KATNA1

General Information

Gene Name       : KATNA1
Gene ID             : ENSG00000186625.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KATNA1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KATNA1ENSG00000186625.1326.0819.9022.99ENCSR000AEF
HepG2KATNA1ENSG00000186625.1313.7020.2716.98ENCSR985KAT
K562KATNA1ENSG00000186625.1340.9436.9838.96ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KATNA1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • KATNA1 RNA is bound by 6 proteins.  







eCLIP assay for KATNA1 is not avaliable on ENCORE database.





6 proteins are bound to KATNA1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6149969637149969677-5'-UTR,intron-Distal3.302114.14618K562ZNF622
chr6149925880149925916-CDS,intron-Distal3.391103.17151K562UCHL5
chr6149918743149918800-CDS,intron-Distal,intron-Proximal4.247893.45799HepG2U2AF2
chr6149925741149925809-CDS,intron-Distal,intron-Proximal4.428164.21433K562PRPF8
chr6149922820149922890-CDS,intron-Distal,intron-Proximal4.018283.98636K562LIN28B
chr6149924214149924298-intron-Distal3.666843.02234K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KATNA1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KATNA1 is not available on ENCORE database.

  • 48 RBPs can affect the levels of KATNA1.  








The Knockdown/knockout RNA-Seq assay for KATNA1 is not available on ENCORE database.





48 RBPs can affect the gene expression of KATNA1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KATNA1ENSG00000186625.9723.28510452.980900.675004.791304.11620HepG2AKAP1
KATNA1ENSG00000186625.9287.42350384.77190-0.420802.116801.58800HepG2BOP1
KATNA1ENSG00000186625.9237.66120322.73510-0.441402.746102.08190HepG2CKAP4
KATNA1ENSG00000186625.9244.75600353.23440-0.529302.669901.99280HepG2CPSF6
KATNA1ENSG00000186625.9358.50350477.77200-0.414302.773102.13030HepG2CELF1
KATNA1ENSG00000186625.9240.01860358.37090-0.578302.796502.19960HepG2EIF2S1
KATNA1ENSG00000186625.9265.14540385.55580-0.540202.234801.61270HepG2EIF4B
KATNA1ENSG00000186625.9256.70520370.66420-0.530002.646601.99500HepG2G3BP1
KATNA1ENSG00000186625.9223.31930400.39930-0.842305.638104.74620HepG2GPKOW
KATNA1ENSG00000186625.9365.12070472.09730-0.370702.238601.38850HepG2HNRNPA2B1
KATNA1ENSG00000186625.9364.04770467.88320-0.362002.427601.79210HepG2HNRNPL
KATNA1ENSG00000186625.9276.89740382.11020-0.464602.259701.68480HepG2HNRNPLL
KATNA1ENSG00000186625.9255.26850376.80030-0.561802.720102.04970HepG2IGF2BP2
KATNA1ENSG00000186625.9238.29120306.52450-0.363302.044501.40290HepG2ILF2
KATNA1ENSG00000186625.9239.01990366.44880-0.616503.269302.48680HepG2PABPC4
KATNA1ENSG00000186625.9293.75620486.23260-0.727005.783304.96330HepG2PUF60
KATNA1ENSG00000186625.9407.82830516.17830-0.339902.373201.81540HepG2PUM1
KATNA1ENSG00000186625.9621.73900491.619800.338702.189701.41560HepG2RBM15
KATNA1ENSG00000186625.9248.27500371.23260-0.580402.753901.95620HepG2RPS3A
KATNA1ENSG00000186625.9294.85760404.48800-0.456102.929502.32440HepG2SF3B4
KATNA1ENSG00000186625.9305.72440466.26420-0.608905.623204.68230HepG2SLBP
KATNA1ENSG00000186625.9702.24870537.957600.384403.588003.04000HepG2SRFBP1
KATNA1ENSG00000186625.9518.05210422.205200.295101.788501.38440HepG2SRSF1
KATNA1ENSG00000186625.9613.67310406.979000.592403.387002.26950HepG2SRSF3
KATNA1ENSG00000186625.9360.35730480.10900-0.413902.808502.17810HepG2SRSF5
KATNA1ENSG00000186625.9274.74520360.07990-0.390202.095501.48030HepG2SRSF7
KATNA1ENSG00000186625.9189.68490274.77420-0.534602.176701.56670HepG2SUPV3L1
KATNA1ENSG00000186625.9196.09090372.49070-0.925707.076405.99060HepG2TARDBP
KATNA1ENSG00000186625.9187.04690291.54610-0.640303.839103.27070HepG2TIAL1
KATNA1ENSG00000186625.9182.35200294.19750-0.690105.271104.54380HepG2TRIM56
KATNA1ENSG00000186625.9388.51640269.532700.527402.914702.22790HepG2ZC3H8
KATNA1ENSG00000186625.91261.470801573.14270-0.318503.787502.48510K562CPEB4
KATNA1ENSG00000186625.92986.233002460.027800.279602.813001.83080K562CELF1
KATNA1ENSG00000186625.92394.255701627.623600.5567012.7553011.46360K562DDX47
KATNA1ENSG00000186625.91976.653401636.937900.272003.080602.14920K562DKC1
KATNA1ENSG00000186625.9856.324301083.88170-0.340003.338902.56060K562EIF2S2
KATNA1ENSG00000186625.91039.36740846.922800.295302.460601.70890K562EIF3G
KATNA1ENSG00000186625.91687.248102000.58290-0.245702.483101.58960K562EIF4G2
KATNA1ENSG00000186625.91310.93190975.801600.425802.521301.85190K562G3BP2
KATNA1ENSG00000186625.9828.670701046.10850-0.336202.424201.67920K562GPKOW
KATNA1ENSG00000186625.9709.080201036.14910-0.547205.598604.77900K562HNRNPC
KATNA1ENSG00000186625.91245.58690973.127200.356002.149501.33460K562HNRNPM
KATNA1ENSG00000186625.91095.057301326.68160-0.276802.525701.67110K562HNRNPU
KATNA1ENSG00000186625.91035.322601205.51220-0.219602.036301.33760K562MTPAP
KATNA1ENSG00000186625.91722.790101267.652200.442502.876301.97420K562NAA15
KATNA1ENSG00000186625.91852.817202274.81370-0.296003.613702.51710K562PUM2
KATNA1ENSG00000186625.91863.830001508.626100.304902.125201.63670K562PUS1
KATNA1ENSG00000186625.92124.564101469.943300.531309.119508.06730K562RBM15
KATNA1ENSG00000186625.91330.55880820.150300.698005.669203.77570K562RRP9
KATNA1ENSG00000186625.91105.475801321.69170-0.257702.323101.56990K562SF3A3
KATNA1ENSG00000186625.9605.86800803.35920-0.407002.810001.77670K562SRFBP1
KATNA1ENSG00000186625.9732.01670949.11500-0.374702.531901.63360K562TRIM56
KATNA1ENSG00000186625.91618.476701263.710200.356905.593604.43320K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KATNA1 is not available on ENCORE database.





16 RBPs can affect the splicing of KATNA1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEKATNA1ENSG00000186625.9chr6-149922729149922888149919359149919486149924403149924509-0.162000.000000.00000excludedK562SF3B4
SEKATNA1ENSG00000186625.9chr6-149918198149918325149916008149916370149918642149918777-0.167000.000000.00000excludedK562SF3B4
SEKATNA1ENSG00000186625.9chr6-149922729149922888149919188149919486149924403149924509-0.153000.000010.00057excludedK562PRPF8
SEKATNA1ENSG00000186625.9chr6-149918198149918325149916008149916370149918642149918777-0.201000.000110.00316excludedHepG2U2AF1
SEKATNA1ENSG00000186625.9chr6-149922729149922888149919188149919486149924403149924509-0.136000.000160.02001excludedK562XRCC6
SEKATNA1ENSG00000186625.9chr6-149922729149922888149919188149919486149924403149924509-0.149000.002660.05869excludedHepG2HNRNPK
SEKATNA1ENSG00000186625.9chr6-149918198149918325149916008149916370149918642149918777-0.113000.000730.01075excludedHepG2U2AF2
SEKATNA1ENSG00000186625.9chr6-149925687149925918149924499149924509149944238149944454-0.052000.000590.00782excludedK562AQR
SEKATNA1ENSG00000186625.9chr6-149918198149918325149916012149916370149918642149918841-0.061000.000000.00007excludedK562AQR
SEKATNA1ENSG00000186625.9chr6-149922729149922888149919188149919486149924403149924509-0.115000.000040.00312excludedK562FXR1
SEKATNA1ENSG00000186625.9chr6-149918198149918325149916008149916370149918642149918777-0.064000.000050.00139excludedK562PUS1
SEKATNA1ENSG00000186625.9chr6-149922729149922888149919188149919486149924403149924509-0.195000.000160.01635excludedHepG2FTO
SEKATNA1ENSG00000186625.9chr6-149922729149922888149919359149919486149924403149924509-0.103000.000000.00003excludedK562U2AF1
SEKATNA1ENSG00000186625.9chr6-149918198149918325149916008149916370149918642149918777-0.095000.000260.00751excludedK562U2AF1
SEKATNA1ENSG00000186625.9chr6-149922729149922888149919359149919486149924403149924509-0.073000.000070.05767excludedK562TBRG4
SEKATNA1ENSG00000186625.9chr6-149922729149922888149919359149919486149924403149924509-0.061000.000590.01295excludedK562U2AF2
SEKATNA1ENSG00000186625.9chr6-149918198149918325149916008149916370149918642149918777-0.092000.000440.01004excludedK562U2AF2
SEKATNA1ENSG00000186625.9chr6-149922729149922888149919188149919486149924403149924509-0.100000.000130.00781excludedK562TARDBP
SEKATNA1ENSG00000186625.9chr6-1499227291499229351499193591499194861499244031499245090.054000.001500.03717includedK562RBM15
SEKATNA1ENSG00000186625.9chr6-1499227291499228881499191881499194861499244031499245090.075000.000010.00195includedK562ZC3H8
SEKATNA1ENSG00000186625.9chr6-149922729149922888149919188149919486149924403149924509-0.167000.000000.00000excludedK562HNRNPK
SEKATNA1ENSG00000186625.9chr6-149922729149922888149919188149919486149924403149924509-0.089000.000500.02344excludedK562PTBP1
SEKATNA1ENSG00000186625.9chr6-149922729149922888149919188149919486149924403149924509-0.192000.000000.00000excludedK562HNRNPC
A3SSKATNA1ENSG00000186625.9chr6-1499227291499229571499227291499228881499244031499246000.090000.000000.00000longerK562AQR
A3SSKATNA1ENSG00000186625.9chr6-1499186421499188411499186421499187771499193591499195450.081000.000000.00000longerK562AQR
MXEKATNA1ENSG00000186625.9chr6-1499227291499228881499244031499245091499194031499194861499442381499444190.089000.000340.015751includedK562PTBP1
MXEKATNA1ENSG00000186625.9chr6-1499227291499228881499244031499245091499194031499194861499442381499444190.084000.000000.000041includedK562U2AF1
MXEKATNA1ENSG00000186625.9chr6-1499227291499228881499244031499245091499194031499194861499442381499444190.099000.000040.004181includedK562FXR1
MXEKATNA1ENSG00000186625.9chr6-1499244031499245091499442381499444191499227291499228881499538941499540520.091000.008230.054051includedK562AQR
MXEKATNA1ENSG00000186625.9chr6-1499257961499259181499442381499444541499244031499245091499538941499540520.056000.000130.001531includedK562AQR
MXEKATNA1ENSG00000186625.9chr6-1499538941499540521499595211499596891499244031499245091499696041499698870.250000.007290.049031includedK562AQR
MXEKATNA1ENSG00000186625.9chr6-1499227291499228881499244031499245091499194031499194861499442381499444190.053000.000350.006931includedK562U2AF2
MXEKATNA1ENSG00000186625.9chr6-149924403149924509149944238149944419149919359149919486149953894149954052-0.054000.000960.015182includedK562U2AF2
MXEKATNA1ENSG00000186625.9chr6-1499227291499228881499244031499245091499194031499194861499442381499444190.096000.000090.003991includedK562TARDBP
MXEKATNA1ENSG00000186625.9chr6-1499227291499228881499244031499245091499194031499194861499442381499444190.110000.000700.065001includedK562XRCC6
MXEKATNA1ENSG00000186625.9chr6-149922729149922888149924403149924509149919403149919486149944238149944419-0.068000.000010.003282includedK562ZC3H8
MXEKATNA1ENSG00000186625.9chr6-1499227291499228881499244031499245091499194031499194861499442381499444190.061000.000060.017581includedK562TBRG4
MXEKATNA1ENSG00000186625.9chr6-1499227291499228881499244031499245091499194031499194861499442381499444190.161000.000000.000001includedK562HNRNPC
MXEKATNA1ENSG00000186625.9chr6-1499227291499228881499244031499245091499194031499194861499442381499444190.141000.001820.042421includedHepG2HNRNPK
MXEKATNA1ENSG00000186625.9chr6-1499227291499228881499244031499245091499194031499194861499442381499444190.135000.000000.000001includedK562SF3B4
MXEKATNA1ENSG00000186625.9chr6-1499227291499228881499244031499245091499194031499194861499442381499444190.167000.000000.000001includedK562HNRNPK
MXEKATNA1ENSG00000186625.9chr6-1499227291499228881499244031499245091499194031499194861499442381499444190.148000.000050.002061includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KATNA1 is not avaliable on ENCORE database.