CACNB1

General Information

Gene Name       : CACNB1
Gene ID             : ENSG00000067191.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CACNB1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CACNB1ENSG00000067191.152.404.323.36ENCSR000AEF
HepG2CACNB1ENSG00000067191.151.151.111.13ENCSR985KAT
K562CACNB1ENSG00000067191.152.572.002.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CACNB1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CACNB1 RNA is bound by 2 proteins.  







eCLIP assay for CACNB1 is not avaliable on ENCORE database.





2 proteins are bound to CACNB1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr173734927037349316-intron-Distal4.696213.72755K562EIF4G2
chr173734140437341550-intron-Distal,intron-Proximal4.664495.41525HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CACNB1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CACNB1 is not available on ENCORE database.

  • 62 RBPs can affect the levels of CACNB1.  








The Knockdown/knockout RNA-Seq assay for CACNB1 is not available on ENCORE database.





62 RBPs can affect the gene expression of CACNB1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CACNB1ENSG00000067191.1152.71390101.98710-0.952102.143901.31190HepG2ABCF1
CACNB1ENSG00000067191.11109.1056057.157000.932603.555202.88150HepG2ACO1
CACNB1ENSG00000067191.11106.3898062.800400.760401.824901.38290HepG2AKAP1
CACNB1ENSG00000067191.11165.5896095.086900.800203.104902.00420HepG2AKAP8
CACNB1ENSG00000067191.11106.5590057.426200.891803.192302.37530HepG2AKAP8L
CACNB1ENSG00000067191.11100.8215051.961900.956202.823402.03190HepG2ASCC1
CACNB1ENSG00000067191.11187.0612091.696101.028506.395005.41960HepG2AUH
CACNB1ENSG00000067191.11152.7814076.429100.999204.544802.98410HepG2BUD13
CACNB1ENSG00000067191.11252.93760101.835001.312408.069206.39300HepG2CCAR1
CACNB1ENSG00000067191.11144.3441082.119300.813603.745103.01970HepG2CELF1
CACNB1ENSG00000067191.11116.0523060.157800.947902.997802.34980HepG2DDX3X
CACNB1ENSG00000067191.11157.1004055.567501.499306.456005.33390HepG2DDX55
CACNB1ENSG00000067191.11171.4221051.677401.729804.596903.81810HepG2DDX6
CACNB1ENSG00000067191.11105.7850044.611901.245503.964003.13510HepG2DNAJC21
CACNB1ENSG00000067191.1174.5242044.235700.752402.004201.43250HepG2DNAJC2
CACNB1ENSG00000067191.11173.4240049.678101.8035010.910509.78070HepG2EIF2S1
CACNB1ENSG00000067191.11139.9765083.441500.746202.857702.03030HepG2EIF4G2
CACNB1ENSG00000067191.11171.87050105.270900.707103.101802.47110HepG2ETF1
CACNB1ENSG00000067191.11236.66910102.987101.200306.305305.18880HepG2FIP1L1
CACNB1ENSG00000067191.11133.0290051.384201.372206.177205.20090HepG2G3BP1
CACNB1ENSG00000067191.1193.5754054.569100.777902.499901.56660HepG2HDGF
CACNB1ENSG00000067191.11156.1090052.032401.585008.136906.98730HepG2HNRNPK
CACNB1ENSG00000067191.11120.9872080.406600.589402.107301.50900HepG2HNRNPL
CACNB1ENSG00000067191.11146.7442049.772301.559807.378706.42620HepG2HNRNPU
CACNB1ENSG00000067191.11179.70080103.530400.795403.074801.76900HepG2HSPD1
CACNB1ENSG00000067191.11146.0704052.230801.483607.315206.27130HepG2IGF2BP2
CACNB1ENSG00000067191.11122.9396065.792200.901902.852001.50520HepG2ILF3
CACNB1ENSG00000067191.11131.8859064.330601.035604.017702.53140HepG2KHDRBS1
CACNB1ENSG00000067191.1192.6215052.249200.825802.676901.67230HepG2KIF1C
CACNB1ENSG00000067191.11178.16400103.450900.784202.964901.67350HepG2KRR1
CACNB1ENSG00000067191.11192.40710107.642100.837803.397102.47710HepG2LARP4
CACNB1ENSG00000067191.11117.8126055.721901.080103.464402.76520HepG2MATR3
CACNB1ENSG00000067191.11141.3670057.034301.309405.675404.78330HepG2NCBP2
CACNB1ENSG00000067191.11131.2520087.536100.584302.103201.43630HepG2NOL12
CACNB1ENSG00000067191.11104.1313049.258601.079904.119003.10800HepG2PARN
CACNB1ENSG00000067191.11130.8511061.371801.092205.112004.32700HepG2PCBP1
CACNB1ENSG00000067191.11118.5441062.452000.924503.446102.84990HepG2PTBP1
CACNB1ENSG00000067191.11214.7858088.647801.276609.230108.04030HepG2PUM2
CACNB1ENSG00000067191.11196.6587089.826401.130407.015305.73410HepG2RBM15
CACNB1ENSG00000067191.11237.7270087.988801.4338011.5344010.62960HepG2RBM22
CACNB1ENSG00000067191.11117.4295069.499900.756602.396601.88690HepG2NELFE
CACNB1ENSG00000067191.11103.1992065.013700.666501.884201.38050HepG2SF3B4
CACNB1ENSG00000067191.1125.7202067.86300-1.399703.681103.15520HepG2SRSF1
CACNB1ENSG00000067191.11121.5157082.518600.558301.906301.37360HepG2SRSF5
CACNB1ENSG00000067191.11100.6346055.212600.866003.085602.50860HepG2SRSF9
CACNB1ENSG00000067191.1132.2932086.29360-1.418004.993504.34370HepG2SSB
CACNB1ENSG00000067191.11128.5089058.980401.123504.847503.35220HepG2STIP1
CACNB1ENSG00000067191.11137.6060061.005701.173403.859603.21610HepG2TAF15
CACNB1ENSG00000067191.11135.1922048.796801.470108.686607.77450HepG2TRIM56
CACNB1ENSG00000067191.11143.5367044.323301.695204.191202.96390HepG2U2AF2
CACNB1ENSG00000067191.1168.4875032.677601.067402.777502.01620HepG2UCHL5
CACNB1ENSG00000067191.1160.5789094.67350-0.644101.875101.40100HepG2ZNF622
CACNB1ENSG00000067191.11178.17380101.823800.807103.842003.07040K562AKAP8L
CACNB1ENSG00000067191.11152.32450271.59210-0.834303.699002.56580K562CELF1
CACNB1ENSG00000067191.11129.46060220.98000-0.771403.010702.03130K562EIF4G2
CACNB1ENSG00000067191.11126.7699078.787900.686102.153401.61830K562HNRNPC
CACNB1ENSG00000067191.11126.2872067.062300.913003.023501.93420K562IGF2BP2
CACNB1ENSG00000067191.1153.35170136.07920-1.350805.974204.74740K562PCBP3
CACNB1ENSG00000067191.1151.85820104.37410-1.009103.514802.60480K562POLR2G
CACNB1ENSG00000067191.11135.7550070.632800.942503.679502.61760K562PSIP1
CACNB1ENSG00000067191.11105.59760241.12150-1.191204.978603.88720K562PUF60
CACNB1ENSG00000067191.11125.17820256.35960-1.034203.796002.52740K562PUM1
CACNB1ENSG00000067191.11168.26490100.969300.736703.006302.44430K562PUS1
CACNB1ENSG00000067191.11154.1032065.521101.233803.603602.63380K562RBM22
CACNB1ENSG00000067191.11144.9867061.055001.247605.815304.17170K562SRFBP1
CACNB1ENSG00000067191.11140.2740067.838401.048004.735103.80190K562TARDBP
CACNB1ENSG00000067191.11114.11810171.42230-0.587002.363101.57500K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CACNB1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CACNB1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CACNB1 is not avaliable on ENCORE database.