LMF1

General Information

Gene Name       : LMF1
Gene ID             : ENSG00000103227.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LMF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LMF1ENSG00000103227.181.970.781.38ENCSR000AEF
HepG2LMF1ENSG00000103227.182.741.552.15ENCSR985KAT
K562LMF1ENSG00000103227.180.810.060.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LMF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LMF1 RNA is bound by 14 proteins.  







eCLIP assay for LMF1 is not avaliable on ENCORE database.





14 proteins are bound to LMF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr16919906920065-3'-UTR,CDS,intron-Distal4.113153.77218HepG2SND1
chr16971405971521-intron-Distal4.164734.03915HepG2SUGP2
chr16961242961311-intron-Distal4.084047.48189HepG2CSTF2T
chr16999004999041-intron-Distal6.172495.99111K562WRN
chr16983929983979-intron-Distal,intron-Proximal3.958563.16310HepG2CSTF2T
chr16963100963184-intron-Distal5.9688114.15035HepG2CSTF2T
chr16909003909062-intron-Distal4.029483.04956HepG2HNRNPL
chr16978630978706-intron-Distal3.392123.00054HepG2PRPF4
chr16968011968047-intron-Distal3.638515.86001HepG2CSTF2T
chr16964422964474-intron-Distal6.2564320.22556HepG2CSTF2T
chr16937521937586-intron-Distal4.438244.92128HepG2CSTF2T
chr16944254944349-intron-Distal5.219896.62861HepG2FAM120A
chr16982324982433-intron-Distal4.0832210.06144HepG2CSTF2T
chr16936432936549-intron-Distal5.3590211.61783HepG2CSTF2T
chr16965357965397-intron-Distal4.4219811.12397HepG2CSTF2T
chr16964445964562-intron-Distal4.542774.61288HepG2PRPF4
chr16932520932669-intron-Distal3.264553.75706HepG2LSM11
chr16964716964770-intron-Distal5.196747.28794HepG2FAM120A
chr16909110909155-intron-Distal4.913175.17468K562AGGF1
chr16976428976468-intron-Distal3.241733.02891HepG2HNRNPL
chr16960468960514-intron-Distal4.079313.44758HepG2CSTF2T
chr16964626964655-intron-Distal5.6335728.85876HepG2CSTF2T
chr16976281976325-intron-Distal3.135234.63615HepG2HNRNPL
chr16975084975199-intron-Distal3.265553.84025HepG2SUGP2
chr16982213982245-intron-Distal4.273144.36133HepG2CSTF2T
chr16964731964821-intron-Distal5.2565431.24465HepG2CSTF2T
chr16964460964566-intron-Distal4.308134.94603K562CSTF2T
chr16979120979181-intron-Distal5.179189.99173HepG2CSTF2T
chr16982954982986-intron-Distal4.151513.87340HepG2CSTF2T
chr16909417909469-intron-Distal3.487833.12080HepG2XPO5
chr16979888979960-intron-Distal3.105937.11670HepG2CSTF2T
chr16981984982048-intron-Distal3.134125.66356HepG2CSTF2T
chr16964067964177-intron-Distal5.3772020.15389HepG2CSTF2T
chr16978613978684-intron-Distal5.2915610.73431HepG2CSTF2T
chr16978988979069-intron-Distal5.8386114.15035HepG2CSTF2T
chr16969044969098-intron-Distal5.048858.08715HepG2CSTF2T
chr16972569972642-intron-Distal3.632125.36846HepG2AGGF1
chr16963865963903-intron-Distal3.341646.58651HepG2CSTF2T
chr16964426964570-intron-Distal5.7688720.33663HepG2FAM120A
chr16968952969016-intron-Distal4.1237211.98634HepG2CSTF2T
chr16964655964703-intron-Distal6.4096525.29553HepG2CSTF2T
chr16972423972509-intron-Distal4.737875.24346HepG2AGGF1
chr1610129901013081-intron-Distal3.400474.74917HepG2PCBP2
chr16966691966710-intron-Distal3.777286.10842HepG2CSTF2T
chr16968781968825-intron-Distal3.473726.96229HepG2CSTF2T
chr16969400969435-intron-Distal3.071434.68402HepG2CSTF2T
chr16976241976281-intron-Distal4.542035.64178HepG2HNRNPL
chr16976468976529-intron-Distal3.595934.77135HepG2HNRNPL
chr16965065965082-intron-Distal4.777286.84460HepG2CSTF2T
chr16971568971598-intron-Distal3.721046.10842HepG2CSTF2T
chr16964593964626-intron-Distal5.0900818.85576HepG2CSTF2T
chr16969610969669-intron-Distal3.680898.83513HepG2CSTF2T
chr16972592972635-intron-Distal3.049764.30735HepG2HNRNPL
chr16967284967310-intron-Distal4.297604.36133HepG2CSTF2T
chr1610027191002767-intron-Distal3.136633.69530HepG2CSTF2T
chr16967688967727-intron-Distal5.053087.09999HepG2CSTF2T
chr16967009967057-intron-Distal3.285477.23670HepG2CSTF2T
chr16942784942842-intron-Distal3.382564.45183HepG2CSTF2T
chr16909110909263-intron-Distal4.854518.70712HepG2XPO5
chr16976342976408-intron-Distal4.633186.37635HepG2HNRNPL
chr16969991970073-intron-Distal4.581355.44892HepG2FAM120A
chr16983712983791-intron-Distal3.841335.80161HepG2CSTF2T
chr16966912966948-intron-Distal4.837077.84504HepG2CSTF2T
chr1610033331003394-intron-Distal4.410503.49072HepG2FAM120A
chr16968870968952-intron-Distal3.238157.00108HepG2CSTF2T
chr16979076979120-intron-Distal3.890536.73995HepG2CSTF2T
chr16969829969889-intron-Distal4.362248.19675HepG2CSTF2T
chr16963554963600-intron-Distal4.5056811.63297HepG2CSTF2T
chr16944925945017-intron-Distal3.700135.80161HepG2CSTF2T
chr16964593964705-intron-Distal4.597475.85370K562CSTF2T
chr16976086976129-intron-Distal3.449254.51074HepG2HNRNPL
chr16936429936559-intron-Distal4.5941210.57937HepG2FAM120A
chr16943902943968-intron-Distal4.104623.40229HepG2CSTF2T
chr1610025831002657-intron-Distal4.297604.36133HepG2CSTF2T
chr16968668968698-intron-Distal4.697836.32277HepG2CSTF2T
chr16969999970129-intron-Distal5.4096524.12114HepG2CSTF2T
chr16976164976227-intron-Distal4.606674.89163HepG2HNRNPL
chr16936260936380-intron-Distal4.3193110.30165HepG2CSTF2T
chr16969778969802-intron-Distal3.472844.37279HepG2CSTF2T
chr16964597964703-intron-Distal6.1000831.61706HepG2FAM120A
chr16964510964568-intron-Distal5.5790124.57955HepG2CSTF2T
chr16969956970098-intron-Distal3.534984.16791HepG2NKRF
chr16967128967199-intron-Distal3.931348.38969HepG2CSTF2T
chr16909099909169-intron-Distal4.415384.26705HepG2AGGF1
chr16972635972650-intron-Distal3.156773.89889HepG2HNRNPL
chr16966670966691-intron-Distal3.489937.20706HepG2CSTF2T
chr16944042944153-intron-Distal5.245259.90837HepG2FAM120A
chr16978647978694-intron-Distal3.975156.12422HepG2FAM120A
chr16979264979308-intron-Distal3.869536.61028HepG2CSTF2T
chr16978090978226-intron-Distal3.513728.69971HepG2CSTF2T
chr16978528978581-intron-Distal3.739438.15854HepG2CSTF2T
chr16964591964718-intron-Distal4.661693.30336K562EWSR1
chr16979416979456-intron-Distal4.892736.19429HepG2CSTF2T
chr16969144969189-intron-Distal3.945625.80161HepG2CSTF2T
chr1610041651004225-intron-Distal,intron-Proximal4.125273.87340HepG2CSTF2T
chr16937123937167-intron-Distal,intron-Proximal4.073874.19345HepG2CSTF2T
chr16982098982185-intron-Distal4.8090315.31748HepG2CSTF2T
chr16909142909193-intron-Distal3.659425.55877HepG2HNRNPL
chr16969492969562-intron-Distal4.0677710.99059HepG2CSTF2T
chr16983568983631-intron-Distal3.458563.92299HepG2CSTF2T
chr16972445972514-intron-Distal4.964926.28496K562AGGF1
chr16960262960345-intron-Distal4.613736.08348HepG2CSTF2T
chr16967760967814-intron-Distal4.486859.67020HepG2CSTF2T
chr16959351959413-intron-Distal4.577695.37406HepG2HNRNPM
chr16976805976865-intron-Distal3.223574.88713HepG2CSTF2T
chr16962609962677-intron-Distal4.0958412.90351HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LMF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LMF1 is not available on ENCORE database.

  • 57 RBPs can affect the levels of LMF1.  








The Knockdown/knockout RNA-Seq assay for LMF1 is not available on ENCORE database.





57 RBPs can affect the gene expression of LMF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LMF1ENSG00000103227.14333.98980178.195300.906205.042704.35120HepG2AKAP1
LMF1ENSG00000103227.14108.1607051.334401.075102.761601.86340HepG2BCLAF1
LMF1ENSG00000103227.1487.32170136.60580-0.645602.508701.86900HepG2CKAP4
LMF1ENSG00000103227.14152.8196082.945400.881502.984502.21860HepG2DAZAP1
LMF1ENSG00000103227.14424.10080170.656001.313209.634308.52820HepG2DDX3X
LMF1ENSG00000103227.14301.98010146.695101.041506.482505.56770HepG2DDX6
LMF1ENSG00000103227.1497.9717041.468701.240205.298404.44060HepG2DNAJC2
LMF1ENSG00000103227.14121.1253063.186600.938702.720601.80640HepG2EEF2
LMF1ENSG00000103227.14254.58620140.924200.853104.478703.73480HepG2EIF2S1
LMF1ENSG00000103227.14449.27870155.690801.528806.112405.16530HepG2EIF4A3
LMF1ENSG00000103227.14226.52480133.516200.762604.136503.11500HepG2EWSR1
LMF1ENSG00000103227.1484.7891042.219001.005902.722702.08120HepG2HNRNPA1
LMF1ENSG00000103227.14193.7733046.967402.0445014.0358012.58980HepG2HNRNPC
LMF1ENSG00000103227.1474.84130147.78730-0.981602.523501.85480HepG2HNRNPK
LMF1ENSG00000103227.14130.0868071.284800.867702.820902.08920HepG2IGF2BP1
LMF1ENSG00000103227.14103.5994047.656901.120204.261703.37060HepG2ILF2
LMF1ENSG00000103227.14160.6830099.859800.686102.254101.51220HepG2LARP4
LMF1ENSG00000103227.14287.75440157.283400.871403.446902.71410HepG2MAGOH
LMF1ENSG00000103227.14231.97820161.846800.519301.865001.33810HepG2NCBP2
LMF1ENSG00000103227.1478.61700131.88090-0.746302.131601.36770HepG2PABPC1
LMF1ENSG00000103227.14222.95340144.551800.625103.301802.65090HepG2PCBP1
LMF1ENSG00000103227.14100.2382041.612701.268205.269504.28190HepG2PPIL4
LMF1ENSG00000103227.1420.7412044.78700-1.110602.002601.31130HepG2PRPF8
LMF1ENSG00000103227.14125.6666078.514800.678502.209801.66940HepG2PUF60
LMF1ENSG00000103227.14133.7192083.348300.681902.458201.89210HepG2PUM1
LMF1ENSG00000103227.14226.51920144.574100.647703.094302.38540HepG2RBM25
LMF1ENSG00000103227.14108.2124041.132101.395405.180503.91080HepG2RPS10
LMF1ENSG00000103227.14103.8870049.911001.057503.478702.79790HepG2RPS19
LMF1ENSG00000103227.14122.2228073.535900.732902.524301.75770HepG2RPS2
LMF1ENSG00000103227.1490.7450041.545701.127004.011603.26010HepG2SAFB2
LMF1ENSG00000103227.1486.8739032.060701.438002.658901.34340HepG2SF1
LMF1ENSG00000103227.1457.31800142.37240-1.312605.738404.74530HepG2SF3A3
LMF1ENSG00000103227.14118.6871075.286300.656602.265601.62000HepG2SLBP
LMF1ENSG00000103227.1486.3200048.442800.833302.044801.47930HepG2SMN1
LMF1ENSG00000103227.14112.0242042.713201.391005.806604.38590HepG2SMNDC1
LMF1ENSG00000103227.1488.6195040.766301.120103.421101.63340HepG2SND1
LMF1ENSG00000103227.14102.90880159.84140-0.635302.380101.93260HepG2SRSF1
LMF1ENSG00000103227.14160.8198077.523601.052605.862005.00000HepG2SRSF5
LMF1ENSG00000103227.14106.6814071.114300.585001.969101.37110HepG2SRSF7
LMF1ENSG00000103227.14183.2285088.164301.055306.447405.56760HepG2SUCLG1
LMF1ENSG00000103227.14122.7266073.372800.742002.474401.58190HepG2SUPT6H
LMF1ENSG00000103227.1489.98080143.66800-0.675102.462701.92980HepG2TAF15
LMF1ENSG00000103227.14139.5503045.310801.622809.196308.37750HepG2TIAL1
LMF1ENSG00000103227.14122.7422045.742301.423907.558106.70300HepG2TRIM56
LMF1ENSG00000103227.14150.9074076.707900.976104.327503.20450HepG2TUFM
LMF1ENSG00000103227.1448.2447092.96330-0.946302.289901.71360HepG2U2AF1
LMF1ENSG00000103227.1426.2091061.89780-1.239802.710802.14790K562AGGF1
LMF1ENSG00000103227.1427.8829064.41000-1.207902.825302.16480K562AKAP8L
LMF1ENSG00000103227.1419.593603.937602.314902.225301.44840K562BOP1
LMF1ENSG00000103227.1425.4472069.29370-1.445204.163703.05840K562DKC1
LMF1ENSG00000103227.1428.719606.423402.160502.638401.39170K562EEF2
LMF1ENSG00000103227.1417.364303.615102.263902.156501.35430K562FTO
LMF1ENSG00000103227.1435.228405.352502.718304.107803.39560K562HNRNPC
LMF1ENSG00000103227.1429.6350076.56620-1.369403.785402.69290K562MBNL1
LMF1ENSG00000103227.1414.5017053.66810-1.887803.655402.60830K562NAA15
LMF1ENSG00000103227.1449.6877016.052101.630002.288401.53220K562PCBP3
LMF1ENSG00000103227.1442.1670012.312301.775903.368602.47810K562POLR2G
LMF1ENSG00000103227.146.6664063.85870-3.259908.511307.60680K562PUS1
LMF1ENSG00000103227.1439.1615016.590801.239002.163601.39090K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LMF1 is not available on ENCORE database.





2 RBPs can affect the splicing of LMF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELMF1ENSG00000103227.14chr16-905106906055904499904706918943918968-0.151000.000210.02252excludedHepG2DDX3X
SELMF1ENSG00000103227.14chr16-983990984145961015961079984243984254-0.232000.002680.08243excludedHepG2HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LMF1 is not avaliable on ENCORE database.