RBPs can affect the gene expression of RNF170 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF170ENSG00000120925.9468.07960340.864000.457502.477801.62720HepG2BCLAF1
RNF170ENSG00000120925.9623.61540430.211800.535502.374501.65640HepG2CALR
RNF170ENSG00000120925.9353.84990491.99490-0.475504.271503.47930HepG2CKAP4
RNF170ENSG00000120925.9562.07020704.23980-0.325302.863402.11050HepG2DAZAP1
RNF170ENSG00000120925.9330.75720455.11820-0.460504.114003.11990HepG2DDX19B
RNF170ENSG00000120925.9622.07640432.274700.525004.011103.20850HepG2DDX21
RNF170ENSG00000120925.9582.38980360.876100.690404.676703.05880HepG2DDX27
RNF170ENSG00000120925.9464.82430714.02090-0.619304.230403.47970HepG2DDX6
RNF170ENSG00000120925.9688.91790470.799900.549105.952105.02940HepG2DKC1
RNF170ENSG00000120925.9860.58910665.560500.370702.515601.73730HepG2EIF4G2
RNF170ENSG00000120925.91144.83400804.935400.508107.617506.70330HepG2ETF1
RNF170ENSG00000120925.9458.90990321.007800.515503.064301.73100HepG2FKBP4
RNF170ENSG00000120925.9576.30460765.36750-0.409302.550001.88480HepG2FXR1
RNF170ENSG00000120925.9529.75400361.111400.552803.245502.55700HepG2GPKOW
RNF170ENSG00000120925.9564.36490437.848200.366101.996801.39690HepG2HNRNPC
RNF170ENSG00000120925.9384.52880718.83250-0.902609.642808.40490HepG2HNRNPK
RNF170ENSG00000120925.9520.61840641.50420-0.301202.355901.72760HepG2HNRNPL
RNF170ENSG00000120925.9825.82580344.616301.2607017.7898016.39560HepG2HNRNPLL
RNF170ENSG00000120925.9505.33530769.94200-0.607504.283503.51480HepG2MATR3
RNF170ENSG00000120925.9570.88390351.489200.699603.585602.47340HepG2MTPAP
RNF170ENSG00000120925.9543.83850698.32360-0.360702.741901.98120HepG2NOL12
RNF170ENSG00000120925.9199.35390348.49420-0.805803.057202.12190HepG2PABPC1
RNF170ENSG00000120925.9355.99920524.72030-0.559702.845301.78990HepG2PCBP2
RNF170ENSG00000120925.9429.75540343.395600.323502.000601.33550HepG2PRPF4
RNF170ENSG00000120925.9529.88840707.64590-0.417304.600603.87720HepG2PUM1
RNF170ENSG00000120925.9758.12730501.227400.596908.218007.25350HepG2PUS1
RNF170ENSG00000120925.9565.20160382.662300.562603.059002.21900HepG2RPS3A
RNF170ENSG00000120925.9343.81900577.78550-0.748905.050504.12120HepG2SF3A3
RNF170ENSG00000120925.9488.33490725.24900-0.570606.393005.55500HepG2SF3B4
RNF170ENSG00000120925.9372.15840515.98390-0.471402.337201.46590HepG2SMNDC1
RNF170ENSG00000120925.9686.20600379.530800.854305.566004.44600HepG2SNRNP70
RNF170ENSG00000120925.9514.00390757.00470-0.558506.418405.77120HepG2SRSF1
RNF170ENSG00000120925.9923.10920659.771500.484405.733405.04650HepG2SSB
RNF170ENSG00000120925.9213.77790332.76460-0.638402.582001.52370HepG2STIP1
RNF170ENSG00000120925.9535.60020748.53950-0.482905.414004.59670HepG2SUCLG1
RNF170ENSG00000120925.9616.29910383.924900.682705.081504.20940HepG2SUPV3L1
RNF170ENSG00000120925.9547.61460335.925000.704905.810404.81580HepG2TARDBP
RNF170ENSG00000120925.9593.28930422.653700.489203.948503.37350HepG2TIAL1
RNF170ENSG00000120925.9291.44720422.37780-0.535302.666402.04880HepG2U2AF1
RNF170ENSG00000120925.9252.76530506.28500-1.002202.803101.80580HepG2U2AF2
RNF170ENSG00000120925.9337.23320494.71070-0.552804.454803.72390HepG2UTP3
RNF170ENSG00000120925.9141.06080377.70090-1.4209017.2557015.96060K562AGGF1
RNF170ENSG00000120925.9159.02670393.00540-1.3053013.8897012.25430K562AKAP8L
RNF170ENSG00000120925.9204.48720386.38290-0.918006.744405.89330K562AQR
RNF170ENSG00000120925.9267.23350412.33950-0.625705.230403.92930K562ATP5C1
RNF170ENSG00000120925.9113.00750179.93570-0.671102.826002.03570K562CPSF6
RNF170ENSG00000120925.9436.52100282.376400.628302.753702.10420K562DDX47
RNF170ENSG00000120925.9275.20050422.96110-0.620003.140902.19940K562DKC1
RNF170ENSG00000120925.9116.09920183.46200-0.660102.650901.76010K562EFTUD2
RNF170ENSG00000120925.9603.48730396.740600.605005.902804.55030K562EIF4G2
RNF170ENSG00000120925.9313.29860217.257900.528002.268501.63630K562G3BP2
RNF170ENSG00000120925.9155.94980294.92570-0.919303.509902.08290K562HNRNPA2B1
RNF170ENSG00000120925.9454.96120259.430400.810306.421305.22210K562HSPD1
RNF170ENSG00000120925.9148.07410281.08300-0.924705.286703.68110K562IGF2BP2
RNF170ENSG00000120925.9268.38100417.11000-0.636104.649703.53220K562KIF1C
RNF170ENSG00000120925.9252.29850399.25010-0.662204.003002.63530K562MAK16
RNF170ENSG00000120925.9354.60050467.26400-0.398002.384301.54920K562MBNL1
RNF170ENSG00000120925.9300.47880198.834000.595603.769302.83710K562MTPAP
RNF170ENSG00000120925.9169.84280327.51530-0.947405.412604.03470K562NAA15
RNF170ENSG00000120925.974.11280258.03700-1.799809.225207.04900K562PABPN1
RNF170ENSG00000120925.9148.49880262.96460-0.824404.694303.41230K562PCBP2
RNF170ENSG00000120925.9296.58490156.107500.925805.600204.41110K562PCBP3
RNF170ENSG00000120925.9236.78980119.740200.983603.498902.59140K562POLR2G
RNF170ENSG00000120925.9582.48740451.120600.368602.410401.51270K562PUM2
RNF170ENSG00000120925.9149.29050389.82100-1.3847013.7482012.58250K562PUS1
RNF170ENSG00000120925.9130.95350379.76590-1.5361018.8396017.25700K562RBM15
RNF170ENSG00000120925.9162.99400275.36950-0.756504.763203.62600K562RBM22
RNF170ENSG00000120925.9127.19210206.13950-0.696603.480801.96930K562RBM25
RNF170ENSG00000120925.9137.64650317.46330-1.205604.854002.67130K562RBM39
RNF170ENSG00000120925.997.42330236.01620-1.276504.437302.80280K562SF1
RNF170ENSG00000120925.985.78110225.97570-1.3974011.525909.70680K562SF3B4
RNF170ENSG00000120925.9121.15500270.99600-1.161404.645502.92790K562SNRNP200
RNF170ENSG00000120925.9175.06430281.45180-0.685004.023003.17640K562SRSF1
RNF170ENSG00000120925.9361.40720251.063200.525502.772701.41310K562SSRP1
RNF170ENSG00000120925.9133.66260210.66730-0.656402.717601.63600K562U2AF1
RNF170ENSG00000120925.9138.66890217.54940-0.649703.292602.41830K562U2AF2
RNF170ENSG00000120925.9170.02490395.16960-1.216703.252801.81340K562UTP18
RNF170ENSG00000120925.9278.05310208.436100.415702.153801.40020K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF170 is not available on ENCORE database.





4 RBPs can affect the splicing of RNF170 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNF170ENSG00000120925.9chr8-427290734272914942725146427252554274287042743014-0.193000.000150.00549excludedHepG2HNRNPK
SERNF170ENSG00000120925.9chr8-427290734272914942725146427252554274287042743014-0.163000.000380.03643excludedHepG2DDX6
SERNF170ENSG00000120925.9chr8-4274444542744557427428704274301442751626427517410.074000.000170.02682includedHepG2PCBP2
MXERNF170ENSG00000120925.9chr8-4272055842720632427251464272525542716887427169984272907342729149-0.215000.002080.090662includedK562LARP4
MXERNF170ENSG00000120925.9chr8-42720558427206324272514642725255427168874271699842742870427430140.203000.000920.050941includedHepG2DDX6

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNF170 is not avaliable on ENCORE database.