C11orf1

General Information

Gene Name       : C11orf1
Gene ID             : ENSG00000137720.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C11orf1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C11orf1ENSG00000137720.767.9057.4262.66ENCSR000AEF
HepG2C11orf1ENSG00000137720.731.2032.5931.90ENCSR985KAT
K562C11orf1ENSG00000137720.742.1643.5842.87ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C11orf1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C11orf1 RNA is bound by 1 proteins.  







eCLIP assay for C11orf1 is not avaliable on ENCORE database.





1 proteins are bound to C11orf1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11111753133111753206+3'-UTR,CDS3.050825.54400K562YBX3
chr11111753206111753275+CDS3.100293.87559K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C11orf1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C11orf1 is not available on ENCORE database.

  • 51 RBPs can affect the levels of C11orf1.  








The Knockdown/knockout RNA-Seq assay for C11orf1 is not available on ENCORE database.





51 RBPs can affect the gene expression of C11orf1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C11orf1ENSG00000137720.3327.05710198.334200.721503.418102.37590HepG2ABCF1
C11orf1ENSG00000137720.3180.01280127.424400.498402.094101.55040HepG2ACO1
C11orf1ENSG00000137720.3461.91010257.976800.840305.528804.80750HepG2AKAP1
C11orf1ENSG00000137720.3266.59210195.454900.447702.091301.41300HepG2CALR
C11orf1ENSG00000137720.3186.09160127.346800.547202.481101.84440HepG2CKAP4
C11orf1ENSG00000137720.3230.49620154.206000.579802.534301.88220HepG2DDX21
C11orf1ENSG00000137720.3234.82620145.409100.691403.281002.44910HepG2DDX55
C11orf1ENSG00000137720.3226.59310158.155600.518702.515301.84070HepG2DNAJC21
C11orf1ENSG00000137720.3333.38520242.554500.458802.985402.36450HepG2ETF1
C11orf1ENSG00000137720.3115.64150197.14630-0.769603.641702.74730HepG2FUBP3
C11orf1ENSG00000137720.3268.21520167.693800.677503.123502.44820HepG2GPKOW
C11orf1ENSG00000137720.3256.25130159.671300.682402.103801.53180HepG2HNRNPA1
C11orf1ENSG00000137720.3257.07560180.230800.512202.655401.93620HepG2ILF2
C11orf1ENSG00000137720.3243.59710162.073100.587802.617201.83090HepG2MSI2
C11orf1ENSG00000137720.358.46890113.76160-0.960302.842901.94030HepG2PABPC1
C11orf1ENSG00000137720.3239.17790174.630400.453702.049401.31150HepG2PARN
C11orf1ENSG00000137720.3168.84060231.08980-0.452802.075201.53700HepG2PCBP1
C11orf1ENSG00000137720.3243.01090151.770900.679004.069203.15020HepG2PRPF4
C11orf1ENSG00000137720.3166.48400235.14300-0.498202.502201.97770HepG2PTBP1
C11orf1ENSG00000137720.3356.79300227.793900.647303.991603.29070HepG2PUF60
C11orf1ENSG00000137720.3150.04090254.66460-0.763204.450303.68450HepG2QKI
C11orf1ENSG00000137720.377.28340181.00120-1.227804.723703.81570HepG2RAVER1
C11orf1ENSG00000137720.3279.85030202.734200.465002.317501.83220HepG2RBM22
C11orf1ENSG00000137720.377.70030231.12490-1.5727012.5851011.21120HepG2RBM25
C11orf1ENSG00000137720.3356.96610246.124800.536302.995902.28830HepG2RPLP0
C11orf1ENSG00000137720.3379.20100176.250601.105202.832702.04310HepG2SNRNP70
C11orf1ENSG00000137720.3359.61820255.532500.492902.940502.45670HepG2SRSF1
C11orf1ENSG00000137720.3131.61850224.89760-0.772904.693003.91430HepG2SRSF5
C11orf1ENSG00000137720.3165.55020224.46860-0.439201.984701.38430HepG2SRSF7
C11orf1ENSG00000137720.3273.08500198.826100.457702.526102.03100HepG2SSB
C11orf1ENSG00000137720.3248.11340144.778200.777102.374701.74190HepG2SUPV3L1
C11orf1ENSG00000137720.3308.08170229.683600.423602.093401.59290HepG2TAF15
C11orf1ENSG00000137720.3248.91900139.299700.837402.836301.75670HepG2TBRG4
C11orf1ENSG00000137720.3136.75930211.04690-0.625903.043502.17200HepG2TIA1
C11orf1ENSG00000137720.3308.40100171.387900.847406.498705.79190HepG2TIAL1
C11orf1ENSG00000137720.3242.66030169.449100.518002.657602.07060HepG2UTP3
C11orf1ENSG00000137720.3236.68810142.517500.731703.763902.92660HepG2XRN2
C11orf1ENSG00000137720.3212.75700149.776600.506302.391301.76100HepG2ZC3H8
C11orf1ENSG00000137720.3324.36960223.051000.540202.932002.08720K562EIF4A3
C11orf1ENSG00000137720.3504.25630375.253900.426202.605201.78300K562FIP1L1
C11orf1ENSG00000137720.3185.11240350.51120-0.921107.091906.17870K562HNRNPC
C11orf1ENSG00000137720.3260.99110377.29140-0.531703.652302.62550K562HNRNPU
C11orf1ENSG00000137720.3745.90810508.740400.552004.616303.59420K562HSPD1
C11orf1ENSG00000137720.3575.55350395.893800.539703.377702.45810K562PCBP3
C11orf1ENSG00000137720.3449.65220303.670400.566203.567102.65080K562POLR2G
C11orf1ENSG00000137720.3579.63800426.012200.444202.938502.08960K562PPIG
C11orf1ENSG00000137720.3200.86620279.04810-0.474302.465801.83300K562PTBP1
C11orf1ENSG00000137720.3393.74840281.627500.483402.688501.61290K562NELFE
C11orf1ENSG00000137720.3689.79010492.331500.486403.441801.89970K562SSRP1
C11orf1ENSG00000137720.3418.54580262.050100.675404.256602.84140K562U2AF1
C11orf1ENSG00000137720.3485.21990270.627900.842209.042307.58420K562U2AF2
C11orf1ENSG00000137720.3240.11450346.94290-0.531003.262002.31570K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C11orf1 is not available on ENCORE database.





10 RBPs can affect the splicing of C11orf1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC11orf1ENSG00000137720.3chr11+111752208111752339111750284111750329111753091111753322-0.065000.000290.00963excludedHepG2HNRNPK
SEC11orf1ENSG00000137720.3chr11+111753859111753926111753091111753322111754494111756699-0.287000.000010.00015excludedHepG2U2AF2
SEC11orf1ENSG00000137720.3chr11+111752208111752339111750284111750329111753091111753322-0.057000.000090.00946excludedHepG2AKAP1
SEC11orf1ENSG00000137720.3chr11+111753859111753926111753091111753322111754494111756699-0.090000.000350.00500excludedK562AQR
SEC11orf1ENSG00000137720.3chr11+111753859111753926111753091111753322111754494111756699-0.254000.000000.00002excludedHepG2SRSF7
SEC11orf1ENSG00000137720.3chr11+111753859111753926111753091111753322111754494111756699-0.213000.000000.00001excludedK562U2AF1
SEC11orf1ENSG00000137720.3chr11+1117538591117539261117530911117533221117544941117566990.173000.000000.00004includedHepG2HNRNPL
SEC11orf1ENSG00000137720.3chr11+1117538591117539261117530911117533221117544941117566990.055000.000000.00052includedK562HNRNPL
SEC11orf1ENSG00000137720.3chr11+1117538591117539261117530911117533221117544941117566990.096000.001200.03536includedHepG2SF3A3
SEC11orf1ENSG00000137720.3chr11+111753859111753926111753091111753322111754494111756699-0.124000.000040.01027excludedK562SRSF7
SEC11orf1ENSG00000137720.3chr11+111753859111753926111753091111753322111754494111756699-0.238000.000000.00000excludedK562U2AF2
SEC11orf1ENSG00000137720.3chr11+111753859111753926111753091111753322111754494111756699-0.077000.001480.03667excludedK562RBM15
SEC11orf1ENSG00000137720.3chr11+111753859111753926111753091111753322111754494111756699-0.086000.000580.01785excludedK562AGGF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C11orf1 is not avaliable on ENCORE database.