COX17

General Information

Gene Name       : COX17
Gene ID             : ENSG00000138495.6
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: COX17)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COX17ENSG00000138495.633.9678.1456.05ENCSR000AEF
HepG2COX17ENSG00000138495.644.1035.7439.92ENCSR985KAT
K562COX17ENSG00000138495.629.4921.8725.68ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COX17 is not avaliable on ENCORE database.



Proteins bound to RNA
  • COX17 RNA is bound by 6 proteins.  







eCLIP assay for COX17 is not avaliable on ENCORE database.





6 proteins are bound to COX17 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3119393991119394025-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.661095.50697K562UCHL5
chr3119388439119388517-3'-UTR,intron-Distal4.521133.91772K562TARDBP
chr3119388495119388513-3'-UTR,intron-Distal4.161097.87612K562UCHL5
chr3119388415119388518-3'-UTR,intron-Distal3.305358.02162HepG2BCLAF1
chr3119388424119388514-3'-UTR,intron-Distal3.850735.75263HepG2LARP4
chr3119396056119396178-5'-UTR,CDS,intron-Distal,intron-Proximal4.9119922.64250K562DDX3X
chr3119396213119396250-5'-UTR,intron-Distal,intron-Proximal5.200904.11950K562DDX3X
chr3119396050119396181-5'-UTR,CDS,intron-Distal,intron-Proximal3.050535.51805K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COX17 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COX17 is not available on ENCORE database.

  • 48 RBPs can affect the levels of COX17.  








The Knockdown/knockout RNA-Seq assay for COX17 is not available on ENCORE database.





48 RBPs can affect the gene expression of COX17 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COX17ENSG00000138495.2669.61280489.433600.452102.378401.88070HepG2AKAP1
COX17ENSG00000138495.2169.34940421.40300-1.315204.900603.59000HepG2CCAR1
COX17ENSG00000138495.2588.85200434.084400.439804.047303.17880HepG2DAZAP1
COX17ENSG00000138495.2147.75390219.83790-0.573202.504801.85680HepG2DDX21
COX17ENSG00000138495.2334.16960434.52810-0.378902.460601.88810HepG2ETF1
COX17ENSG00000138495.2305.46750425.16440-0.477002.523601.67460HepG2G3BP2
COX17ENSG00000138495.297.16850177.62580-0.870303.676202.63070HepG2GEMIN5
COX17ENSG00000138495.266.74900210.66310-1.6581010.988309.83660HepG2HNRNPLL
COX17ENSG00000138495.2313.81210431.86500-0.460702.373401.76490HepG2MAGOH
COX17ENSG00000138495.2266.67830385.77060-0.532603.732403.04960HepG2PCBP1
COX17ENSG00000138495.2220.70680392.57170-0.830807.317906.51160HepG2PTBP1
COX17ENSG00000138495.2344.49100436.13810-0.340302.502701.93270HepG2PUM1
COX17ENSG00000138495.2349.64250200.202500.804303.446902.66170HepG2RAVER1
COX17ENSG00000138495.2575.68660363.183900.664506.352905.64550HepG2RBM22
COX17ENSG00000138495.2243.14310436.86500-0.845407.040006.24590HepG2NELFE
COX17ENSG00000138495.2251.97730406.93420-0.691504.793704.01200HepG2RECQL
COX17ENSG00000138495.2130.96690194.10540-0.567602.287001.72280HepG2RPS19
COX17ENSG00000138495.2306.82740238.533700.363101.899801.34950HepG2SAFB2
COX17ENSG00000138495.2146.16530224.37770-0.618302.258701.36570HepG2SRSF3
COX17ENSG00000138495.2237.85500347.06170-0.545103.786903.16320HepG2SRSF9
COX17ENSG00000138495.2458.83580255.077100.846905.305004.41670HepG2SUPV3L1
COX17ENSG00000138495.284.17550383.49230-2.1877026.9778025.46350HepG2TAF15
COX17ENSG00000138495.2122.53760205.37020-0.745002.851602.11780HepG2TARDBP
COX17ENSG00000138495.2164.49650319.30280-0.956902.370201.46610HepG2U2AF2
COX17ENSG00000138495.2271.89270424.82520-0.643803.225902.32330HepG2UBE2L3
COX17ENSG00000138495.2236.00150150.674400.647303.007802.21900HepG2UCHL5
COX17ENSG00000138495.266.80410227.56180-1.7683015.4215014.17790HepG2UTP3
COX17ENSG00000138495.2367.90810259.227400.505003.822103.20760HepG2ZNF622
COX17ENSG00000138495.2575.64280407.657500.497704.633403.93230K562AGGF1
COX17ENSG00000138495.2609.40600424.191100.522604.147803.34470K562AKAP8L
COX17ENSG00000138495.2552.35640445.088000.311402.128901.33530K562ATP5C1
COX17ENSG00000138495.2105.44900166.74610-0.661102.522001.52490K562CCAR1
COX17ENSG00000138495.2410.24280312.939200.390502.626501.34110K562DDX27
COX17ENSG00000138495.2293.61370399.52890-0.444402.436001.81900K562DDX47
COX17ENSG00000138495.272.89160169.60790-1.218404.419203.12010K562EIF3A
COX17ENSG00000138495.2164.75590236.98900-0.524502.552501.78710K562EIF3G
COX17ENSG00000138495.2296.95670172.984200.779505.006603.84170K562FIP1L1
COX17ENSG00000138495.2114.39480197.96400-0.791203.369302.57500K562G3BP2
COX17ENSG00000138495.2844.61840530.910400.669705.990604.87510K562GRSF1
COX17ENSG00000138495.2247.29980142.289900.797304.088502.94240K562HNRNPM
COX17ENSG00000138495.2293.88960383.63360-0.384502.230701.42880K562HNRNPU
COX17ENSG00000138495.2343.71250234.518800.551403.024302.19340K562HSPD1
COX17ENSG00000138495.2617.17240450.155200.455203.254902.35340K562KIF1C
COX17ENSG00000138495.2198.83520335.54280-0.754904.454603.40070K562PCBP3
COX17ENSG00000138495.2318.49580196.382600.697504.419203.34890K562PPIG
COX17ENSG00000138495.2380.25120224.947100.757304.626003.65740K562PRPF8
COX17ENSG00000138495.2859.59950420.645401.0310013.5977012.44010K562PUS1
COX17ENSG00000138495.2303.56910205.741600.561103.382202.43530K562SF3B4
COX17ENSG00000138495.2280.92810371.40110-0.402802.450201.56340K562SRPK2
COX17ENSG00000138495.274.71080194.31620-1.379006.512603.84060K562TAF15
COX17ENSG00000138495.2167.31270245.65390-0.554102.490401.60100K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COX17 is not available on ENCORE database.





2 RBPs can affect the splicing of COX17 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECOX17ENSG00000138495.2chr3-1193957081193958131193939911193940801193960501193961930.235000.000010.01407includedK562TAF15
A3SSCOX17ENSG00000138495.2chr3-1193939911193941051193939911193940801193957081193958130.521000.000000.00005longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for COX17 is not avaliable on ENCORE database.