CHN1

General Information

Gene Name       : CHN1
Gene ID             : ENSG00000128656.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHN1ENSG00000128656.130.380.280.33ENCSR000AEF
HepG2CHN1ENSG00000128656.133.626.054.83ENCSR985KAT
K562CHN1ENSG00000128656.130.390.980.69ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHN1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHN1 RNA is bound by 1 proteins.  







eCLIP assay for CHN1 is not avaliable on ENCORE database.





1 proteins are bound to CHN1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2175825895175825947-intron-Distal4.806385.68967HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHN1 is not available on ENCORE database.

  • 49 RBPs can affect the levels of CHN1.  








The Knockdown/knockout RNA-Seq assay for CHN1 is not available on ENCORE database.





49 RBPs can affect the gene expression of CHN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHN1ENSG00000128656.9120.3742038.133301.658306.182905.42360HepG2AKAP1
CHN1ENSG00000128656.941.9144095.05300-1.181303.778903.09100HepG2BOP1
CHN1ENSG00000128656.991.9004036.531901.330804.091103.34290HepG2DDX3X
CHN1ENSG00000128656.972.1366031.374401.201002.843602.21830HepG2DDX6
CHN1ENSG00000128656.9162.3779032.457302.3226012.4091011.00730HepG2EIF4B
CHN1ENSG00000128656.982.4603030.843001.418704.175303.06230HepG2GEMIN5
CHN1ENSG00000128656.938.2315098.91690-1.371504.416003.61930HepG2GPKOW
CHN1ENSG00000128656.964.10190127.88360-0.996404.244803.37780HepG2HNRNPF
CHN1ENSG00000128656.929.7632094.39850-1.665205.686004.81750HepG2HNRNPLL
CHN1ENSG00000128656.9129.0252054.494101.243403.542302.14870HepG2HSPD1
CHN1ENSG00000128656.962.53210125.92970-1.009904.138703.26760HepG2IGF2BP1
CHN1ENSG00000128656.979.9480031.719301.333603.846903.06280HepG2IGF2BP2
CHN1ENSG00000128656.9120.0109029.759402.011605.701404.31470HepG2IGF2BP3
CHN1ENSG00000128656.946.2932077.74120-0.747902.058501.41530HepG2ILF2
CHN1ENSG00000128656.977.6061033.832701.197702.926902.28080HepG2MATR3
CHN1ENSG00000128656.948.7489096.27950-0.981902.258301.38780HepG2MTPAP
CHN1ENSG00000128656.929.3590083.70410-1.511504.279603.35450HepG2NSUN2
CHN1ENSG00000128656.9116.6953061.909800.914402.804601.57870HepG2PRPF6
CHN1ENSG00000128656.981.6726041.653400.971302.028001.33210HepG2PRPF8
CHN1ENSG00000128656.965.5818033.283200.978402.092601.60430HepG2PTBP1
CHN1ENSG00000128656.9132.5251084.832000.643501.979301.40600HepG2PUM2
CHN1ENSG00000128656.9269.2188077.367901.7989011.1321010.24410HepG2RBM22
CHN1ENSG00000128656.990.1804037.044101.283503.918803.29610HepG2NELFE
CHN1ENSG00000128656.971.7102034.495901.055702.563601.96640HepG2RECQL
CHN1ENSG00000128656.918.0770055.82290-1.626703.817102.70740HepG2RPS10
CHN1ENSG00000128656.982.5216033.709601.291503.775603.06750HepG2RPS19
CHN1ENSG00000128656.9101.0133041.200701.293703.575302.69640HepG2RRP9
CHN1ENSG00000128656.933.6788067.77940-1.009002.629201.99870HepG2SAFB2
CHN1ENSG00000128656.9131.2899055.176901.250505.507704.53720HepG2SF3A3
CHN1ENSG00000128656.938.4015093.43440-1.282803.972903.14100HepG2SF3B1
CHN1ENSG00000128656.972.7108034.658801.068802.612902.03500HepG2SF3B4
CHN1ENSG00000128656.9134.3248079.047800.764803.054602.38310HepG2SMN1
CHN1ENSG00000128656.922.08670103.96270-2.234807.993506.66450HepG2SNRNP70
CHN1ENSG00000128656.9219.1118087.386001.3261010.160009.36390HepG2SRFBP1
CHN1ENSG00000128656.9102.1949036.173501.498205.647205.03130HepG2SRSF1
CHN1ENSG00000128656.952.19330125.63820-1.267305.949304.99170HepG2SRSF7
CHN1ENSG00000128656.942.1089075.87490-0.849502.160301.69300HepG2SSB
CHN1ENSG00000128656.949.9138092.01570-0.882402.407501.72460HepG2TARDBP
CHN1ENSG00000128656.932.1713073.97240-1.201203.513902.96400HepG2TIAL1
CHN1ENSG00000128656.9111.7692047.243101.242205.052504.28360HepG2UTP3
CHN1ENSG00000128656.9124.2870061.094101.024504.433203.61410HepG2ZC3H8
CHN1ENSG00000128656.947.2166018.005901.390702.383501.83240K562AQR
CHN1ENSG00000128656.966.9905010.656102.652209.492408.37170K562DDX47
CHN1ENSG00000128656.931.202904.988202.645003.420402.29200K562EIF3A
CHN1ENSG00000128656.918.626703.618102.364002.565901.77630K562EIF4A3
CHN1ENSG00000128656.921.930004.427902.308102.578301.38990K562HNRNPK
CHN1ENSG00000128656.929.426609.634301.610802.441701.45620K562HNRNPL
CHN1ENSG00000128656.960.4263013.406002.172206.217004.74370K562HNRNPM
CHN1ENSG00000128656.945.5205017.421701.385502.487501.71550K562PUF60
CHN1ENSG00000128656.957.576706.793903.083107.517706.15620K562RPS19
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHN1 is not available on ENCORE database.





3 RBPs can affect the splicing of CHN1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECHN1ENSG00000128656.9chr2-1757405151757405931757116071757116851757425671757426690.237000.000140.01075includedHepG2SFPQ
SECHN1ENSG00000128656.9chr2-1757405151757405931757116071757116851757425671757426690.306000.000080.02020includedHepG2HNRNPUL1
MXECHN1ENSG00000128656.9chr2-1757116071757116851757425671757428561756891611756892461757797851757798990.506000.000210.006011includedHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHN1 is not avaliable on ENCORE database.