LYRM5

General Information

Gene Name       : LYRM5
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LYRM5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LYRM5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LYRM5 RNA is bound by 1 proteins.  







eCLIP assay for LYRM5 is not avaliable on ENCORE database.





1 proteins are bound to LYRM5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr122534869725348827+intron-Distal4.474754.55788HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LYRM5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LYRM5 is not available on ENCORE database.

  • 50 RBPs can affect the levels of LYRM5.  








The Knockdown/knockout RNA-Seq assay for LYRM5 is not available on ENCORE database.





50 RBPs can affect the gene expression of LYRM5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LYRM5ENSG00000205707.6323.87460148.735201.122607.105606.29650HepG2AKAP1
LYRM5ENSG00000205707.6220.16420119.557400.880805.181204.16620HepG2CALR
LYRM5ENSG00000205707.698.8183056.795900.798902.178501.56870HepG2DDX21
LYRM5ENSG00000205707.696.9543055.492300.804902.179401.37950HepG2DDX24
LYRM5ENSG00000205707.6149.3411078.911800.920203.253101.86360HepG2DDX27
LYRM5ENSG00000205707.6239.17110142.483100.747202.699802.08050HepG2DDX3X
LYRM5ENSG00000205707.674.28680122.38180-0.720202.059301.51960HepG2DDX6
LYRM5ENSG00000205707.6113.8730053.120601.100004.292603.48470HepG2DKC1
LYRM5ENSG00000205707.646.94880117.66260-1.325504.948404.16760HepG2EIF2S1
LYRM5ENSG00000205707.671.41170131.18220-0.877303.006102.28380HepG2FXR1
LYRM5ENSG00000205707.6140.1290072.297900.954602.310001.71510HepG2HNRNPA1
LYRM5ENSG00000205707.6289.85930176.594600.714803.856803.12440HepG2HNRNPLL
LYRM5ENSG00000205707.6108.4629065.079200.736802.120001.40850HepG2PRPF8
LYRM5ENSG00000205707.6100.3729056.553600.827602.805402.18670HepG2PUS1
LYRM5ENSG00000205707.6198.4513086.337101.200604.957604.02870HepG2RAVER1
LYRM5ENSG00000205707.6229.11360105.767901.115107.180506.15560HepG2RPLP0
LYRM5ENSG00000205707.6148.8164084.780700.811602.774001.82880HepG2RPS10
LYRM5ENSG00000205707.6109.2523062.065500.815702.561301.96800HepG2RPS19
LYRM5ENSG00000205707.6104.7659062.312500.749502.185901.34550HepG2SERBP1
LYRM5ENSG00000205707.662.05200105.84420-0.770402.511501.87000HepG2SF3A3
LYRM5ENSG00000205707.6139.0569096.471400.527401.914301.32450HepG2SRSF7
LYRM5ENSG00000205707.6198.14480105.690100.906605.106404.45110HepG2SSB
LYRM5ENSG00000205707.6121.2074077.627100.642702.057901.61340HepG2TIAL1
LYRM5ENSG00000205707.6154.8454082.076100.915704.518003.69320HepG2ZC3H8
LYRM5ENSG00000205707.6249.94750373.22040-0.578402.296601.77160K562AGGF1
LYRM5ENSG00000205707.6259.90070388.33410-0.579302.243401.65230K562AKAP8L
LYRM5ENSG00000205707.6289.54060448.50710-0.631403.636202.98160K562AQR
LYRM5ENSG00000205707.6294.02640639.79310-1.121708.029306.17310K562CNOT7
LYRM5ENSG00000205707.6244.84960509.17270-1.0563012.4389010.76630K562CPSF6
LYRM5ENSG00000205707.6100.66600154.43370-0.617402.553401.46030K562EIF4B
LYRM5ENSG00000205707.6278.13060439.07390-0.658703.750202.67110K562FTO
LYRM5ENSG00000205707.6254.09060178.338800.510602.553301.96700K562FXR1
LYRM5ENSG00000205707.6307.08230211.903200.535102.320801.68110K562G3BP2
LYRM5ENSG00000205707.6366.50700486.14690-0.407602.329301.60000K562GPKOW
LYRM5ENSG00000205707.6280.87690503.00290-0.840602.905001.65130K562HNRNPA2B1
LYRM5ENSG00000205707.6199.22020315.00990-0.661001.997601.47920K562HNRNPC
LYRM5ENSG00000205707.6735.12100564.320400.381402.714701.59770K562MSI2
LYRM5ENSG00000205707.696.03320440.25410-2.196709.423807.21640K562PABPN1
LYRM5ENSG00000205707.6554.80780310.130200.839003.461002.52910K562PCBP3
LYRM5ENSG00000205707.6403.63810237.876200.762803.973503.00770K562POLR2G
LYRM5ENSG00000205707.6290.19690523.67740-0.851602.756301.32950K562PPP1R8
LYRM5ENSG00000205707.6237.46700385.25420-0.698103.091602.52320K562PUS1
LYRM5ENSG00000205707.6240.13370375.26170-0.644102.042001.51850K562RBM15
LYRM5ENSG00000205707.6320.99790219.143100.550602.894101.41250K562SDAD1
LYRM5ENSG00000205707.6171.44600402.77850-1.232203.772402.30170K562SF1
LYRM5ENSG00000205707.6194.69370358.41540-0.880408.199306.85340K562SF3A3
LYRM5ENSG00000205707.6155.97790220.48990-0.499402.293301.51760K562SF3B4
LYRM5ENSG00000205707.6241.15630491.25790-1.026503.417401.91230K562SFPQ
LYRM5ENSG00000205707.6266.26480462.32550-0.796002.479401.34360K562SNRNP200
LYRM5ENSG00000205707.6321.04660238.601900.428102.224201.48670K562SYNCRIP
LYRM5ENSG00000205707.6155.13140230.47490-0.571102.699001.89180K562TIA1
LYRM5ENSG00000205707.6153.64670226.08460-0.557202.477501.45680K562TRA2A
LYRM5ENSG00000205707.6217.11170390.47280-0.846803.011601.64330K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LYRM5 is not available on ENCORE database.





2 RBPs can affect the splicing of LYRM5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELYRM5ENSG00000205707.6chr12+2535665825356766253482052534827125356853253569410.065000.000010.04171includedK562WRN
SELYRM5ENSG00000205707.6chr12+2535665825356766253482052534827125356853253569410.100000.001420.06620includedK562EFTUD2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LYRM5 is not avaliable on ENCORE database.