HOXB8

General Information

Gene Name       : HOXB8
Gene ID             : ENSG00000120068.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HOXB8)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HOXB8ENSG00000120068.60.000.000.00ENCSR000AEF
HepG2HOXB8ENSG00000120068.60.000.000.00ENCSR985KAT
K562HOXB8ENSG00000120068.66.024.745.38ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HOXB8 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HOXB8 RNA is bound by 8 proteins.  







eCLIP assay for HOXB8 is not avaliable on ENCORE database.





8 proteins are bound to HOXB8 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174668996146690063-3'-UTR,intron-Distal5.475515.18845K562PCBP1
chr174668986146689917-3'-UTR,intron-Distal3.026833.20331K562CSTF2T
chr174668982446689928-3'-UTR,intron-Distal3.297593.90146K562KHSRP
chr174669016146690268-3'-UTR,intron-Distal4.639616.09301K562CSTF2T
chr174669228246692364-5'-UTR,intron-Distal,intron-Proximal5.168238.40257K562GTF2F1
chr174669228646692322-5'-UTR,intron-Distal,intron-Proximal4.928286.19339K562PTBP1
chr174669229946692369-5'-UTR,intron-Distal,intron-Proximal3.245004.09267K562FAM120A
chr174669229346692359-5'-UTR,intron-Distal,intron-Proximal4.0098714.63176K562TIA1
chr174669227246692362-5'-UTR,intron-Distal,intron-Proximal4.3754521.00892K562CSTF2T
chr174669217046692229-5'-UTR,intron-Distal4.2058922.74372K562PTBP1
chr174669193846692057-CDS,intron-Distal,intron-Proximal3.587349.95074K562CSTF2T
chr174669254546692589-intron-Distal,intron-Proximal4.286387.22321K562PTBP1
chr174669232246692361-intron-Distal,intron-Proximal4.428287.59321K562PTBP1
chr174669144246691504-intron-Distal4.568337.56720K562PTBP1
chr174669230146692360-intron-Distal,intron-Proximal3.896023.08243K562ILF3
chr174669116346691204-intron-Distal5.453598.42544K562PTBP1
chr174669131646691352-intron-Distal4.387055.63677K562PTBP1
chr174669254646692594-intron-Distal,intron-Proximal4.056433.21228K562TIA1
chr174669158046691626-intron-Distal3.903383.71735K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HOXB8 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HOXB8 is not available on ENCORE database.

  • 44 RBPs can affect the levels of HOXB8.  








The Knockdown/knockout RNA-Seq assay for HOXB8 is not available on ENCORE database.





44 RBPs can affect the gene expression of HOXB8 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HOXB8ENSG00000120068.5281.41710558.76290-0.9895011.026509.98840K562AGGF1
HOXB8ENSG00000120068.5258.40990581.39950-1.1699014.3113012.64240K562AKAP8L
HOXB8ENSG00000120068.5120.92250258.11010-1.093906.516605.67820K562AQR
HOXB8ENSG00000120068.5441.68310609.99270-0.465804.070502.94230K562ATP5C1
HOXB8ENSG00000120068.5254.87830393.77370-0.627602.423801.61290K562BOP1
HOXB8ENSG00000120068.5183.25700541.48580-1.5631013.6461011.33280K562CNOT7
HOXB8ENSG00000120068.5308.10750430.57840-0.482803.659202.38060K562CPEB4
HOXB8ENSG00000120068.5160.23710418.73090-1.385806.584905.37060K562CPSF6
HOXB8ENSG00000120068.5263.52160421.12130-0.676305.115503.77930K562CELF1
HOXB8ENSG00000120068.553.84970107.80880-1.001503.733401.62270K562DDX24
HOXB8ENSG00000120068.5325.68730445.61690-0.452303.416802.70340K562DDX47
HOXB8ENSG00000120068.5170.01010361.02410-1.086503.421302.39630K562FTO
HOXB8ENSG00000120068.562.25100109.97610-0.821002.915001.53510K562FUS
HOXB8ENSG00000120068.5202.89160310.02600-0.611704.008902.64330K562GLRX3
HOXB8ENSG00000120068.5203.28570298.74740-0.555402.807102.04670K562GRSF1
HOXB8ENSG00000120068.5102.03550184.69000-0.856004.414703.06330K562HNRNPA1
HOXB8ENSG00000120068.5292.36560550.47990-0.912904.122702.54410K562HNRNPA2B1
HOXB8ENSG00000120068.5114.14760180.23080-0.658902.637701.52660K562HNRNPF
HOXB8ENSG00000120068.593.04380402.69630-2.1137031.2425027.98340K562HNRNPL
HOXB8ENSG00000120068.5124.39890204.53700-0.717403.881802.81900K562HNRNPU
HOXB8ENSG00000120068.5102.57530170.29940-0.731403.041501.48430K562KHDRBS1
HOXB8ENSG00000120068.5373.21630617.07570-0.725402.867402.02520K562KIF1C
HOXB8ENSG00000120068.5500.33430691.27150-0.466403.772702.68400K562MBNL1
HOXB8ENSG00000120068.5176.87090390.25100-1.141703.327602.36620K562METAP2
HOXB8ENSG00000120068.5253.45480365.02020-0.526202.919801.75440K562MSI2
HOXB8ENSG00000120068.5213.41070325.95170-0.611004.259003.27410K562MTPAP
HOXB8ENSG00000120068.5187.95180113.900400.722503.537902.00070K562PCBP1
HOXB8ENSG00000120068.540.84650113.14750-1.469903.788703.02320K562PTBP1
HOXB8ENSG00000120068.5197.42000373.64290-0.920406.995005.69500K562PUF60
HOXB8ENSG00000120068.5291.87420389.39900-0.415902.427501.52610K562PUM2
HOXB8ENSG00000120068.5125.73510576.72260-2.1975026.9873025.28410K562PUS1
HOXB8ENSG00000120068.5263.77120561.81840-1.0908011.5507010.35180K562RBM15
HOXB8ENSG00000120068.5197.80540115.809900.772202.823501.81060K562RPS3
HOXB8ENSG00000120068.5219.31460357.36070-0.704405.792004.64540K562SF3A3
HOXB8ENSG00000120068.5186.16910366.12360-0.9757010.223708.55130K562SRPK2
HOXB8ENSG00000120068.5204.39590111.795300.870404.058602.74880K562SRSF4
HOXB8ENSG00000120068.5349.46750605.27160-0.792403.081801.54990K562SUPT6H
HOXB8ENSG00000120068.5223.38870108.278701.044706.752805.38750K562TIA1
HOXB8ENSG00000120068.5270.22420584.60120-1.113302.867701.54560K562UTP18
HOXB8ENSG00000120068.5225.97890343.54730-0.604303.062401.79240K562UTP3
HOXB8ENSG00000120068.5211.96680328.58410-0.632404.100203.02720K562WDR3
HOXB8ENSG00000120068.5215.24160341.68860-0.666705.597004.43630K562WDR43
HOXB8ENSG00000120068.5185.57930305.86120-0.720804.516202.85820K562WRN
HOXB8ENSG00000120068.5108.27190203.20280-0.908303.409801.60770K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HOXB8 is not available on ENCORE database.






No RBPs affect the alternative splcing events of HOXB8 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HOXB8 is not avaliable on ENCORE database.