C11orf73

General Information

Gene Name       : C11orf73
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C11orf73)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C11orf73 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C11orf73 RNA is bound by 9 proteins.  







eCLIP assay for C11orf73 is not avaliable on ENCORE database.





9 proteins are bound to C11orf73 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr118605603686056119+3'-UTR,intron-Distal,intron-Proximal4.112236.89441K562KHSRP
chr118605577486055848+3'-UTR,CDS,intron-Proximal6.1045912.46873K562AQR
chr118605586186055925+3'-UTR,intron-Distal,intron-Proximal5.2221710.72437K562KHSRP
chr118604846986048576+3'-UTR,CDS,intron-Proximal4.522998.25168K562TROVE2
chr118605592586056026+3'-UTR,intron-Distal4.3924510.83474K562KHSRP
chr118605576086055774+3'-UTR,CDS,intron-Proximal5.429357.23718K562AQR
chr118605576386055813+3'-UTR,CDS,intron-Proximal4.751116.15361K562PRPF8
chr118605585886055926+3'-UTR,intron-Distal,intron-Proximal3.749707.95328K562PRPF8
chr118601330786013470+5'-UTR3.310745.42487HepG2NCBP2
chr118601341086013487+5'-UTR4.1787110.83085K562DDX3X
chr118601348986013520+5'-UTR,CDS3.335296.22708K562DDX3X
chr118601333986013410+5'-UTR5.5909221.21388K562DDX3X
chr118601728686017314+CDS,intron-Distal,intron-Proximal3.080513.74019K562DDX3X
chr118601736286017412+CDS,intron-Distal3.903004.71162K562LIN28B
chr118605354086053622+intron-Distal4.215654.13641K562TARDBP
chr118605344086053497+intron-Distal3.939003.49011K562KHSRP
chr118602151786021559+intron-Distal3.846053.01445K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C11orf73 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C11orf73 is not available on ENCORE database.

  • 30 RBPs can affect the levels of C11orf73.  








The Knockdown/knockout RNA-Seq assay for C11orf73 is not available on ENCORE database.





30 RBPs can affect the gene expression of C11orf73 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C11orf73ENSG00000149196.11325.74170243.545300.419401.899801.39580HepG2BOP1
C11orf73ENSG00000149196.11416.79510323.967400.363402.024401.35780HepG2CALR
C11orf73ENSG00000149196.11154.82730223.58680-0.530202.067801.46290HepG2CPSF6
C11orf73ENSG00000149196.11354.26040277.990900.349702.154301.56520HepG2DNAJC2
C11orf73ENSG00000149196.11417.60570312.916300.416302.838602.22440HepG2HNRNPU
C11orf73ENSG00000149196.11404.50030319.636500.339602.322201.64360HepG2ILF2
C11orf73ENSG00000149196.11356.87730499.13900-0.484002.312601.40800HepG2KHSRP
C11orf73ENSG00000149196.11371.53820529.48100-0.511102.536301.92990HepG2MATR3
C11orf73ENSG00000149196.11252.85010369.82860-0.548602.091501.33620HepG2PABPC1
C11orf73ENSG00000149196.11209.76060320.55310-0.611802.718001.68730HepG2PCBP2
C11orf73ENSG00000149196.11412.20720551.61590-0.420303.869203.19330HepG2PUM1
C11orf73ENSG00000149196.11442.13410551.21610-0.318101.888601.32840HepG2PUM2
C11orf73ENSG00000149196.11117.53440309.27160-1.395807.916306.76040HepG2RAVER1
C11orf73ENSG00000149196.11347.63850509.74290-0.552204.137403.32710HepG2RBM25
C11orf73ENSG00000149196.11432.10230537.53950-0.315002.033401.49390HepG2RECQL
C11orf73ENSG00000149196.11394.79070539.93400-0.451703.592702.93130HepG2SF3B4
C11orf73ENSG00000149196.11795.31360686.764300.211601.734701.30930HepG2SRFBP1
C11orf73ENSG00000149196.11401.95740513.06300-0.352102.500301.90100HepG2SRSF5
C11orf73ENSG00000149196.11272.59000458.49590-0.750208.314507.44950HepG2SRSF9
C11orf73ENSG00000149196.11377.14450537.34310-0.510702.530601.73170HepG2UBE2L3
C11orf73ENSG00000149196.11294.13290219.510500.422101.971801.33110HepG2UCHL5
C11orf73ENSG00000149196.11515.38330365.764400.494603.004702.24950HepG2XRN2
C11orf73ENSG00000149196.11882.23320710.315000.312602.718402.15450K562AGGF1
C11orf73ENSG00000149196.11622.51040452.256000.460902.865801.97760K562BOP1
C11orf73ENSG00000149196.11791.08110631.840500.324202.765601.55360K562DDX21
C11orf73ENSG00000149196.11433.04260556.12460-0.360902.142601.41600K562EIF4A3
C11orf73ENSG00000149196.111057.79840831.331000.347502.401701.65690K562HSPD1
C11orf73ENSG00000149196.11757.11970635.507200.252502.093601.43440K562NSUN2
C11orf73ENSG00000149196.11622.75400476.447700.386202.287801.60330K562PRPF8
C11orf73ENSG00000149196.11473.03850635.44480-0.425802.161301.42320K562RBM22
C11orf73ENSG00000149196.11340.00280524.33820-0.625005.825704.55360K562SF3B4
C11orf73ENSG00000149196.11734.40040576.584100.348902.490501.65710K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C11orf73 is not available on ENCORE database.





8 RBPs can affect the splicing of C11orf73 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC11orf73ENSG00000149196.11chr11+860172868601752486013292860135208604842086048572-0.086000.000090.00274excludedK562SRSF1
SEC11orf73ENSG00000149196.11chr11+860375548603771886017286860175248604842086048572-0.052000.001220.01665excludedHepG2U2AF2
SEC11orf73ENSG00000149196.11chr11+8605613586056240860556448605576386056625860567050.123000.000000.00003includedK562AQR
SEC11orf73ENSG00000149196.11chr11+8603755486037718860172868601752486048420860485720.051000.000020.00039includedK562AQR
SEC11orf73ENSG00000149196.11chr11+860172868601752486013292860135208604842086048534-0.100000.000000.00000excludedK562AQR
SEC11orf73ENSG00000149196.11chr11+8603755486037718860172868601752486048420860485720.077000.000000.00198includedK562HNRNPA1
SEC11orf73ENSG00000149196.11chr11+860172868601751286013252860135208604842086048572-0.069000.000590.01104excludedK562PUS1
SEC11orf73ENSG00000149196.11chr11+860172868601752486013292860135208604842086048572-0.065000.004020.07508excludedHepG2SRSF1
SEC11orf73ENSG00000149196.11chr11+8605613586056240860556448605576386056625860567050.133000.000190.01019includedK562HNRNPU
SEC11orf73ENSG00000149196.11chr11+8603755486037718860172868601752486048420860485720.128000.000090.00586includedK562SF3B1
SEC11orf73ENSG00000149196.11chr11+8603755486037718860172868601752486048420860485720.128000.000010.00033includedK562HNRNPC
MXEC11orf73ENSG00000149196.11chr11+8601728686017512860375548603771886013292860135208604842086048572-0.163000.003010.098852includedK562SF3B1
MXEC11orf73ENSG00000149196.11chr11+86037554860377188604842086048534860172868601752486055644860562710.054000.000560.005501includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C11orf73 is not avaliable on ENCORE database.