GMPPB

General Information

Gene Name       : GMPPB
Gene ID             : ENSG00000173540.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: GMPPB)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GMPPBENSG00000173540.122.959.045.99ENCSR000AEF
HepG2GMPPBENSG00000173540.1216.656.7011.67ENCSR985KAT
K562GMPPBENSG00000173540.125.353.904.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GMPPB is not avaliable on ENCORE database.



Proteins bound to RNA
  • GMPPB RNA is bound by 7 proteins.  







eCLIP assay for GMPPB is not avaliable on ENCORE database.





7 proteins are bound to GMPPB RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr34975836349758428-3'-UTR,5'-UTR,intron-Distal4.630339.04751K562UPF1
chr34975770749757751-3'-UTR,5'-UTR,intron-Distal4.341665.99105K562UPF1
chr34975850749758612-3'-UTR,5'-UTR,intron-Distal4.128763.19668HepG2UPF1
chr34975870949758860-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.6439213.19328K562UPF1
chr34975619149756239-3'-UTR,CDS,intron-Distal4.797086.59918K562RBM15
chr34975810149758153-3'-UTR,5'-UTR,intron-Distal3.607423.66583K562AKAP1
chr34975856049758613-3'-UTR,5'-UTR,intron-Distal3.765665.15345K562UPF1
chr34976118249761349-5'-UTR,intron-Distal,intron-Proximal3.105654.63906HepG2NCBP2
chr34975929649759367-5'-UTR,CDS,intron-Distal,intron-Proximal4.450805.95597K562EFTUD2
chr34975975849759853-5'-UTR,CDS,intron-Distal,intron-Proximal3.299473.78727K562PRPF8
chr34975980549759875-5'-UTR,CDS,intron-Distal,intron-Proximal4.113629.08333HepG2PRPF8
chr34976062849760742-5'-UTR,CDS,intron-Distal,intron-Proximal3.980507.87148HepG2PRPF8
chr34976083749760908-5'-UTR,CDS,intron-Distal,intron-Proximal3.752894.41267HepG2PPIG
chr34975979749759843-intron-Distal,intron-Proximal4.808094.24111K562EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GMPPB is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GMPPB is not available on ENCORE database.

  • 53 RBPs can affect the levels of GMPPB.  








The Knockdown/knockout RNA-Seq assay for GMPPB is not available on ENCORE database.





53 RBPs can affect the gene expression of GMPPB :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GMPPBENSG00000173540.8323.08560188.724900.775504.038602.91420HepG2ABCF1
GMPPBENSG00000173540.867.39500132.23570-0.972403.908902.74700HepG2ADAR
GMPPBENSG00000173540.8287.28140178.927900.683002.977802.42800HepG2AKAP1
GMPPBENSG00000173540.883.91270265.04440-1.659303.534402.86670HepG2BOP1
GMPPBENSG00000173540.895.92120276.29630-1.526303.643002.52460HepG2DDX59
GMPPBENSG00000173540.877.53670128.43430-0.728102.530501.59180HepG2DHX30
GMPPBENSG00000173540.86.1081045.04340-2.882504.902901.48030HepG2DROSHA
GMPPBENSG00000173540.8224.23360141.527100.663802.783402.18830HepG2EIF2S1
GMPPBENSG00000173540.8251.38280143.163000.812104.671203.17350HepG2EIF2S2
GMPPBENSG00000173540.8222.42940381.51250-0.778403.011802.38880HepG2ETF1
GMPPBENSG00000173540.8277.23530157.840800.812504.407203.54850HepG2FXR1
GMPPBENSG00000173540.8158.27200244.04600-0.624703.549702.74530HepG2HNRNPF
GMPPBENSG00000173540.8215.03950148.301100.536001.977201.37970HepG2HNRNPK
GMPPBENSG00000173540.8100.81770263.15350-1.384202.477801.87740HepG2HNRNPLL
GMPPBENSG00000173540.8208.10740131.481800.662403.064602.06540HepG2HNRNPM
GMPPBENSG00000173540.8410.91930157.896101.379806.234505.25910HepG2MAGOH
GMPPBENSG00000173540.8130.44270268.51150-1.041602.293301.41630HepG2MTPAP
GMPPBENSG00000173540.8163.7760085.507400.937503.733902.07640HepG2NKRF
GMPPBENSG00000173540.868.55260144.43510-1.075104.380303.09200HepG2PCBP2
GMPPBENSG00000173540.8236.85910140.695100.751404.316503.66610HepG2PTBP1
GMPPBENSG00000173540.8197.97260274.11520-0.469501.830101.33180HepG2PUF60
GMPPBENSG00000173540.8287.38950156.577700.876006.189605.43500HepG2NELFE
GMPPBENSG00000173540.8213.14750145.835200.547402.445301.86150HepG2RECQL
GMPPBENSG00000173540.8147.94610262.89120-0.829404.823803.95500HepG2RPLP0
GMPPBENSG00000173540.8274.75630132.294001.054304.367103.59020HepG2SAFB2
GMPPBENSG00000173540.899.11080260.43580-1.393803.323402.55680HepG2SF3B1
GMPPBENSG00000173540.8255.34700142.261600.843803.529902.43350HepG2SMNDC1
GMPPBENSG00000173540.864.83080360.11770-2.4737013.3485012.46750HepG2SRFBP1
GMPPBENSG00000173540.8256.14110152.892000.744304.308803.75070HepG2SRSF1
GMPPBENSG00000173540.8118.00220280.32690-1.248302.785201.78050HepG2SRSF3
GMPPBENSG00000173540.8166.29400270.67840-0.702804.085003.35170HepG2SRSF5
GMPPBENSG00000173540.892.14710239.76570-1.3796012.1408010.86130HepG2SRSF7
GMPPBENSG00000173540.8186.25400126.274300.560602.347401.57520HepG2TIA1
GMPPBENSG00000173540.884.64540144.38370-0.770403.185102.65450HepG2TIAL1
GMPPBENSG00000173540.863.23390163.01650-1.366206.441005.49990HepG2U2AF1
GMPPBENSG00000173540.876.38540139.28150-0.866603.170501.77490HepG2ZRANB2
GMPPBENSG00000173540.8283.44220415.59530-0.552102.546401.99700K562AGGF1
GMPPBENSG00000173540.8718.67570382.066400.911408.206407.28410K562AQR
GMPPBENSG00000173540.8293.62840487.60550-0.731703.851502.11230K562DDX19B
GMPPBENSG00000173540.8351.25690199.733700.814302.961302.11380K562EIF4A3
GMPPBENSG00000173540.840.91540104.80020-1.356904.918803.91320K562G3BP2
GMPPBENSG00000173540.8340.74830237.813700.518803.041701.92860K562HNRNPL
GMPPBENSG00000173540.8299.60860458.98120-0.615402.532101.74620K562KIF1C
GMPPBENSG00000173540.8257.77130349.73830-0.440202.658001.86500K562MTPAP
GMPPBENSG00000173540.8179.30950388.57930-1.1158013.7155012.23330K562NSUN2
GMPPBENSG00000173540.8213.14690137.767200.629502.762601.34050K562PHF6
GMPPBENSG00000173540.8248.70760417.86830-0.748603.436502.78760K562RBM15
GMPPBENSG00000173540.8440.11550262.076000.747802.822401.50170K562SFPQ
GMPPBENSG00000173540.8256.32960392.84980-0.616005.099903.87530K562SRPK2
GMPPBENSG00000173540.8363.73590199.432000.866904.609502.97180K562TROVE2
GMPPBENSG00000173540.8517.57230412.019700.328902.341601.67770K562UPF1
GMPPBENSG00000173540.8171.10940352.55080-1.042908.708307.11480K562WDR3
GMPPBENSG00000173540.8193.31470366.62210-0.923309.774708.29180K562WDR43
GMPPBENSG00000173540.8548.81770430.422500.350502.035501.30860K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GMPPB is not available on ENCORE database.






No RBPs affect the alternative splcing events of GMPPB on ENCORE database.





The Knockdown/knockout RNA-Seq assay for GMPPB is not avaliable on ENCORE database.