C19orf47

General Information

Gene Name       : C19orf47
Gene ID             : ENSG00000160392.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C19orf47)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C19orf47ENSG00000160392.132.869.836.34ENCSR000AEF
HepG2C19orf47ENSG00000160392.139.944.397.16ENCSR985KAT
K562C19orf47ENSG00000160392.1313.2010.1911.70ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C19orf47 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C19orf47 RNA is bound by 11 proteins.  







eCLIP assay for C19orf47 is not avaliable on ENCORE database.





11 proteins are bound to C19orf47 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194082986240829916-3'-UTR,CDS,intron-Distal,intron-Proximal4.874885.69951K562AQR
chr194082719140827280-3'-UTR,intron-Distal,intron-Proximal3.897257.66579K562PABPC4
chr194082608240826159-3'-UTR,intron-Distal3.709923.01994HepG2GTF2F1
chr194082743740827502-3'-UTR,intron-Distal4.982648.88051HepG2PCBP2
chr194082728640827383-3'-UTR,intron-Distal,intron-Proximal3.962509.07238HepG2PCBP2
chr194082722440827289-3'-UTR,intron-Distal,intron-Proximal3.051204.26844K562DDX55
chr194082721540827276-3'-UTR,intron-Distal,intron-Proximal3.299457.59462K562UPF1
chr194082739740827437-3'-UTR,intron-Distal5.435756.57498HepG2PCBP2
chr194082608840826146-3'-UTR,intron-Distal3.483864.12529K562GTF2F1
chr194082607740826268-3'-UTR,intron-Distal5.229997.60978K562UPF1
chr194082728840827338-3'-UTR,intron-Distal,intron-Proximal4.548494.27202K562PABPC4
chr194083235940832446-3'-UTR,CDS,intron-Distal,intron-Proximal5.603319.95272K562AQR
chr194082751940827553-3'-UTR,intron-Distal3.669354.22415K562PTBP1
chr194082740740827511-3'-UTR,intron-Distal6.5167511.01250K562PCBP1
chr194084754340847757-5'-UTR,CDS,intron-Distal,intron-Proximal3.627144.58287K562PRPF8
chr194084200440842111-CDS,intron-Distal,intron-Proximal4.068363.18234K562BUD13
chr194084496040844989-intron-Distal4.998814.49449K562TROVE2
chr194084499140845047-intron-Distal5.179718.30256K562TROVE2
chr194083423140834320-intron-Distal,intron-Proximal4.942344.86944K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C19orf47 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C19orf47 is not available on ENCORE database.

  • 50 RBPs can affect the levels of C19orf47.  








The Knockdown/knockout RNA-Seq assay for C19orf47 is not available on ENCORE database.





50 RBPs can affect the gene expression of C19orf47 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C19orf47ENSG00000160392.9301.49070176.806700.769803.486402.43270HepG2ABCF1
C19orf47ENSG00000160392.9167.99550115.181700.544402.294001.61050HepG2DAZAP1
C19orf47ENSG00000160392.9237.99200130.178300.870304.291703.52710HepG2DDX3X
C19orf47ENSG00000160392.9101.95610172.79210-0.761102.164401.30360HepG2DDX59
C19orf47ENSG00000160392.9119.2783078.859200.596902.077301.49690HepG2DNAJC2
C19orf47ENSG00000160392.9228.35750119.909900.929204.775903.88290HepG2FXR1
C19orf47ENSG00000160392.9136.3549075.821500.846603.219302.24390HepG2GEMIN5
C19orf47ENSG00000160392.9128.7334088.757600.536301.838901.33540HepG2HNRNPU
C19orf47ENSG00000160392.9241.78870119.952101.011204.511803.67860HepG2MAGOH
C19orf47ENSG00000160392.9284.84120120.612201.239708.026606.99890HepG2MATR3
C19orf47ENSG00000160392.9309.50450123.444101.3260010.033308.87150HepG2NCBP2
C19orf47ENSG00000160392.9209.93320114.214000.878102.886202.10740HepG2NOL12
C19orf47ENSG00000160392.9132.2239079.164900.739902.927802.17190HepG2PPIL4
C19orf47ENSG00000160392.9160.96450109.027600.561901.979001.46350HepG2PUF60
C19orf47ENSG00000160392.9182.93750115.738000.660403.355802.71630HepG2PUM1
C19orf47ENSG00000160392.9114.23930183.13020-0.680803.262002.33920HepG2RBM15
C19orf47ENSG00000160392.9144.3764082.882200.800602.961202.32910HepG2RPS19
C19orf47ENSG00000160392.9104.6468061.912700.757102.026501.34220HepG2RPS3A
C19orf47ENSG00000160392.9306.15900204.940700.579002.725702.05670HepG2SF3A3
C19orf47ENSG00000160392.9192.03080107.649300.834904.600303.82890HepG2SRSF5
C19orf47ENSG00000160392.9256.61460122.426501.067608.935307.92500HepG2SUCLG1
C19orf47ENSG00000160392.977.43740136.30710-0.815803.064202.47830HepG2TAF15
C19orf47ENSG00000160392.9133.4385086.248900.629502.171501.71740HepG2TIAL1
C19orf47ENSG00000160392.9200.79730106.516000.914604.852003.66170HepG2TUFM
C19orf47ENSG00000160392.9259.78610152.664800.766903.628302.91330HepG2U2AF1
C19orf47ENSG00000160392.9211.98230112.745900.910803.758802.77670HepG2UBE2L3
C19orf47ENSG00000160392.9467.79550644.17290-0.461603.661802.53520K562CELF1
C19orf47ENSG00000160392.9595.79020457.362900.381402.336301.72930K562DDX47
C19orf47ENSG00000160392.9380.09550211.453200.845905.434403.92040K562EIF3D
C19orf47ENSG00000160392.9204.6801094.313401.117706.779605.54680K562EIF3G
C19orf47ENSG00000160392.9243.10500382.48720-0.653803.218401.44700K562ESF1
C19orf47ENSG00000160392.9383.27360180.452501.0867011.4441010.29960K562FXR1
C19orf47ENSG00000160392.922.7326063.19300-1.475003.797802.94010K562G3BP2
C19orf47ENSG00000160392.9443.72610295.877500.584603.428702.38370K562HNRNPM
C19orf47ENSG00000160392.9255.32610357.82890-0.486902.376801.62090K562KIF1C
C19orf47ENSG00000160392.9138.83730241.04860-0.795902.666501.75330K562KRR1
C19orf47ENSG00000160392.9220.66590132.556400.735203.161702.26110K562MAGOH
C19orf47ENSG00000160392.9200.82770132.270200.602402.806901.87750K562MATR3
C19orf47ENSG00000160392.9218.24980117.921600.888104.792003.49700K562PCBP2
C19orf47ENSG00000160392.9356.90070128.795301.4703018.0180016.39740K562PTBP1
C19orf47ENSG00000160392.9247.15480123.437301.001506.906405.50720K562RBM22
C19orf47ENSG00000160392.9235.20560120.375300.966305.358703.22680K562RBM34
C19orf47ENSG00000160392.9285.51260207.615800.459502.177801.30290K562RCC2
C19orf47ENSG00000160392.9306.55720195.765800.646903.010402.15810K562RPS19
C19orf47ENSG00000160392.9470.06620294.064700.676605.326903.82260K562SAFB
C19orf47ENSG00000160392.9378.56560205.773400.879403.191801.75500K562SFPQ
C19orf47ENSG00000160392.9305.52300196.817700.634302.853001.80880K562SRFBP1
C19orf47ENSG00000160392.9227.66150126.275100.850203.570302.77390K562SRSF1
C19orf47ENSG00000160392.9181.42550119.288800.604802.408801.43910K562SRSF5
C19orf47ENSG00000160392.9306.69700471.94930-0.621804.309702.58210K562SSRP1
C19orf47ENSG00000160392.9444.95070331.019700.426602.717901.90670K562SYNCRIP
C19orf47ENSG00000160392.9195.28740127.771200.611902.614601.92560K562TARDBP
C19orf47ENSG00000160392.9200.26390123.256900.700103.274502.37370K562TIA1
C19orf47ENSG00000160392.9279.65480412.55640-0.560903.160501.86970K562UTP3
C19orf47ENSG00000160392.9283.19870387.81810-0.453602.640401.78330K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C19orf47 is not available on ENCORE database.





5 RBPs can affect the splicing of C19orf47 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC19orf47ENSG00000160392.9chr19-4084074140840811408397574083983640842016408421310.165000.000020.03741includedK562DHX30
SEC19orf47ENSG00000160392.9chr19-4083842840838550408343194083445740839757408398360.053000.001120.09587includedK562CPSF6
SEC19orf47ENSG00000160392.9chr19-4083842840838550408343194083445740839757408398360.111000.001750.03044includedK562HNRNPC
A3SSC19orf47ENSG00000160392.9chr19-4083431940834555408343194083445740839757408398360.147000.000000.00000longerK562AQR
A3SSC19orf47ENSG00000160392.9chr19-4083975740839857408397574083983640842016408421310.069000.017540.08527longerK562AQR
A5SSC19orf47ENSG00000160392.9chr19-408476924084779740847745408477974084222640842314-0.396000.000590.07619shorterHepG2NCBP2
MXEC19orf47ENSG00000160392.9chr19-40834319408344574083975740839857408322404083239340842016408421310.213000.001960.016341includedK562AQR
MXEC19orf47ENSG00000160392.9chr19-40832240408323934083431940834494408299124082998340839757408398360.157000.006270.043471includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C19orf47 is not avaliable on ENCORE database.