CXXC1

General Information

Gene Name       : CXXC1
Gene ID             : ENSG00000154832.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CXXC1)


Antibody Validation

 View validation images for all CXXC1 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CXXC1ENSG00000154832.1435.6247.6441.63ENCSR000AEF
HepG2CXXC1ENSG00000154832.1466.0633.7049.88ENCSR985KAT
K562CXXC1ENSG00000154832.1437.0027.1332.06ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq CXXC1-BGKcLV17-K562ENCSR416NPLCXXC1K562ReleasedENCSR516TLX   CRISPRKD% = 71.6,67.9
knockdown followed by RNA-seq CXXC1-BGHcLV18-HepG2ENCSR666FOSCXXC1HepG2ReleasedENCSR670KAS   CRISPRKD% = 86.8,91.2






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
CXXC1ENCAB216VRJPA5-76829UC2739251ANotSatisfied, ENCODE4BGHcLV18-7, Released, ENCODE4
CXXC140672S1Submitted, ENCORE2BGHcLV18-7, Released, ENCODE4BGKcLV17-7, Experimented, ENCORE2


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
CXXC1K562CRISPRENCSR416NPLENCSR516TLXCXXC1-BGKcLV17-7,CXXC1-BGKcLV17-8NT-BGKcLV17-1,NT-BGKcLV17-271.6,67.9ReleasedENCODE4
CXXC1HepG2CRISPRENCSR666FOSENCSR670KASCXXC1-BGHcLV18-7,CXXC1-BGHcLV18-8NT-BGHcLV18-1,NT-BGHcLV18-286.8,91.2ReleasedENCODE4
CXXC1Ribo-STAMP-293TshRNACXXC1-BGRSLV03-19,CXXC1-BGRSLV03-20NT-BGRSLV03-1,NT-BGRSLV03-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
CXXC1Product_ID: PA5-76829
Lot_ID: UC2739251A
Source: Thermo Fisher
Target Name: CXXC1-human		 CXXC1-HEPG2-CRISPR-PA5-76829.png<br>Caption: Western blot following CRISPR against CXXC1 in HepG2 whole cell lysate using CXXC1 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against CXXC1. CXXC1 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.
 ThermoFisher_PA5-76829_UC2739251A_CXXC1.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the CXXC1 specific antibody, PA5-76829. Lane 1 is 2.5% of five million whole cell lysate input. Lanes 2 and 3 are 50% of IP enrichment from five million whole cell lysate using normal IgG antibody and the CXXC1-specific antibody, PA5-76829. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
CXXC1Product_ID: 40672S
Lot_ID: 1
Source: Cell Signaling Technology
Target Name: CXXC1-human		 CST_40672S_1_CXXC1.png<br>Caption: IP-WB analysis of 40672S whole cell lysate using the CXXC1 specific antibody, 40672S. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the CXXC1-specific antibody, 40672S. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
 CXXC1-K562-CRISPR-40672S.png<br>Caption: Western blot following CRISPR against CXXC1 in K562 whole cell lysate using CXXC1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against CXXC1. CXXC1 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.








RNA Targets

  • eCLIP assay for CXXC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CXXC1 RNA is bound by 18 proteins.  







eCLIP assay for CXXC1 is not avaliable on ENCORE database.





18 proteins are bound to CXXC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr184780882747808889-3'-UTR,intron-Distal,intron-Proximal3.557884.22460K562RBM15
chr184780899647809107-3'-UTR,CDS,intron-Distal4.434589.72826K562RBM15
chr184781387247813940-5'-UTR,intron-Distal,intron-Proximal4.6663110.81562K562AQR
chr184781384747813936-5'-UTR,intron-Distal,intron-Proximal5.9326321.39404HepG2EFTUD2
chr184781395847813977-5'-UTR,CDS,intron-Distal,intron-Proximal3.117364.30396K562UCHL5
chr184781400747814048-5'-UTR,intron-Distal,intron-Proximal4.002193.73331K562RBM15
chr184781383047813935-5'-UTR,intron-Distal,intron-Proximal7.1831147.03426K562EFTUD2
chr184781040247810447-CDS,intron-Distal,intron-Proximal4.991477.60796HepG2PPIG
chr184781226847812356-CDS,intron-Distal,intron-Proximal4.0348012.69566K562PRPF8
chr184781110147811123-CDS,intron-Distal,intron-Proximal4.575514.38106HepG2PPIG
chr184781247447812537-CDS,intron-Distal,intron-Proximal4.228486.28735K562DDX24
chr184781295347813008-CDS,intron-Distal3.237249.10317K562ZNF622
chr184781040247810470-CDS,intron-Distal,intron-Proximal3.022994.55250HepG2GRWD1
chr184781236847812415-CDS,intron-Distal,intron-Proximal4.717266.01989HepG2PRPF8
chr184781081347810877-CDS,intron-Distal4.2313215.82205K562ZNF622
chr184781250047812551-CDS,intron-Distal,intron-Proximal4.769628.08215HepG2EFTUD2
chr184781313747813185-CDS,intron-Distal4.334997.52225K562UCHL5
chr184781214547812186-CDS,intron-Distal,intron-Proximal3.197465.39278K562ZNF622
chr184781318247813236-CDS,intron-Distal,intron-Proximal5.177996.72588HepG2BUD13
chr184781149047811525-CDS,intron-Distal,intron-Proximal3.916003.86058K562GRWD1
chr184781164747811700-CDS,intron-Distal,intron-Proximal4.5355110.42975HepG2PRPF8
chr184780922547809274-CDS,intron-Distal,intron-Proximal3.249683.73413HepG2PPIG
chr184781092947810977-CDS,intron-Distal,intron-Proximal3.521364.37001K562EFTUD2
chr184781249747812562-CDS,intron-Distal,intron-Proximal3.129743.72699HepG2PRPF4
chr184781026547810307-CDS,intron-Distal,intron-Proximal3.957764.01763HepG2GRWD1
chr184781239647812446-CDS,intron-Distal,intron-Proximal4.958408.42614HepG2EFTUD2
chr184780971647809772-CDS,intron-Distal,intron-Proximal3.231774.98422K562PRPF8
chr184781042247810480-CDS,intron-Distal,intron-Proximal3.004948.88810K562BUD13
chr184781292647813005-CDS,intron-Distal3.453166.00907HepG2PPIG
chr184781238647812453-CDS,intron-Distal,intron-Proximal4.5083617.08595K562EFTUD2
chr184780984047809898-CDS,intron-Distal,intron-Proximal4.940996.01989HepG2PRPF8
chr184781092147810974-CDS,intron-Distal,intron-Proximal4.3413610.90247K562SF3B4
chr184781291247812953-CDS,intron-Distal3.851888.04012K562ZNF622
chr184781079147810874-CDS,intron-Distal,intron-Proximal6.2306616.44087K562UCHL5
chr184781228347812311-CDS,intron-Distal,intron-Proximal3.834435.34865HepG2EFTUD2
chr184781026247810317-CDS,intron-Distal,intron-Proximal4.0396912.29278K562ZNF622
chr184781143147811530-CDS,intron-Distal,intron-Proximal4.593086.03821HepG2GRWD1
chr184781320647813288-CDS,intron-Distal,intron-Proximal5.962508.42776K562SF3B4
chr184781012147810134-CDS,intron-Distal3.334643.34848HepG2PPIG
chr184781007847810144-CDS,intron-Distal3.118723.17744HepG2GRWD1
chr184781162647811702-CDS,intron-Distal,intron-Proximal5.247809.66958K562RBFOX2
chr184781163747811698-CDS,intron-Distal,intron-Proximal3.204108.78542K562BUD13
chr184780925247809331-CDS,intron-Distal,intron-Proximal3.194723.85127HepG2GRWD1
chr184781039947810467-CDS,intron-Distal,intron-Proximal3.560753.84837K562GRWD1
chr184781394047813958-CDS,intron-Distal,intron-Proximal3.596404.88100K562AQR
chr184780935447809425-CDS,intron-Distal,intron-Proximal5.9694320.65991K562SF3B4
chr184781042447810470-CDS,intron-Distal,intron-Proximal3.480998.71976K562ZNF622
chr184781318747813230-CDS,intron-Distal,intron-Proximal3.062484.09741HepG2PPIG
chr184781147047811532-CDS,intron-Distal,intron-Proximal3.8961812.81426K562ZNF622
chr184781226847812353-CDS,intron-Distal,intron-Proximal4.8155511.38882K562BUD13
chr184781077347810883-CDS,intron-Distal,intron-Proximal3.477999.71090HepG2PPIG
chr184781088347810929-CDS,intron-Distal5.288098.25598HepG2PPIG
chr184781249547812569-CDS,intron-Distal,intron-Proximal5.539588.55457HepG2PPIG
chr184781295447813007-CDS,intron-Distal4.131583.79347HepG2GRWD1
chr184781229747812356-CDS,intron-Distal,intron-Proximal5.5256917.49622K562EFTUD2
chr184781087747810932-CDS,intron-Distal3.4130110.78542K562ZNF622
chr184781089147810930-CDS,intron-Distal3.791043.56019HepG2GRWD1
chr184781229047812350-CDS,intron-Distal,intron-Proximal4.6379512.81671K562SF3B4
chr184780972747809765-CDS,intron-Distal,intron-Proximal3.860594.00320K562AQR
chr184781240547812474-CDS,intron-Distal,intron-Proximal3.796995.21950K562DDX24
chr184781311147813116-CDS,intron-Distal3.922006.29174K562ZNF622
chr184780929647809342-CDS,intron-Distal3.695874.68902HepG2PPIG
chr184781080347810885-CDS,intron-Distal3.007295.46454K562GRWD1
chr184781044247810496-CDS,intron-Distal,intron-Proximal5.7007110.07464K562SF3B4
chr184781079447810889-CDS,intron-Distal,intron-Proximal3.562794.24070HepG2GRWD1
chr184781087447810931-CDS,intron-Distal3.9530211.62230K562UCHL5
chr184781249247812535-CDS,intron-Distal,intron-Proximal3.687477.97712K562BUD13
chr184781026247810301-CDS,intron-Distal,intron-Proximal3.186453.47879HepG2PPIG
chr184781008847810148-CDS,intron-Distal3.050148.82455K562ZNF622
chr184781198047812054-intron-Distal,intron-Proximal5.2096510.93557HepG2EFTUD2
chr184781020047810221-intron-Distal,intron-Proximal5.126945.90023K562SF3B4
chr184781162147811685-intron-Distal,intron-Proximal5.3207710.00219HepG2RBFOX2
chr184781172647811829-intron-Distal,intron-Proximal4.3535513.97564K562RBFOX2
chr184781178547811824-intron-Distal,intron-Proximal5.969069.06724K562EFTUD2
chr184781196447812028-intron-Distal,intron-Proximal4.556273.81265K562MTPAP
chr184781070147810748-intron-Distal,intron-Proximal3.394268.69914K562AQR
chr184781301947813062-intron-Distal,intron-Proximal4.553146.80961HepG2EFTUD2
chr184780939547809600-intron-Distal,intron-Proximal4.385239.34471K562PCBP1
chr184781195347812027-intron-Distal,intron-Proximal3.802965.52268HepG2RBFOX2
chr184781205647812114-intron-Distal,intron-Proximal3.941806.81262HepG2RBFOX2
chr184780996047810009-intron-Distal,intron-Proximal4.218553.31322HepG2SF3B4
chr184781323447813296-intron-Distal,intron-Proximal4.3375412.85356K562EFTUD2
chr184780994147809995-intron-Distal,intron-Proximal5.5064316.24956K562SF3B4
chr184781197247812037-intron-Distal,intron-Proximal3.915628.57151K562RBFOX2
chr184780980647809821-intron-Distal,intron-Proximal3.492353.99908K562BUD13
chr184780940847809462-intron-Distal,intron-Proximal5.4321510.11308HepG2PCBP2
chr184781176147811852-intron-Distal,intron-Proximal3.369666.37884K562MTPAP
chr184781305047813110-intron-Distal,intron-Proximal4.910297.02967HepG2PRPF8
chr184781172347811792-intron-Distal,intron-Proximal5.474075.03841K562AATF
chr184781177447811838-intron-Distal,intron-Proximal3.8636911.76463K562BUD13
chr184780979347809825-intron-Distal,intron-Proximal3.323763.56873HepG2PRPF8
chr184780994147810009-intron-Distal,intron-Proximal3.413158.70001HepG2PRPF8
chr184781172947811758-intron-Distal,intron-Proximal4.749646.66402K562BUD13
chr184781177047811877-intron-Distal,intron-Proximal3.9947014.00808HepG2RBFOX2
chr184780994147810017-intron-Distal,intron-Proximal4.956246.03362HepG2AQR
chr184781206347812095-intron-Distal,intron-Proximal3.136503.18634K562MTPAP
chr184781362747813679-intron-Distal5.393069.40065K562EFTUD2
chr184781205647812100-intron-Distal,intron-Proximal4.394925.46259K562RBFOX2
chr184781173047811778-intron-Distal,intron-Proximal3.952773.86417HepG2PRPF4
chr184781198147812023-intron-Distal,intron-Proximal5.4403910.65697K562UCHL5
chr184781353147813587-intron-Distal,intron-Proximal4.369647.47754K562EFTUD2
chr184781176047811766-intron-Distal,intron-Proximal3.752115.14848K562ZNF622
chr184780995247810000-intron-Distal,intron-Proximal5.060685.56900K562XRCC6
chr184781199547812038-intron-Distal,intron-Proximal6.100589.06724K562EFTUD2
chr184781165147811692-intron-Distal,intron-Proximal3.746827.52358K562UCHL5
chr184780980047809880-intron-Distal,intron-Proximal3.548754.40430HepG2AQR
chr184781198247812022-intron-Distal,intron-Proximal3.960496.34541K562BUD13
chr184780951047809609-intron-Distal,intron-Proximal5.598869.00303HepG2PCBP2
chr184780980347809827-intron-Distal,intron-Proximal4.265365.26108K562SF3B4
chr184781182947811896-intron-Distal,intron-Proximal3.362868.62711K562RBFOX2
chr184780995147809993-intron-Distal,intron-Proximal3.503166.63359K562BUD13
chr184781164347811695-intron-Distal,intron-Proximal4.451398.50824K562ZNF622
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CXXC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CXXC1 is not available on ENCORE database.

  • 93 RBPs can affect the levels of CXXC1.  








The Knockdown/knockout RNA-Seq assay for CXXC1 is not available on ENCORE database.





93 RBPs can affect the gene expression of CXXC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CXXC1ENSG00000154832.10809.91500571.641600.502606.443105.59540HepG2ACO1
CXXC1ENSG00000154832.10747.91960497.722900.587402.185601.70690HepG2AKAP1
CXXC1ENSG00000154832.10742.07380574.266900.369702.348101.63530HepG2AKAP8L
CXXC1ENSG00000154832.10569.94170411.795400.468802.717401.93930HepG2ASCC1
CXXC1ENSG00000154832.10770.37860476.164900.694004.188203.03650HepG2BCCIP
CXXC1ENSG00000154832.10658.58470391.243200.751206.547305.39290HepG2CIRBP
CXXC1ENSG00000154832.10851.90190571.444700.576008.786607.73120HepG2CKAP4
CXXC1ENSG00000154832.10584.02520333.963200.806204.761203.75170HepG2CNOT7
CXXC1ENSG00000154832.10237.64000384.27400-0.693403.251601.73910HepG2CSTF2T
CXXC1ENSG00000154832.10696.66540529.528300.395703.535602.82770HepG2CELF1
CXXC1ENSG00000154832.10673.14090528.653100.348503.298702.39640HepG2DDX19B
CXXC1ENSG00000154832.10305.25040404.95980-0.407802.129701.33870HepG2DDX24
CXXC1ENSG00000154832.10879.21770476.719600.883009.235908.15070HepG2DDX3X
CXXC1ENSG00000154832.10786.29460546.887300.523706.012905.08760HepG2DKC1
CXXC1ENSG00000154832.10455.80410309.994000.556105.437804.56940HepG2DNAJC2
CXXC1ENSG00000154832.10574.82890419.280700.455102.482301.60590HepG2EEF2
CXXC1ENSG00000154832.10232.45890381.03870-0.713003.245402.03660HepG2AGO1
CXXC1ENSG00000154832.10529.39410393.669300.427302.234101.69560HepG2EIF2S1
CXXC1ENSG00000154832.10781.41470434.981500.845007.650206.58990HepG2EIF4A3
CXXC1ENSG00000154832.10658.28520423.647900.635702.016501.42350HepG2EIF4B
CXXC1ENSG00000154832.101093.93550928.314900.236701.880901.36470HepG2ETF1
CXXC1ENSG00000154832.10872.80450439.087900.9910011.6501010.32790HepG2FXR1
CXXC1ENSG00000154832.10686.83280407.208100.754106.359205.37260HepG2G3BP1
CXXC1ENSG00000154832.10590.42350432.447800.449102.597001.73630HepG2G3BP2
CXXC1ENSG00000154832.10453.64470302.998300.582202.512001.66310HepG2GEMIN5
CXXC1ENSG00000154832.10431.60660282.656300.610603.196001.73020HepG2HNRNPA0
CXXC1ENSG00000154832.10438.14660315.750900.472502.772402.12490HepG2HNRNPA1
CXXC1ENSG00000154832.10684.45000412.592700.730106.539305.49710HepG2HNRNPK
CXXC1ENSG00000154832.10684.62200518.623800.400504.096903.28940HepG2HNRNPL
CXXC1ENSG00000154832.10580.32740348.892800.734009.429908.36190HepG2HNRNPU
CXXC1ENSG00000154832.10612.66420413.878800.565803.788403.00880HepG2IGF2BP2
CXXC1ENSG00000154832.10845.49940439.242100.9447010.415409.16820HepG2MAGOH
CXXC1ENSG00000154832.10741.99770441.666400.748405.949605.05000HepG2MATR3
CXXC1ENSG00000154832.10796.26710452.042400.816704.331203.54550HepG2NCBP2
CXXC1ENSG00000154832.10874.92920564.564800.631906.620405.44530HepG2NOL12
CXXC1ENSG00000154832.10442.62280305.323200.535602.122301.36060HepG2PABPC1
CXXC1ENSG00000154832.10495.18620345.343700.519804.497503.44720HepG2PARN
CXXC1ENSG00000154832.10674.07600440.532400.613607.426906.51080HepG2PCBP1
CXXC1ENSG00000154832.10474.52780311.184400.608605.559804.54610HepG2PPIL4
CXXC1ENSG00000154832.10629.90620448.265800.490704.589703.92470HepG2PTBP1
CXXC1ENSG00000154832.10674.02650538.933700.322602.008601.48950HepG2PUF60
CXXC1ENSG00000154832.101013.32250572.110300.8246019.2918018.01240HepG2PUM1
CXXC1ENSG00000154832.10762.90290582.243400.389804.035903.31730HepG2PUS1
CXXC1ENSG00000154832.10602.45130431.561700.481202.591401.63290HepG2RBM27
CXXC1ENSG00000154832.10786.41840498.870500.656508.414607.56400HepG2NELFE
CXXC1ENSG00000154832.10647.07720464.641600.477704.352403.60240HepG2RECQL
CXXC1ENSG00000154832.10550.64490718.80110-0.384502.194301.57670HepG2RPLP0
CXXC1ENSG00000154832.10455.96440331.189100.461202.806402.18760HepG2RPS19
CXXC1ENSG00000154832.10551.31160397.983200.470102.436401.68200HepG2RPS2
CXXC1ENSG00000154832.10457.99620310.704200.559705.109804.28200HepG2SAFB2
CXXC1ENSG00000154832.101422.62260743.113200.936809.637508.32110HepG2SF3A3
CXXC1ENSG00000154832.10728.62810466.688800.642606.097505.27770HepG2SF3B4
CXXC1ENSG00000154832.10572.33150362.333300.659408.274107.25600HepG2SMN1
CXXC1ENSG00000154832.10555.11750801.27960-0.529502.686301.91640HepG2SNRNP70
CXXC1ENSG00000154832.10623.20630487.127700.355302.692002.22430HepG2SRSF1
CXXC1ENSG00000154832.10998.90340532.128500.9085019.1905017.74770HepG2SRSF5
CXXC1ENSG00000154832.10934.73880605.168200.6271010.262309.19250HepG2SUCLG1
CXXC1ENSG00000154832.10338.86170437.86500-0.369802.152501.64650HepG2TAF15
CXXC1ENSG00000154832.10560.97080339.013100.726507.055006.32380HepG2TIAL1
CXXC1ENSG00000154832.10498.48190342.045200.543305.042104.32650HepG2TRIM56
CXXC1ENSG00000154832.10726.44370526.529000.464203.812202.77090HepG2TUFM
CXXC1ENSG00000154832.10979.77480638.861200.616805.729704.84260HepG2U2AF1
CXXC1ENSG00000154832.101334.24630631.461001.079203.491002.37860HepG2U2AF2
CXXC1ENSG00000154832.10439.66270275.251600.675504.106203.18130HepG2UCHL5
CXXC1ENSG00000154832.10548.01610659.02530-0.266101.985501.37760HepG2UPF1
CXXC1ENSG00000154832.10849.84020636.266800.417504.286703.56720HepG2UTP3
CXXC1ENSG00000154832.10785.53610458.757700.775805.880404.83470HepG2XRN2
CXXC1ENSG00000154832.10956.52080724.805100.400105.301804.60670HepG2ZNF622
CXXC1ENSG00000154832.102087.483301080.151900.9504032.0210030.17940K562AGGF1
CXXC1ENSG00000154832.101557.667901186.988100.392003.836802.63920K562AKAP8
CXXC1ENSG00000154832.102239.820001123.962900.9947012.2471010.73830K562AKAP8L
CXXC1ENSG00000154832.101798.733301124.703900.677309.213508.24390K562AQR
CXXC1ENSG00000154832.10610.13430472.456300.368802.513701.51240K562CSTF2
CXXC1ENSG00000154832.101558.023901209.365200.365404.848503.63700K562DKC1
CXXC1ENSG00000154832.10840.32900559.173500.587604.840103.61700K562EFTUD2
CXXC1ENSG00000154832.101149.47520939.370900.291102.667401.95800K562EIF2S2
CXXC1ENSG00000154832.10864.80000683.506700.339302.357701.31540K562EIF4B
CXXC1ENSG00000154832.10859.95500662.510800.376203.133801.74370K562EWSR1
CXXC1ENSG00000154832.1099.61960349.20140-1.8096017.2626015.10930K562G3BP2
CXXC1ENSG00000154832.10621.66320773.16860-0.314602.026901.50530K562HNRNPC
CXXC1ENSG00000154832.101446.799801092.304800.405404.018202.71820K562HNRNPL
CXXC1ENSG00000154832.10840.643801075.82410-0.355902.454701.70140K562HSPD1
CXXC1ENSG00000154832.10908.38650555.742000.708805.918004.17450K562IGF2BP2
CXXC1ENSG00000154832.102008.791001192.750000.751905.215204.01090K562KIF1C
CXXC1ENSG00000154832.101705.984801141.800300.579202.807001.72190K562MAK16
CXXC1ENSG00000154832.101959.020801336.189000.551907.946506.24720K562MBNL1
CXXC1ENSG00000154832.101787.91790936.576600.9327010.555508.41560K562NAA15
CXXC1ENSG00000154832.101394.184801168.271600.254903.219402.41940K562NSUN2
CXXC1ENSG00000154832.101849.757901121.432500.721902.466901.54600K562PABPN1
CXXC1ENSG00000154832.10825.07630544.145400.600404.770703.78940K562PRPF8
CXXC1ENSG00000154832.10897.41300693.260300.372302.430101.58820K562PSIP1
CXXC1ENSG00000154832.101488.913701786.99070-0.263302.686501.63610K562PUM1
CXXC1ENSG00000154832.102554.648801114.549501.1966025.4014023.76140K562PUS1
CXXC1ENSG00000154832.102314.607201086.054401.0916030.2481028.20610K562RBM15
CXXC1ENSG00000154832.10698.01940543.670600.360402.338301.57040K562RBM22
CXXC1ENSG00000154832.101443.313901152.833600.324103.590202.66940K562SF3A3
CXXC1ENSG00000154832.10603.56630363.016800.733406.681005.31580K562SF3B4
CXXC1ENSG00000154832.101867.263801177.654400.664903.057901.74320K562SNRNP200
CXXC1ENSG00000154832.10758.69280525.234800.530504.446903.06280K562SRSF5
CXXC1ENSG00000154832.10720.17890526.584200.451602.559001.58550K562SUPV3L1
CXXC1ENSG00000154832.10912.32780562.680100.697104.872303.91980K562TARDBP
CXXC1ENSG00000154832.10824.00690542.788800.602204.010402.99800K562TIA1
CXXC1ENSG00000154832.10826.90910532.820400.634006.215704.41920K562TRA2A
CXXC1ENSG00000154832.10905.85140708.549300.354302.471101.58610K562TRIM56
CXXC1ENSG00000154832.102254.763101130.151600.996402.844801.52770K562UTP18
CXXC1ENSG00000154832.10753.48480567.857900.407902.403001.30130K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CXXC1 is not available on ENCORE database.





13 RBPs can affect the splicing of CXXC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECXXC1ENSG00000154832.10chr18-478137924781387847813109478132284781395647814049-0.132000.000220.00616excludedK562SRSF1
SECXXC1ENSG00000154832.10chr18-478137924781387847813109478132284781395647814049-0.068000.000650.02668excludedK562PRPF8
SECXXC1ENSG00000154832.10chr18-4781379247813878478131094781322847813956478140490.122000.000320.01287includedK562AKAP8L
SECXXC1ENSG00000154832.10chr18-478137924781387847813109478132284781395647814049-0.063000.000860.05173excludedHepG2AKAP1
SECXXC1ENSG00000154832.10chr18-4781379247813878478131094781322847813956478140490.088000.009070.09771includedK562PUS1
SECXXC1ENSG00000154832.10chr18-478137924781387847813109478132284781395647814049-0.084000.000000.00049excludedK562HNRNPL
SECXXC1ENSG00000154832.10chr18-4781379247813878478131094781322847813956478140490.401000.000070.00217includedK562U2AF2
SECXXC1ENSG00000154832.10chr18-4781379247813878478131094781322847813956478140490.110000.001330.03400includedK562RBM15
SECXXC1ENSG00000154832.10chr18-478137924781387847813109478132284781395647814049-0.132000.000150.00889excludedK562PTBP1
A3SSCXXC1ENSG00000154832.10chr18-4781310947813253478131094781322847813792478138780.488000.007890.04309longerK562AQR
A3SSCXXC1ENSG00000154832.10chr18-4781108947811236478110894781120947811371478115950.053000.000030.00027longerK562AQR
A3SSCXXC1ENSG00000154832.10chr18-4780894947809146478089494780910947809223478093760.064000.001560.01035longerK562AQR
A3SSCXXC1ENSG00000154832.10chr18-4780966747809790478096674780973147809884478099620.077000.003460.02092longerK562AQR
A5SSCXXC1ENSG00000154832.10chr18-4781108947811227478111014781122747810747478109320.125000.000000.00004longerK562AQR
RICXXC1ENSG00000154832.10chr18-4781211847812627478121184781229847812391478126270.282000.000190.00169includedK562PUS1
RICXXC1ENSG00000154832.10chr18-4781211847812627478121184781229847812391478126270.341000.000010.00446includedK562SMNDC1
RICXXC1ENSG00000154832.10chr18-478121184781262747812118478122984781239147812627-0.365000.000140.00540excludedK562SRSF1
RICXXC1ENSG00000154832.10chr18-4781211847812627478121184781229847812391478126270.257000.000040.00079includedK562AGGF1
RICXXC1ENSG00000154832.10chr18-478121184781262747812118478122984781239147812627-0.347000.000710.05509excludedK562XRN2
RICXXC1ENSG00000154832.10chr18-4781211847812627478121184781229847812391478126270.239000.000160.00230includedK562AKAP8L
RICXXC1ENSG00000154832.10chr18-4781211847812627478121184781229847812391478126270.311000.000000.00008includedK562RBM15
RICXXC1ENSG00000154832.10chr18-4781211847812627478121184781229847812391478126270.211000.009740.05267includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CXXC1 is not avaliable on ENCORE database.